data_1KD8 # _entry.id 1KD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KD8 pdb_00001kd8 10.2210/pdb1kd8/pdb RCSB RCSB014833 ? ? WWPDB D_1000014833 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-04-03 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 5 'Structure model' pdbx_entry_details 7 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KD8 _pdbx_database_status.recvd_initial_deposition_date 2001-11-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KD9 'X-ray structure of the coiled coil GABH ALLBLL' unspecified PDB 1KDD 'X-ray structure of the coiled coil GABH ALIBLL' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keating, A.E.' 1 'Malashkevich, V.N.' 2 'Tidor, B.' 3 'Kim, P.S.' 4 # _citation.id primary _citation.title 'Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 98 _citation.page_first 14825 _citation.page_last 14830 _citation.year 2001 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11752430 _citation.pdbx_database_id_DOI 10.1073/pnas.261563398 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keating, A.E.' 1 ? primary 'Malashkevich, V.N.' 2 ? primary 'Tidor, B.' 3 ? primary 'Kim, P.S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GCN4 ACID BASE HETERODIMER ACID-d12Ia16V' 4142.462 3 ? ? ? 'coiled coil acid strand' 2 polymer syn 'GCN4 ACID BASE HETERODIMER BASE-d12La16L' 4157.150 3 ? ? ? 'coiled coil base strand' 3 water nat water 18.015 288 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'GABH AIV' 2 'GABH BLL' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)EVKQLEAEVEEIESEVWHLENEVARLEKENAECEA' XEVKQLEAEVEEIESEVWHLENEVARLEKENAECEA A,C,F ? 2 'polypeptide(L)' no yes '(ACE)KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECKA' XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAECKA B,D,E ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLU n 1 3 VAL n 1 4 LYS n 1 5 GLN n 1 6 LEU n 1 7 GLU n 1 8 ALA n 1 9 GLU n 1 10 VAL n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 GLU n 1 15 SER n 1 16 GLU n 1 17 VAL n 1 18 TRP n 1 19 HIS n 1 20 LEU n 1 21 GLU n 1 22 ASN n 1 23 GLU n 1 24 VAL n 1 25 ALA n 1 26 ARG n 1 27 LEU n 1 28 GLU n 1 29 LYS n 1 30 GLU n 1 31 ASN n 1 32 ALA n 1 33 GLU n 1 34 CYS n 1 35 GLU n 1 36 ALA n 2 1 ACE n 2 2 LYS n 2 3 VAL n 2 4 LYS n 2 5 GLN n 2 6 LEU n 2 7 LYS n 2 8 ALA n 2 9 LYS n 2 10 VAL n 2 11 GLU n 2 12 GLU n 2 13 LEU n 2 14 LYS n 2 15 SER n 2 16 LYS n 2 17 LEU n 2 18 TRP n 2 19 HIS n 2 20 LEU n 2 21 LYS n 2 22 ASN n 2 23 LYS n 2 24 VAL n 2 25 ALA n 2 26 ARG n 2 27 LEU n 2 28 LYS n 2 29 LYS n 2 30 LYS n 2 31 ASN n 2 32 ALA n 2 33 GLU n 2 34 CYS n 2 35 LYS n 2 36 ALA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'The peptide was chemically synthesized.' 2 1 sample ? ? ? ? ? 'The peptide was chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLU 2 1 1 GLU GLU A . n A 1 3 VAL 3 2 2 VAL VAL A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 TRP 18 17 17 TRP TRP A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 CYS 34 33 33 CYS CYS A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ALA 36 35 35 ALA ALA A . n B 2 1 ACE 1 0 0 ACE ACE B . n B 2 2 LYS 2 1 1 LYS LYS B . n B 2 3 VAL 3 2 2 VAL VAL B . n B 2 4 LYS 4 3 3 LYS LYS B . n B 2 5 GLN 5 4 4 GLN GLN B . n B 2 6 LEU 6 5 5 LEU LEU B . n B 2 7 LYS 7 6 6 LYS LYS B . n B 2 8 ALA 8 7 7 ALA ALA B . n B 2 9 LYS 9 8 8 LYS LYS B . n B 2 10 VAL 10 9 9 VAL VAL B . n B 2 11 GLU 11 10 10 GLU GLU B . n B 2 12 GLU 12 11 11 GLU GLU B . n B 2 13 LEU 13 12 12 LEU LEU B . n B 2 14 LYS 14 13 13 LYS LYS B . n B 2 15 SER 15 14 14 SER SER B . n B 2 16 LYS 16 15 15 LYS LYS B . n B 2 17 LEU 17 16 16 LEU LEU B . n B 2 18 TRP 18 17 17 TRP TRP B . n B 2 19 HIS 19 18 18 HIS HIS B . n B 2 20 LEU 20 19 19 LEU LEU B . n B 2 21 LYS 21 20 20 LYS LYS B . n B 2 22 ASN 22 21 21 ASN ASN B . n B 2 23 LYS 23 22 22 LYS LYS B . n B 2 24 VAL 24 23 23 VAL VAL B . n B 2 25 ALA 25 24 24 ALA ALA B . n B 2 26 ARG 26 25 25 ARG ARG B . n B 2 27 LEU 27 26 26 LEU LEU B . n B 2 28 LYS 28 27 27 LYS LYS B . n B 2 29 LYS 29 28 28 LYS LYS B . n B 2 30 LYS 30 29 29 LYS LYS B . n B 2 31 ASN 31 30 30 ASN ASN B . n B 2 32 ALA 32 31 31 ALA ALA B . n B 2 33 GLU 33 32 32 GLU GLU B . n B 2 34 CYS 34 33 33 