HEADER TRANSFERASE 03-DEC-01 1KIK TITLE SH3 DOMAIN OF LYMPHOCYTE SPECIFIC KINASE (LCK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN (RESIDUES 64-120); COMPND 5 SYNONYM: P56-LCK, LSK, T CELL-SPECIFIC PROTEIN-TYROSINE KINASE; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS SH3 DOMAIN, TYROSINE KINASE, SIGNAL TRANSDUCTION, LCK, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR L.BRIESE,D.WILLBOLD REVDAT 4 23-FEB-22 1KIK 1 REMARK REVDAT 3 24-FEB-09 1KIK 1 VERSN REVDAT 2 06-DEC-05 1KIK 1 JRNL REVDAT 1 12-DEC-01 1KIK 0 JRNL AUTH L.BRIESE,D.WILLBOLD JRNL TITL STRUCTURE DETERMINATION OF HUMAN LCK UNIQUE AND SH3 DOMAINS JRNL TITL 2 BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY. JRNL REF BMC STRUCT.BIOL. V. 3 3 2003 JRNL REFN ESSN 1472-6807 JRNL PMID 12734017 JRNL DOI 10.1186/1472-6807-3-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 5.3B, CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KIK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000014994. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 20; 20 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1,6MM LCK UNIQUE AND SH3 REMARK 210 DOMAINS, U-15N,13C; 20 MM SODIUM REMARK 210 ACETATE; 1MM LCK UNIQUE AND SH3 REMARK 210 DOMAINS, U-15N; 20 MM SODIUM REMARK 210 ACETATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROSA 2.9, XEASY 1.3.13, ARIA REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 80 O PHE A 110 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 74 126.22 -37.21 REMARK 500 1 SER A 102 167.90 -49.35 REMARK 500 1 PRO A 112 108.34 -52.64 REMARK 500 1 ASN A 114 30.36 -98.97 REMARK 500 1 LYS A 118 139.25 -39.67 REMARK 500 1 ALA A 119 54.44 -69.35 REMARK 500 2 PRO A 74 120.45 -37.65 REMARK 500 2 SER A 102 167.81 -49.98 REMARK 500 2 PRO A 112 109.77 -53.62 REMARK 500 2 ASN A 114 30.87 -99.12 REMARK 500 2 LYS A 118 139.09 -39.59 REMARK 500 2 ALA A 119 53.98 -69.01 REMARK 500 3 PRO A 74 132.43 -36.34 REMARK 500 3 SER A 75 -43.65 -130.53 REMARK 500 3 GLN A 93 36.70 -140.25 REMARK 500 3 LYS A 118 138.91 -39.53 REMARK 500 3 ALA A 119 54.38 -69.25 REMARK 500 4 PRO A 74 129.36 -37.22 REMARK 500 4 SER A 102 167.17 -49.08 REMARK 500 4 LYS A 118 139.03 -39.59 REMARK 500 4 ALA A 119 54.51 -69.19 REMARK 500 5 PRO A 74 133.58 -37.14 REMARK 500 5 SER A 102 166.66 -49.51 REMARK 500 5 LYS A 118 137.98 -39.36 REMARK 500 5 ALA A 119 54.51 -69.08 REMARK 500 6 PRO A 74 127.56 -36.83 REMARK 500 6 SER A 102 167.64 -49.42 REMARK 500 6 LYS A 118 139.48 -39.46 REMARK 500 6 ALA A 119 53.82 -69.84 REMARK 500 7 PRO A 74 131.69 -36.27 REMARK 500 7 SER A 75 -43.22 -130.10 REMARK 500 7 SER A 102 168.40 -49.41 REMARK 500 7 LYS A 118 138.94 -39.58 REMARK 500 7 ALA A 119 54.28 -69.61 REMARK 500 8 PRO A 74 122.14 -37.04 REMARK 500 8 SER A 102 167.43 -49.57 REMARK 500 8 LYS A 118 140.43 -39.65 REMARK 500 8 ALA A 119 50.89 -69.80 REMARK 500 9 PRO A 74 120.02 -37.72 REMARK 500 9 SER A 102 167.75 -49.86 REMARK 500 9 ASN A 114 31.63 -98.81 REMARK 500 9 LYS A 118 138.58 -39.40 REMARK 500 9 ALA A 119 54.41 -69.56 REMARK 500 10 PRO A 74 124.46 -36.92 REMARK 500 10 SER A 102 167.70 -49.69 REMARK 500 10 LYS A 118 138.51 -39.38 REMARK 500 10 ALA A 119 54.77 -69.32 REMARK 500 11 PRO A 74 123.93 -36.77 REMARK 500 11 SER A 102 167.71 -49.25 REMARK 500 11 PRO A 112 109.95 -51.68 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LCK RELATED DB: PDB REMARK 900 SH3-SH2 DOMAIN FRAGMENT OF HUMAN P56-LCK TYROSINE KINASE COMPLEXED REMARK 900 WITH THE 10 RESIDUE SYNTHETIC PHOSPHOTYROSYL PEPTIDE TEGQPYQPQPA REMARK 900 COMPLEX (KINASE/PEPTIDE) REMARK 900 RELATED ID: 1H92 RELATED DB: PDB REMARK 900 SH3 DOMAIN OF HUMAN LCK TYROSINE KINASE REMARK 900 RELATED ID: 1LCJ RELATED DB: PDB REMARK 900 SH2 (SRC HOMOLOGY-2) DOMAIN OF HUMAN P56-LCK TYROSINE KINASE REMARK 900 COMPLEXED WITH THE 11 RESIDUE PHOSPHOTYROSYL PEPTIDE EPQPYEEIPIYL REMARK 900 COMPLEX (KINASE/PEPTIDE) REMARK 900 RELATED ID: 1QPC RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN REMARK 900 COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE REMARK 900 INHIBITORS DBREF 1KIK A 64 120 UNP P06239 LCK_HUMAN 63 119 SEQRES 1 A 57 ASN LEU VAL ILE ALA LEU HIS SER TYR GLU PRO SER HIS SEQRES 2 A 57 ASP GLY ASP LEU GLY PHE GLU LYS GLY GLU GLN LEU ARG SEQRES 3 A 57 ILE LEU GLU GLN SER GLY GLU TRP TRP LYS ALA GLN SER SEQRES 4 A 57 LEU THR THR GLY GLN GLU GLY PHE ILE PRO PHE ASN PHE SEQRES 5 A 57 VAL ALA LYS ALA ASN SHEET 1 A 5 GLU A 108 PRO A 112 0 SHEET 2 A 5 TRP A 97 SER A 102 -1 N TRP A 98 O ILE A 111 SHEET 3 A 5 GLN A 87 GLU A 92 -1 N ARG A 89 O GLN A 101 SHEET 4 A 5 LEU A 65 ALA A 68 -1 N VAL A 66 O LEU A 88 SHEET 5 A 5 VAL A 116 LYS A 118 -1 O ALA A 117 N ILE A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1