CYS CYS B . n B 2 35 LYS 35 34 34 LYS LYS B . n B 2 36 ALA 36 35 35 ALA ALA B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLU 2 1 1 GLU GLU C . n C 1 3 VAL 3 2 2 VAL VAL C . n C 1 4 LYS 4 3 3 LYS LYS C . n C 1 5 GLN 5 4 4 GLN GLN C . n C 1 6 LEU 6 5 5 LEU LEU C . n C 1 7 GLU 7 6 6 GLU GLU C . n C 1 8 ALA 8 7 7 ALA ALA C . n C 1 9 GLU 9 8 8 GLU GLU C . n C 1 10 VAL 10 9 9 VAL VAL C . n C 1 11 GLU 11 10 10 GLU GLU C . n C 1 12 GLU 12 11 11 GLU GLU C . n C 1 13 ILE 13 12 12 ILE ILE C . n C 1 14 GLU 14 13 13 GLU GLU C . n C 1 15 SER 15 14 14 SER SER C . n C 1 16 GLU 16 15 15 GLU GLU C . n C 1 17 VAL 17 16 16 VAL VAL C . n C 1 18 TRP 18 17 17 TRP TRP C . n C 1 19 HIS 19 18 18 HIS HIS C . n C 1 20 LEU 20 19 19 LEU LEU C . n C 1 21 GLU 21 20 20 GLU GLU C . n C 1 22 ASN 22 21 21 ASN ASN C . n C 1 23 GLU 23 22 22 GLU GLU C . n C 1 24 VAL 24 23 23 VAL VAL C . n C 1 25 ALA 25 24 24 ALA ALA C . n C 1 26 ARG 26 25 25 ARG ARG C . n C 1 27 LEU 27 26 26 LEU LEU C . n C 1 28 GLU 28 27 27 GLU GLU C . n C 1 29 LYS 29 28 28 LYS LYS C . n C 1 30 GLU 30 29 29 GLU GLU C . n C 1 31 ASN 31 30 30 ASN ASN C . n C 1 32 ALA 32 31 31 ALA ALA C . n C 1 33 GLU 33 32 32 GLU GLU C . n C 1 34 CYS 34 33 33 CYS CYS C . n C 1 35 GLU 35 34 34 GLU GLU C . n C 1 36 ALA 36 35 35 ALA ALA C . n D 2 1 ACE 1 0 0 ACE ACE D . n D 2 2 LYS 2 1 1 LYS LYS D . n D 2 3 VAL 3 2 2 VAL VAL D . n D 2 4 LYS 4 3 3 LYS LYS D . n D 2 5 GLN 5 4 4 GLN GLN D . n D 2 6 LEU 6 5 5 LEU LEU D . n D 2 7 LYS 7 6 6 LYS LYS D . n D 2 8 ALA 8 7 7 ALA ALA D . n D 2 9 LYS 9 8 8 LYS LYS D . n D 2 10 VAL 10 9 9 VAL VAL D . n D 2 11 GLU 11 10 10 GLU GLU D . n D 2 12 GLU 12 11 11 GLU GLU D . n D 2 13 LEU 13 12 12 LEU LEU D . n D 2 14 LYS 14 13 13 LYS LYS D . n D 2 15 SER 15 14 14 SER SER D . n D 2 16 LYS 16 15 15 LYS LYS D . n D 2 17 LEU 17 16 16 LEU LEU D . n D 2 18 TRP 18 17 17 TRP TRP D . n D 2 19 HIS 19 18 18 HIS HIS D . n D 2 20 LEU 20 19 19 LEU LEU D . n D 2 21 LYS 21 20 20 LYS LYS D . n D 2 22 ASN 22 21 21 ASN ASN D . n D 2 23 LYS 23 22 22 LYS LYS D . n D 2 24 VAL 24 23 23 VAL VAL D . n D 2 25 ALA 25 24 24 ALA ALA D . n D 2 26 ARG 26 25 25 ARG ARG D . n D 2 27 LEU 27 26 26 LEU LEU D . n D 2 28 LYS 28 27 27 LYS LYS D . n D 2 29 LYS 29 28 28 LYS LYS D . n D 2 30 LYS 30 29 29 LYS LYS D . n D 2 31 ASN 31 30 30 ASN ASN D . n D 2 32 ALA 32 31 31 ALA ALA D . n D 2 33 GLU 33 32 32 GLU GLU D . n D 2 34 CYS 34 33 33 CYS CYS D . n D 2 35 LYS 35 34 34 LYS LYS D . n D 2 36 ALA 36 35 35 ALA ALA D . n E 2 1 ACE 1 0 0 ACE ACE E . n E 2 2 LYS 2 1 1 LYS LYS E . n E 2 3 VAL 3 2 2 VAL VAL E . n E 2 4 LYS 4 3 3 LYS LYS E . n E 2 5 GLN 5 4 4 GLN GLN E . n E 2 6 LEU 6 5 5 LEU LEU E . n E 2 7 LYS 7 6 6 LYS LYS E . n E 2 8 ALA 8 7 7 ALA ALA E . n E 2 9 LYS 9 8 8 LYS LYS E . n E 2 10 VAL 10 9 9 VAL VAL E . n E 2 11 GLU 11 10 10 GLU GLU E . n E 2 12 GLU 12 11 11 GLU GLU E . n E 2 13 LEU 13 12 12 LEU LEU E . n E 2 14 LYS 14 13 13 LYS LYS E . n E 2 15 SER 15 14 14 SER SER E . n E 2 16 LYS 16 15 15 LYS LYS E . n E 2 17 LEU 17 16 16 LEU LEU E . n E 2 18 TRP 18 17 17 TRP TRP E . n E 2 19 HIS 19 18 18 HIS HIS E . n E 2 20 LEU 20 19 19 LEU LEU E . n E 2 21 LYS 21 20 20 LYS LYS E . n E 2 22 ASN 22 21 21 ASN ASN E . n E 2 23 LYS 23 22 22 LYS LYS E . n E 2 24 VAL 24 23 23 VAL VAL E . n E 2 25 ALA 25 24 24 ALA ALA E . n E 2 26 ARG 26 25 25 ARG ARG E . n E 2 27 LEU 27 26 26 LEU LEU E . n E 2 28 LYS 28 27 27 LYS LYS E . n E 2 29 LYS 29 28 28 LYS LYS E . n E 2 30 LYS 30 29 29 LYS LYS E . n E 2 31 ASN 31 30 30 ASN ASN E . n E 2 32 ALA 32 31 31 ALA ALA E . n E 2 33 GLU 33 32 32 GLU GLU E . n E 2 34 CYS 34 33 33 CYS CYS E . n E 2 35 LYS 35 34 34 LYS LYS E . n E 2 36 ALA 36 35 ? ? ? E . n F 1 1 ACE 1 0 0 ACE ACE F . n F 1 2 GLU 2 1 1 GLU GLU F . n F 1 3 VAL 3 2 2 VAL VAL F . n F 1 4 LYS 4 3 3 LYS LYS F . n F 1 5 GLN 5 4 4 GLN GLN F . n F 1 6 LEU 6 5 5 LEU LEU F . n F 1 7 GLU 7 6 6 GLU GLU F . n F 1 8 ALA 8 7 7 ALA ALA F . n F 1 9 GLU 9 8 8 GLU GLU F . n F 1 10 VAL 10 9 9 VAL VAL F . n F 1 11 GLU 11 10 10 GLU GLU F . n F 1 12 GLU 12 11 11 GLU GLU F . n F 1 13 ILE 13 12 12 ILE ILE F . n F 1 14 GLU 14 13 13 GLU GLU F . n F 1 15 SER 15 14 14 SER SER F . n F 1 16 GLU 16 15 15 GLU GLU F . n F 1 17 VAL 17 16 16 VAL VAL F . n F 1 18 TRP 18 17 17 TRP TRP F . n F 1 19 HIS 19 18 18 HIS HIS F . n F 1 20 LEU 20 19 19 LEU LEU F . n F 1 21 GLU 21 20 20 GLU GLU F . n F 1 22 ASN 22 21 21 ASN ASN F . n F 1 23 GLU 23 22 22 GLU GLU F . n F 1 24 VAL 24 23 23 VAL VAL F . n F 1 25 ALA 25 24 24 ALA ALA F . n F 1 26 ARG 26 25 25 ARG ARG F . n F 1 27 LEU 27 26 26 LEU LEU F . n F 1 28 GLU 28 27 27 GLU GLU F . n F 1 29 LYS 29 28 28 LYS LYS F . n F 1 30 GLU 30 29 29 GLU GLU F . n F 1 31 ASN 31 30 30 ASN ASN F . n F 1 32 ALA 32 31 31 ALA ALA F . n F 1 33 GLU 33 32 32 GLU GLU F . n F 1 34 CYS 34 33 33 CYS CYS F . n F 1 35 GLU 35 34 34 GLU GLU F . n F 1 36 ALA 36 35 35 ALA ALA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 36 11 HOH HOH A . G 3 HOH 2 37 16 HOH HOH A . G 3 HOH 3 38 37 HOH HOH A . G 3 HOH 4 39 40 HOH HOH A . G 3 HOH 5 40 41 HOH HOH A . G 3 HOH 6 41 44 HOH HOH A . G 3 HOH 7 42 45 HOH HOH A . G 3 HOH 8 43 46 HOH HOH A . G 3 HOH 9 44 60 HOH HOH A . G 3 HOH 10 45 64 HOH HOH A . G 3 HOH 11 46 67 HOH HOH A . G 3 HOH 12 47 69 HOH HOH A . G 3 HOH 13 48 81 HOH HOH A . G 3 HOH 14 49 85 HOH HOH A . G 3 HOH 15 50 86 HOH HOH A . G 3 HOH 16 51 89 HOH HOH A . G 3 HOH 17 52 92 HOH HOH A . G 3 HOH 18 53 93 HOH HOH A . G 3 HOH 19 54 94 HOH HOH A . G 3 HOH 20 55 97 HOH HOH A . G 3 HOH 21 56 105 HOH HOH A . G 3 HOH 22 57 109 HOH HOH A . G 3 HOH 23 58 110 HOH HOH A . G 3 HOH 24 59 114 HOH HOH A . G 3 HOH 25 60 134 HOH HOH A . G 3 HOH 26 61 139 HOH HOH A . G 3 HOH 27 62 152 HOH HOH A . G 3 HOH 28 63 161 HOH HOH A . G 3 HOH 29 64 176 HOH HOH A . G 3 HOH 30 65 177 HOH HOH A . G 3 HOH 31 66 181 HOH HOH A . G 3 HOH 32 67 183 HOH HOH A . G 3 HOH 33 68 184 HOH HOH A . G 3 HOH 34 69 193 HOH HOH A . G 3 HOH 35 70 195 HOH HOH A . G 3 HOH 36 71 224 HOH HOH A . G 3 HOH 37 72 225 HOH HOH A . G 3 HOH 38 73 233 HOH HOH A . G 3 HOH 39 74 235 HOH HOH A . G 3 HOH 40 75 263 HOH HOH A . G 3 HOH 41 76 269 HOH HOH A . G 3 HOH 42 77 270 HOH HOH A . G 3 HOH 43 78 275 HOH HOH A . G 3 HOH 44 79 281 HOH HOH A . H 3 HOH 1 36 2 HOH HOH B . H 3 HOH 2 37 3 HOH HOH B . H 3 HOH 3 38 14 HOH HOH B . H 3 HOH 4 39 23 HOH HOH B . H 3 HOH 5 40 29 HOH HOH B . H 3 HOH 6 41 33 HOH HOH B . H 3 HOH 7 42 59 HOH HOH B . H 3 HOH 8 43 62 HOH HOH B . H 3 HOH 9 44 63 HOH HOH B . H 3 HOH 10 45 84 HOH HOH B . H 3 HOH 11 46 88 HOH HOH B . H 3 HOH 12 47 91 HOH HOH B . H 3 HOH 13 48 107 HOH HOH B . H 3 HOH 14 49 111 HOH HOH B . H 3 HOH 15 50 142 HOH HOH B . H 3 HOH 16 51 146 HOH HOH B . H 3 HOH 17 52 149 HOH HOH B . H 3 HOH 18 53 150 HOH HOH B . H 3 HOH 19 54 153 HOH HOH B . H 3 HOH 20 55 163 HOH HOH B . H 3 HOH 21 56 164 HOH HOH B . H 3 HOH 22 57 165 HOH HOH B . H 3 HOH 23 58 167 HOH HOH B . H 3 HOH 24 59 169 HOH HOH B . H 3 HOH 25 60 172 HOH HOH B . H 3 HOH 26 61 192 HOH HOH B . H 3 HOH 27 62 194 HOH HOH B . H 3 HOH 28 63 196 HOH HOH B . H 3 HOH 29 64 201 HOH HOH B . H 3 HOH 30 65 236 HOH HOH B . H 3 HOH 31 66 250 HOH HOH B . H 3 HOH 32 67 257 HOH HOH B . H 3 HOH 33 68 266 HOH HOH B . H 3 HOH 34 69 272 HOH HOH B . H 3 HOH 35 70 274 HOH HOH B . H 3 HOH 36 71 284 HOH HOH B . H 3 HOH 37 72 287 HOH HOH B . I 3 HOH 1 36 7 HOH HOH C . I 3 HOH 2 37 8 HOH HOH C . I 3 HOH 3 38 10 HOH HOH C . I 3 HOH 4 39 17 HOH HOH C . I 3 HOH 5 40 19 HOH HOH C . I 3 HOH 6 41 21 HOH HOH C . I 3 HOH 7 42 27 HOH HOH C . I 3 HOH 8 43 28 HOH HOH C . I 3 HOH 9 44 36 HOH HOH C . I 3 HOH 10 45 43 HOH HOH C . I 3 HOH 11 46 55 HOH HOH C . I 3 HOH 12 47 66 HOH HOH C . I 3 HOH 13 48 73 HOH HOH C . I 3 HOH 14 49 78 HOH HOH C . I 3 HOH 15 50 83 HOH HOH C . I 3 HOH 16 51 95 HOH HOH C . I 3 HOH 17 52 102 HOH HOH C . I 3 HOH 18 53 106 HOH HOH C . I 3 HOH 19 54 113 HOH HOH C . I 3 HOH 20 55 115 HOH HOH C . I 3 HOH 21 56 116 HOH HOH C . I 3 HOH 22 57 122 HOH HOH C . I 3 HOH 23 58 127 HOH HOH C . I 3 HOH 24 59 128 HOH HOH C . I 3 HOH 25 60 129 HOH HOH C . I 3 HOH 26 61 131 HOH HOH C . I 3 HOH 27 62 137 HOH HOH C . I 3 HOH 28 63 144 HOH HOH C . I 3 HOH 29 64 145 HOH HOH C . I 3 HOH 30 65 157 HOH HOH C . I 3 HOH 31 66 166 HOH HOH C . I 3 HOH 32 67 171 HOH HOH C . I 3 HOH 33 68 186 HOH HOH C . I 3 HOH 34 69 187 HOH HOH C . I 3 HOH 35 70 191 HOH HOH C . I 3 HOH 36 71 207 HOH HOH C . I 3 HOH 37 72 212 HOH HOH C . I 3 HOH 38 73 230 HOH HOH C . I 3 HOH 39 74 234 HOH HOH C . I 3 HOH 40 75 244 HOH HOH C . I 3 HOH 41 76 245 HOH HOH C . I 3 HOH 42 77 247 HOH HOH C . I 3 HOH 43 78 248 HOH HOH C . I 3 HOH 44 79 254 HOH HOH C . I 3 HOH 45 80 255 HOH HOH C . I 3 HOH 46 81 267 HOH HOH C . I 3 HOH 47 82 268 HOH HOH C . I 3 HOH 48 83 282 HOH HOH C . I 3 HOH 49 84 283 HOH HOH C . J 3 HOH 1 36 9 HOH HOH D . J 3 HOH 2 37 22 HOH HOH D . J 3 HOH 3 38 31 HOH HOH D . J 3 HOH 4 39 32 HOH HOH D . J 3 HOH 5 40 47 HOH HOH D . J 3 HOH 6 41 48 HOH HOH D . J 3 HOH 7 42 49 HOH HOH D . J 3 HOH 8 43 96 HOH HOH D . J 3 HOH 9 44 120 HOH HOH D . J 3 HOH 10 45 138 HOH HOH D . J 3 HOH 11 46 141 HOH HOH D . J 3 HOH 12 47 147 HOH HOH D . J 3 HOH 13 48 158 HOH HOH D . J 3 HOH 14 49 162 HOH HOH D . J 3 HOH 15 50 182 HOH HOH D . J 3 HOH 16 51 185 HOH HOH D . J 3 HOH 17 52 190 HOH HOH D . J 3 HOH 18 53 216 HOH HOH D . J 3 HOH 19 54 220 HOH HOH D . J 3 HOH 20 55 227 HOH HOH D . J 3 HOH 21 56 228 HOH HOH D . J 3 HOH 22 57 241 HOH HOH D . J 3 HOH 23 58 242 HOH HOH D . J 3 HOH 24 59 243 HOH HOH D . J 3 HOH 25 60 261 HOH HOH D . J 3 HOH 26 61 277 HOH HOH D . J 3 HOH 27 62 286 HOH HOH D . J 3 HOH 28 63 288 HOH HOH D . K 3 HOH 1 36 1 HOH HOH E . K 3 HOH 2 37 6 HOH HOH E . K 3 HOH 3 38 13 HOH HOH E . K 3 HOH 4 39 15 HOH HOH E . K 3 HOH 5 40 24 HOH HOH E . K 3 HOH 6 41 26 HOH HOH E . K 3 HOH 7 42 34 HOH HOH E . K 3 HOH 8 43 53 HOH HOH E . K 3 HOH 9 44 57 HOH HOH E . K 3 HOH 10 45 58 HOH HOH E . K 3 HOH 11 46 68 HOH HOH E . K 3 HOH 12 47 70 HOH HOH E . K 3 HOH 13 48 72 HOH HOH E . K 3 HOH 14 49 74 HOH HOH E . K 3 HOH 15 50 75 HOH HOH E . K 3 HOH 16 51 77 HOH HOH E . K 3 HOH 17 52 82 HOH HOH E . K 3 HOH 18 53 87 HOH HOH E . K 3 HOH 19 54 99 HOH HOH E . K 3 HOH 20 55 101 HOH HOH E . K 3 HOH 21 56 104 HOH HOH E . K 3 HOH 22 57 119 HOH HOH E . K 3 HOH 23 58 121 HOH HOH E . K 3 HOH 24 59 123 HOH HOH E . K 3 HOH 25 60 132 HOH HOH E . K 3 HOH 26 61 133 HOH HOH E . K 3 HOH 27 62 135 HOH HOH E . K 3 HOH 28 63 155 HOH HOH E . K 3 HOH 29 64 160 HOH HOH E . K 3 HOH 30 65 168 HOH HOH E . K 3 HOH 31 66 173 HOH HOH E . K 3 HOH 32 67 179 HOH HOH E . K 3 HOH 33 68 200 HOH HOH E . K 3 HOH 34 69 203 HOH HOH E . K 3 HOH 35 70 205 HOH HOH E . K 3 HOH 36 71 206 HOH HOH E . K 3 HOH 37 72 208 HOH HOH E . K 3 HOH 38 73 209 HOH HOH E . K 3 HOH 39 74 215 HOH HOH E . K 3 HOH 40 75 218 HOH HOH E . K 3 HOH 41 76 219 HOH HOH E . K 3 HOH 42 77 223 HOH HOH E . K 3 HOH 43 78 226 HOH HOH E . K 3 HOH 44 79 237 HOH HOH E . K 3 HOH 45 80 239 HOH HOH E . K 3 HOH 46 81 251 HOH HOH E . K 3 HOH 47 82 256 HOH HOH E . K 3 HOH 48 83 258 HOH HOH E . K 3 HOH 49 84 260 HOH HOH E . K 3 HOH 50 85 262 HOH HOH E . K 3 HOH 51 86 271 HOH HOH E . K 3 HOH 52 87 276 HOH HOH E . K 3 HOH 53 88 279 HOH HOH E . L 3 HOH 1 36 4 HOH HOH F . L 3 HOH 2 37 5 HOH HOH F . L 3 HOH 3 38 12 HOH HOH F . L 3 HOH 4 39 18 HOH HOH F . L 3 HOH 5 40 20 HOH HOH F . L 3 HOH 6 41 25 HOH HOH F . L 3 HOH 7 42 30 HOH HOH F . L 3 HOH 8 43 35 HOH HOH F . L 3 HOH 9 44 38 HOH HOH F . L 3 HOH 10 45 39 HOH HOH F . L 3 HOH 11 46 42 HOH HOH F . L 3 HOH 12 47 50 HOH HOH F . L 3 HOH 13 48 51 HOH HOH F . L 3 HOH 14 49 52 HOH HOH F . L 3 HOH 15 50 54 HOH HOH F . L 3 HOH 16 51 56 HOH HOH F . L 3 HOH 17 52 61 HOH HOH F . L 3 HOH 18 53 65 HOH HOH F . L 3 HOH 19 54 71 HOH HOH F . L 3 HOH 20 55 76 HOH HOH F . L 3 HOH 21 56 79 HOH HOH F . L 3 HOH 22 57 80 HOH HOH F . L 3 HOH 23 58 90 HOH HOH F . L 3 HOH 24 59 98 HOH HOH F . L 3 HOH 25 60 100 HOH HOH F . L 3 HOH 26 61 103 HOH HOH F . L 3 HOH 27 62 108 HOH HOH F . L 3 HOH 28 63 112 HOH HOH F . L 3 HOH 29 64 117 HOH HOH F . L 3 HOH 30 65 118 HOH HOH F . L 3 HOH 31 66 124 HOH HOH F . L 3 HOH 32 67 125 HOH HOH F . L 3 HOH 33 68 126 HOH HOH F . L 3 HOH 34 69 130 HOH HOH F . L 3 HOH 35 70 136 HOH HOH F . L 3 HOH 36 71 140 HOH HOH F . L 3 HOH 37 72 143 HOH HOH F . L 3 HOH 38 73 148 HOH HOH F . L 3 HOH 39 74 151 HOH HOH F . L 3 HOH 40 75 154 HOH HOH F . L 3 HOH 41 76 156 HOH HOH F . L 3 HOH 42 77 159 HOH HOH F . L 3 HOH 43 78 170 HOH HOH F . L 3 HOH 44 79 174 HOH HOH F . L 3 HOH 45 80 175 HOH HOH F . L 3 HOH 46 81 178 HOH HOH F . L 3 HOH 47 82 180 HOH HOH F . L 3 HOH 48 83 188 HOH HOH F . L 3 HOH 49 84 189 HOH HOH F . L 3 HOH 50 85 197 HOH HOH F . L 3 HOH 51 86 198 HOH HOH F . L 3 HOH 52 87 199 HOH HOH F . L 3 HOH 53 88 202 HOH HOH F . L 3 HOH 54 89 204 HOH HOH F . L 3 HOH 55 90 210 HOH HOH F . L 3 HOH 56 91 211 HOH HOH F . L 3 HOH 57 92 213 HOH HOH F . L 3 HOH 58 93 214 HOH HOH F . L 3 HOH 59 94 217 HOH HOH F . L 3 HOH 60 95 221 HOH HOH F . L 3 HOH 61 96 222 HOH HOH F . L 3 HOH 62 97 229 HOH HOH F . L 3 HOH 63 98 231 HOH HOH F . L 3 HOH 64 99 232 HOH HOH F . L 3 HOH 65 100 238 HOH HOH F . L 3 HOH 66 101 240 HOH HOH F . L 3 HOH 67 102 246 HOH HOH F . L 3 HOH 68 103 249 HOH HOH F . L 3 HOH 69 104 252 HOH HOH F . L 3 HOH 70 105 253 HOH HOH F . L 3 HOH 71 106 259 HOH HOH F . L 3 HOH 72 107 264 HOH HOH F . L 3 HOH 73 108 265 HOH HOH F . L 3 HOH 74 109 273 HOH HOH F . L 3 HOH 75 110 278 HOH HOH F . L 3 HOH 76 111 280 HOH HOH F . L 3 HOH 77 112 285 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 3 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 3 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 3 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 3 ? NZ ? A LYS 4 NZ 5 1 Y 1 A GLN 4 ? CG ? A GLN 5 CG 6 1 Y 1 A GLN 4 ? CD ? A GLN 5 CD 7 1 Y 1 A GLN 4 ? OE1 ? A GLN 5 OE1 8 1 Y 1 A GLN 4 ? NE2 ? A GLN 5 NE2 9 1 Y 1 B VAL 2 ? CG1 ? B VAL 3 CG1 10 1 Y 1 B VAL 2 ? CG2 ? B VAL 3 CG2 11 1 Y 1 B LYS 3 ? CG ? B LYS 4 CG 12 1 Y 1 B LYS 3 ? CD ? B LYS 4 CD 13 1 Y 1 B LYS 3 ? CE ? B LYS 4 CE 14 1 Y 1 B LYS 3 ? NZ ? B LYS 4 NZ 15 1 Y 1 B LYS 6 ? CD ? B LYS 7 CD 16 1 Y 1 B LYS 6 ? CE ? B LYS 7 CE 17 1 Y 1 B LYS 6 ? NZ ? B LYS 7 NZ 18 1 Y 1 C GLN 4 ? CD ? C GLN 5 CD 19 1 Y 1 C GLN 4 ? OE1 ? C GLN 5 OE1 20 1 Y 1 C GLN 4 ? NE2 ? C GLN 5 NE2 21 1 Y 1 D LYS 3 ? CG ? D LYS 4 CG 22 1 Y 1 D LYS 3 ? CD ? D LYS 4 CD 23 1 Y 1 D LYS 3 ? CE ? D LYS 4 CE 24 1 Y 1 D LYS 3 ? NZ ? D LYS 4 NZ 25 1 Y 1 D LYS 34 ? CG ? D LYS 35 CG 26 1 Y 1 D LYS 34 ? CD ? D LYS 35 CD 27 1 Y 1 D LYS 34 ? CE ? D LYS 35 CE 28 1 Y 1 D LYS 34 ? NZ ? D LYS 35 NZ 29 1 Y 1 E GLN 4 ? CG ? E GLN 5 CG 30 1 Y 1 E GLN 4 ? CD ? E GLN 5 CD 31 1 Y 1 E GLN 4 ? OE1 ? E GLN 5 OE1 32 1 Y 1 E GLN 4 ? NE2 ? E GLN 5 NE2 33 1 Y 1 F LYS 3 ? CD ? F LYS 4 CD 34 1 Y 1 F LYS 3 ? CE ? F LYS 4 CE 35 1 Y 1 F LYS 3 ? NZ ? F LYS 4 NZ 36 1 Y 1 F GLN 4 ? CG ? F GLN 5 CG 37 1 Y 1 F GLN 4 ? CD ? F GLN 5 CD 38 1 Y 1 F GLN 4 ? OE1 ? F GLN 5 OE1 39 1 Y 1 F GLN 4 ? NE2 ? F GLN 5 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1KD8 _cell.length_a 86.044 _cell.length_b 86.044 _cell.length_c 78.384 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KD8 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1KD8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.910 _exptl_crystal.density_percent_sol 56.1 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.7 _exptl_crystal_grow.pdbx_details 'PEG 4000, Na Hepes, 2-propanol, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-10-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9763 # _reflns.entry_id 1KD8 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 35.0 _reflns.d_resolution_high 1.85 _reflns.number_obs 25471 _reflns.number_all 25471 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 20.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.413 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KD8 _refine.ls_number_reflns_obs 23529 _refine.ls_number_reflns_all 23529 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 28.97 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.277 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 2395 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 35.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'flat model' _refine.solvent_model_param_ksol 0.386808 _refine.solvent_model_param_bsol 62.63 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'calculated structure' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model restrained _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KD8 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1704 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 288 _refine_hist.number_atoms_total 1992 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 28.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 13.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 3469 _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.percent_reflns_obs 99.3 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error 0.017 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 381 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1KD8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KD8 _struct.title 'X-RAY STRUCTURE OF THE COILED COIL GCN4 ACID BASE HETERODIMER ACID-d12Ia16V BASE-d12La16L' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KD8 _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'coiled coil heterodimer, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 1 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1KD8 1KD8 ? ? ? 2 2 PDB 1KD8 1KD8 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KD8 A 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 2 2 1KD8 B 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 3 1 1KD8 C 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 4 2 1KD8 D 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 5 2 1KD8 E 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 6 1 1KD8 F 1 ? 36 ? 1KD8 0 ? 35 ? 0 35 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2150 ? 1 MORE -22 ? 1 'SSA (A^2)' 5150 ? 2 'ABSA (A^2)' 2180 ? 2 MORE -23 ? 2 'SSA (A^2)' 5300 ? 3 'ABSA (A^2)' 2190 ? 3 MORE -23 ? 3 'SSA (A^2)' 5280 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;The assembly is a dimer. There are three copies of the dimer intact in the asymmetric unit. ; ? 2 ? ? 3 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 3 ? ALA A 36 ? VAL A 2 ALA A 35 1 ? 34 HELX_P HELX_P2 2 LYS B 2 ? ALA B 36 ? LYS B 1 ALA B 35 1 ? 35 HELX_P HELX_P3 3 GLU C 2 ? ALA C 36 ? GLU C 1 ALA C 35 1 ? 35 HELX_P HELX_P4 4 LYS D 2 ? SER D 15 ? LYS D 1 SER D 14 1 ? 14 HELX_P HELX_P5 5 LYS D 16 ? ALA D 36 ? LYS D 15 ALA D 35 1 ? 21 HELX_P HELX_P6 6 LYS E 2 ? LYS E 35 ? LYS E 1 LYS E 34 1 ? 34 HELX_P HELX_P7 7 GLU F 2 ? ALA F 36 ? GLU F 1 ALA F 35 1 ? 35 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 34 SG ? ? ? 1_555 B CYS 34 SG ? ? A CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? C CYS 34 SG ? ? ? 1_555 D CYS 34 SG ? ? C CYS 33 D CYS 33 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? E CYS 34 SG ? ? ? 1_555 F CYS 34 SG ? ? E CYS 33 F CYS 33 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLU 2 N ? ? A ACE 0 A GLU 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B LYS 2 N ? ? B ACE 0 B LYS 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? C ACE 1 C ? ? ? 1_555 C GLU 2 N ? ? C ACE 0 C GLU 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? D ACE 1 C ? ? ? 1_555 D LYS 2 N ? ? D ACE 0 D LYS 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? E ACE 1 C ? ? ? 1_555 E LYS 2 N ? ? E ACE 0 E LYS 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? F ACE 1 C ? ? ? 1_555 F GLU 2 N ? ? F ACE 0 F GLU 1 1_555 ? ? ? ? ? ? ? 1.332 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? GLU A 2 ? ACE A 0 ? 1_555 GLU A 1 ? 1_555 . . GLU 10 ACE None 'Terminal acetylation' 2 ACE B 1 ? LYS B 2 ? ACE B 0 ? 1_555 LYS B 1 ? 1_555 . . LYS 20 ACE None 'Terminal acetylation' 3 ACE C 1 ? GLU C 2 ? ACE C 0 ? 1_555 GLU C 1 ? 1_555 . . GLU 10 ACE None 'Terminal acetylation' 4 ACE D 1 ? LYS D 2 ? ACE D 0 ? 1_555 LYS D 1 ? 1_555 . . LYS 20 ACE None 'Terminal acetylation' 5 ACE E 1 ? LYS E 2 ? ACE E 0 ? 1_555 LYS E 1 ? 1_555 . . LYS 20 ACE None 'Terminal acetylation' 6 ACE F 1 ? GLU F 2 ? ACE F 0 ? 1_555 GLU F 1 ? 1_555 . . GLU 10 ACE None 'Terminal acetylation' 7 CYS A 34 ? CYS B 34 ? CYS A 33 ? 1_555 CYS B 33 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS C 34 ? CYS D 34 ? CYS C 33 ? 1_555 CYS D 33 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS E 34 ? CYS F 34 ? CYS E 33 ? 1_555 CYS F 33 ? 1_555 SG SG . . . None 'Disulfide bridge' # _pdbx_entry_details.entry_id 1KD8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 42 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id E _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 35 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id E _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 CYS N N N N 65 CYS CA C N R 66 CYS C C N N 67 CYS O O N N 68 CYS CB C N N 69 CYS SG S N N 70 CYS OXT O N N 71 CYS H H N N 72 CYS H2 H N N 73 CYS HA H N N 74 CYS HB2 H N N 75 CYS HB3 H N N 76 CYS HG H N N 77 CYS HXT H N N 78 GLN N N N N 79 GLN CA C N S 80 GLN C C N N 81 GLN O O N N 82 GLN CB C N N 83 GLN CG C N N 84 GLN CD C N N 85 GLN OE1 O N N 86 GLN NE2 N N N 87 GLN OXT O N N 88 GLN H H N N 89 GLN H2 H N N 90 GLN HA H N N 91 GLN HB2 H N N 92 GLN HB3 H N N 93 GLN HG2 H N N 94 GLN HG3 H N N 95 GLN HE21 H N N 96 GLN HE22 H N N 97 GLN HXT H N N 98 GLU N N N N 99 GLU CA C N S 100 GLU C C N N 101 GLU O O N N 102 GLU CB C N N 103 GLU CG C N N 104 GLU CD C N N 105 GLU OE1 O N N 106 GLU OE2 O N N 107 GLU OXT O N N 108 GLU H H N N 109 GLU H2 H N N 110 GLU HA H N N 111 GLU HB2 H N N 112 GLU HB3 H N N 113 GLU HG2 H N N 114 GLU HG3 H N N 115 GLU HE2 H N N 116 GLU HXT H N N 117 HIS N N N N 118 HIS CA C N S 119 HIS C C N N 120 HIS O O N N 121 HIS CB C N N 122 HIS CG C Y N 123 HIS ND1 N Y N 124 HIS CD2 C Y N 125 HIS CE1 C Y N 126 HIS NE2 N Y N 127 HIS OXT O N N 128 HIS H H N N 129 HIS H2 H N N 130 HIS HA H N N 131 HIS HB2 H N N 132 HIS HB3 H N N 133 HIS HD1 H N N 134 HIS HD2 H N N 135 HIS HE1 H N N 136 HIS HE2 H N N 137 HIS HXT H N N 138 HOH O O N N 139 HOH H1 H N N 140 HOH H2 H N N 141 ILE N N N N 142 ILE CA C N S 143 ILE C C N N 144 ILE O O N N 145 ILE CB C N S 146 ILE CG1 C N N 147 ILE CG2 C N N 148 ILE CD1 C N N 149 ILE OXT O N N 150 ILE H H N N 151 ILE H2 H N N 152 ILE HA H N N 153 ILE HB H N N 154 ILE HG12 H N N 155 ILE HG13 H N N 156 ILE HG21 H N N 157 ILE HG22 H N N 158 ILE HG23 H N N 159 ILE HD11 H N N 160 ILE HD12 H N N 161 ILE HD13 H N N 162 ILE HXT H N N 163 LEU N N N N 164 LEU CA C N S 165 LEU C C N N 166 LEU O O N N 167 LEU CB C N N 168 LEU CG C N N 169 LEU CD1 C N N 170 LEU CD2 C N N 171 LEU OXT O N N 172 LEU H H N N 173 LEU H2 H N N 174 LEU HA H N N 175 LEU HB2 H N N 176 LEU HB3 H N N 177 LEU HG H N N 178 LEU HD11 H N N 179 LEU HD12 H N N 180 LEU HD13 H N N 181 LEU HD21 H N N 182 LEU HD22 H N N 183 LEU HD23 H N N 184 LEU HXT H N N 185 LYS N N N N 186 LYS CA C N S 187 LYS C C N N 188 LYS O O N N 189 LYS CB C N N 190 LYS CG C N N 191 LYS CD C N N 192 LYS CE C N N 193 LYS NZ N N N 194 LYS OXT O N N 195 LYS H H N N 196 LYS H2 H N N 197 LYS HA H N N 198 LYS HB2 H N N 199 LYS HB3 H N N 200 LYS HG2 H N N 201 LYS HG3 H N N 202 LYS HD2 H N N 203 LYS HD3 H N N 204 LYS HE2 H N N 205 LYS HE3 H N N 206 LYS HZ1 H N N 207 LYS HZ2 H N N 208 LYS HZ3 H N N 209 LYS HXT H N N 210 SER N N N N 211 SER CA C N S 212 SER C C N N 213 SER O O N N 214 SER CB C N N 215 SER OG O N N 216 SER OXT O N N 217 SER H H N N 218 SER H2 H N N 219 SER HA H N N 220 SER HB2 H N N 221 SER HB3 H N N 222 SER HG H N N 223 SER HXT H N N 224 TRP N N N N 225 TRP CA C N S 226 TRP C C N N 227 TRP O O N N 228 TRP CB C N N 229 TRP CG C Y N 230 TRP CD1 C Y N 231 TRP CD2 C Y N 232 TRP NE1 N Y N 233 TRP CE2 C Y N 234 TRP CE3 C Y N 235 TRP CZ2 C Y N 236 TRP CZ3 C Y N 237 TRP CH2 C Y N 238 TRP OXT O N N 239 TRP H H N N 240 TRP H2 H N N 241 TRP HA H N N 242 TRP HB2 H N N 243 TRP HB3 H N N 244 TRP HD1 H N N 245 TRP HE1 H N N 246 TRP HE3 H N N 247 TRP HZ2 H N N 248 TRP HZ3 H N N 249 TRP HH2 H N N 250 TRP HXT H N N 251 VAL N N N N 252 VAL CA C N S 253 VAL C C N N 254 VAL O O N N 255 VAL CB C N N 256 VAL CG1 C N N 257 VAL CG2 C N N 258 VAL OXT O N N 259 VAL H H N N 260 VAL H2 H N N 261 VAL HA H N N 262 VAL HB H N N 263 VAL HG11 H N N 264 VAL HG12 H N N 265 VAL HG13 H N N 266 VAL HG21 H N N 267 VAL HG22 H N N 268 VAL HG23 H N N 269 VAL HXT H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 CYS N CA sing N N 61 CYS N H sing N N 62 CYS N H2 sing N N 63 CYS CA C sing N N 64 CYS CA CB sing N N 65 CYS CA HA sing N N 66 CYS C O doub N N 67 CYS C OXT sing N N 68 CYS CB SG sing N N 69 CYS CB HB2 sing N N 70 CYS CB HB3 sing N N 71 CYS SG HG sing N N 72 CYS OXT HXT sing N N 73 GLN N CA sing N N 74 GLN N H sing N N 75 GLN N H2 sing N N 76 GLN CA C sing N N 77 GLN CA CB sing N N 78 GLN CA HA sing N N 79 GLN C O doub N N 80 GLN C OXT sing N N 81 GLN CB CG sing N N 82 GLN CB HB2 sing N N 83 GLN CB HB3 sing N N 84 GLN CG CD sing N N 85 GLN CG HG2 sing N N 86 GLN CG HG3 sing N N 87 GLN CD OE1 doub N N 88 GLN CD NE2 sing N N 89 GLN NE2 HE21 sing N N 90 GLN NE2 HE22 sing N N 91 GLN OXT HXT sing N N 92 GLU N CA sing N N 93 GLU N H sing N N 94 GLU N H2 sing N N 95 GLU CA C sing N N 96 GLU CA CB sing N N 97 GLU CA HA sing N N 98 GLU C O doub N N 99 GLU C OXT sing N N 100 GLU CB CG sing N N 101 GLU CB HB2 sing N N 102 GLU CB HB3 sing N N 103 GLU CG CD sing N N 104 GLU CG HG2 sing N N 105 GLU CG HG3 sing N N 106 GLU CD OE1 doub N N 107 GLU CD OE2 sing N N 108 GLU OE2 HE2 sing N N 109 GLU OXT HXT sing N N 110 HIS N CA sing N N 111 HIS N H sing N N 112 HIS N H2 sing N N 113 HIS CA C sing N N 114 HIS CA CB sing N N 115 HIS CA HA sing N N 116 HIS C O doub N N 117 HIS C OXT sing N N 118 HIS CB CG sing N N 119 HIS CB HB2 sing N N 120 HIS CB HB3 sing N N 121 HIS CG ND1 sing Y N 122 HIS CG CD2 doub Y N 123 HIS ND1 CE1 doub Y N 124 HIS ND1 HD1 sing N N 125 HIS CD2 NE2 sing Y N 126 HIS CD2 HD2 sing N N 127 HIS CE1 NE2 sing Y N 128 HIS CE1 HE1 sing N N 129 HIS NE2 HE2 sing N N 130 HIS OXT HXT sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 ILE N CA sing N N 134 ILE N H sing N N 135 ILE N H2 sing N N 136 ILE CA C sing N N 137 ILE CA CB sing N N 138 ILE CA HA sing N N 139 ILE C O doub N N 140 ILE C OXT sing N N 141 ILE CB CG1 sing N N 142 ILE CB CG2 sing N N 143 ILE CB HB sing N N 144 ILE CG1 CD1 sing N N 145 ILE CG1 HG12 sing N N 146 ILE CG1 HG13 sing N N 147 ILE CG2 HG21 sing N N 148 ILE CG2 HG22 sing N N 149 ILE CG2 HG23 sing N N 150 ILE CD1 HD11 sing N N 151 ILE CD1 HD12 sing N N 152 ILE CD1 HD13 sing N N 153 ILE OXT HXT sing N N 154 LEU N CA sing N N 155 LEU N H sing N N 156 LEU N H2 sing N N 157 LEU CA C sing N N 158 LEU CA CB sing N N 159 LEU CA HA sing N N 160 LEU C O doub N N 161 LEU C OXT sing N N 162 LEU CB CG sing N N 163 LEU CB HB2 sing N N 164 LEU CB HB3 sing N N 165 LEU CG CD1 sing N N 166 LEU CG CD2 sing N N 167 LEU CG HG sing N N 168 LEU CD1 HD11 sing N N 169 LEU CD1 HD12 sing N N 170 LEU CD1 HD13 sing N N 171 LEU CD2 HD21 sing N N 172 LEU CD2 HD22 sing N N 173 LEU CD2 HD23 sing N N 174 LEU OXT HXT sing N N 175 LYS N CA sing N N 176 LYS N H sing N N 177 LYS N H2 sing N N 178 LYS CA C sing N N 179 LYS CA CB sing N N 180 LYS CA HA sing N N 181 LYS C O doub N N 182 LYS C OXT sing N N 183 LYS CB CG sing N N 184 LYS CB HB2 sing N N 185 LYS CB HB3 sing N N 186 LYS CG CD sing N N 187 LYS CG HG2 sing N N 188 LYS CG HG3 sing N N 189 LYS CD CE sing N N 190 LYS CD HD2 sing N N 191 LYS CD HD3 sing N N 192 LYS CE NZ sing N N 193 LYS CE HE2 sing N N 194 LYS CE HE3 sing N N 195 LYS NZ HZ1 sing N N 196 LYS NZ HZ2 sing N N 197 LYS NZ HZ3 sing N N 198 LYS OXT HXT sing N N 199 SER N CA sing N N 200 SER N H sing N N 201 SER N H2 sing N N 202 SER CA C sing N N 203 SER CA CB sing N N 204 SER CA HA sing N N 205 SER C O doub N N 206 SER C OXT sing N N 207 SER CB OG sing N N 208 SER CB HB2 sing N N 209 SER CB HB3 sing N N 210 SER OG HG sing N N 211 SER OXT HXT sing N N 212 TRP N CA sing N N 213 TRP N H sing N N 214 TRP N H2 sing N N 215 TRP CA C sing N N 216 TRP CA CB sing N N 217 TRP CA HA sing N N 218 TRP C O doub N N 219 TRP C OXT sing N N 220 TRP CB CG sing N N 221 TRP CB HB2 sing N N 222 TRP CB HB3 sing N N 223 TRP CG CD1 doub Y N 224 TRP CG CD2 sing Y N 225 TRP CD1 NE1 sing Y N 226 TRP CD1 HD1 sing N N 227 TRP CD2 CE2 doub Y N 228 TRP CD2 CE3 sing Y N 229 TRP NE1 CE2 sing Y N 230 TRP NE1 HE1 sing N N 231 TRP CE2 CZ2 sing Y N 232 TRP CE3 CZ3 doub Y N 233 TRP CE3 HE3 sing N N 234 TRP CZ2 CH2 doub Y N 235 TRP CZ2 HZ2 sing N N 236 TRP CZ3 CH2 sing Y N 237 TRP CZ3 HZ3 sing N N 238 TRP CH2 HH2 sing N N 239 TRP OXT HXT sing N N 240 VAL N CA sing N N 241 VAL N H sing N N 242 VAL N H2 sing N N 243 VAL CA C sing N N 244 VAL CA CB sing N N 245 VAL CA HA sing N N 246 VAL C O doub N N 247 VAL C OXT sing N N 248 VAL CB CG1 sing N N 249 VAL CB CG2 sing N N 250 VAL CB HB sing N N 251 VAL CG1 HG11 sing N N 252 VAL CG1 HG12 sing N N 253 VAL CG1 HG13 sing N N 254 VAL CG2 HG21 sing N N 255 VAL CG2 HG22 sing N N 256 VAL CG2 HG23 sing N N 257 VAL OXT HXT sing N N 258 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'calculated structure' # _atom_sites.entry_id 1KD8 _atom_sites.fract_transf_matrix[1][1] 0.011622 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012758 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_