HEADER OXIDOREDUCTASE 21-DEC-01 1KOL TITLE CRYSTAL STRUCTURE OF FORMALDEHYDE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE-INDEPENDENT FORMALDEHYDE DEHYDROGENASE; COMPND 5 EC: 1.2.1.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TANAKA,Y.KUSAKABE,K.ITO,T.YOSHIMOTO,K.T.NAKAMURA REVDAT 4 13-MAR-24 1KOL 1 REMARK LINK REVDAT 3 13-JUL-11 1KOL 1 VERSN REVDAT 2 24-FEB-09 1KOL 1 VERSN REVDAT 1 11-DEC-02 1KOL 0 JRNL AUTH N.TANAKA,Y.KUSAKABE,K.ITO,T.YOSHIMOTO,K.T.NAKAMURA JRNL TITL CRYSTAL STRUCTURE OF FORMALDEHYDE DEHYDROGENASE FROM JRNL TITL 2 PSEUDOMONAS PUTIDA: THE STRUCTURAL ORIGIN OF THE TIGHTLY JRNL TITL 3 BOUND COFACTOR IN NICOTINOPROTEIN DEHYDROGENASES JRNL REF J.MOL.BIOL. V. 324 519 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12445786 JRNL DOI 10.1016/S0022-2836(02)01066-5 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 89312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 4714 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.009 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM SULFATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.58400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.16800 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 127.16800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.58400 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER. TWO SUBUNITS (1/2 REMARK 300 TETRAMER) EXIST IN AN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -42.84300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 74.20625 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 190.75200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 398 REMARK 465 SER B 1 REMARK 465 ALA B 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1524 O HOH A 1630 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 267 CD - NE - CZ ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 374 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 101 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE B 146 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 355 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 40.51 -109.73 REMARK 500 ARG A 99 31.21 -140.55 REMARK 500 ARG A 154 -61.72 -27.67 REMARK 500 ASP A 169 -69.05 -161.15 REMARK 500 ALA A 278 89.39 -152.90 REMARK 500 ASN A 357 64.73 -116.41 REMARK 500 ASP B 153 134.41 -37.63 REMARK 500 ARG B 154 -63.93 -26.32 REMARK 500 ASP B 169 -66.88 -160.38 REMARK 500 ASN B 357 68.42 -110.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 114.0 REMARK 620 3 ASP A 169 OD1 118.1 97.0 REMARK 620 4 HOH A1404 O 111.3 98.0 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 108.5 REMARK 620 3 CYS A 103 SG 120.9 105.0 REMARK 620 4 CYS A 111 SG 99.4 117.0 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 114.7 REMARK 620 3 ASP B 169 OD1 116.9 98.5 REMARK 620 4 HOH B2404 O 114.8 98.2 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 109.5 REMARK 620 3 CYS B 103 SG 120.4 105.8 REMARK 620 4 CYS B 111 SG 98.8 116.8 106.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2403 DBREF 1KOL A 1 398 UNP P46154 FADH_PSEPU 1 398 DBREF 1KOL B 1 398 UNP P46154 FADH_PSEPU 1 398 SEQADV 1KOL VAL A 139 UNP P46154 LEU 139 SEE REMARK 999 SEQADV 1KOL VAL B 139 UNP P46154 LEU 139 SEE REMARK 999 SEQRES 1 A 398 SER GLY ASN ARG GLY VAL VAL TYR LEU GLY SER GLY LYS SEQRES 2 A 398 VAL GLU VAL GLN LYS ILE ASP TYR PRO LYS MET GLN ASP SEQRES 3 A 398 PRO ARG GLY LYS LYS ILE GLU HIS GLY VAL ILE LEU LYS SEQRES 4 A 398 VAL VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS MET SEQRES 5 A 398 VAL ARG GLY ARG THR THR ALA GLN VAL GLY LEU VAL LEU SEQRES 6 A 398 GLY HIS GLU ILE THR GLY GLU VAL ILE GLU LYS GLY ARG SEQRES 7 A 398 ASP VAL GLU ASN LEU GLN ILE GLY ASP LEU VAL SER VAL SEQRES 8 A 398 PRO PHE ASN VAL ALA CYS GLY ARG CYS ARG SER CYS LYS SEQRES 9 A 398 GLU MET HIS THR GLY VAL CYS LEU THR VAL ASN PRO ALA SEQRES 10 A 398 ARG ALA GLY GLY ALA TYR GLY TYR VAL ASP MET GLY ASP SEQRES 11 A 398 TRP THR GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 A 398 ALA ASP PHE ASN LEU LEU LYS LEU PRO ASP ARG ASP LYS SEQRES 13 A 398 ALA MET GLU LYS ILE ARG ASP LEU THR CYS LEU SER ASP SEQRES 14 A 398 ILE LEU PRO THR GLY TYR HIS GLY ALA VAL THR ALA GLY SEQRES 15 A 398 VAL GLY PRO GLY SER THR VAL TYR VAL ALA GLY ALA GLY SEQRES 16 A 398 PRO VAL GLY LEU ALA ALA ALA ALA SER ALA ARG LEU LEU SEQRES 17 A 398 GLY ALA ALA VAL VAL ILE VAL GLY ASP LEU ASN PRO ALA SEQRES 18 A 398 ARG LEU ALA HIS ALA LYS ALA GLN GLY PHE GLU ILE ALA SEQRES 19 A 398 ASP LEU SER LEU ASP THR PRO LEU HIS GLU GLN ILE ALA SEQRES 20 A 398 ALA LEU LEU GLY GLU PRO GLU VAL ASP CYS ALA VAL ASP SEQRES 21 A 398 ALA VAL GLY PHE GLU ALA ARG GLY HIS GLY HIS GLU GLY SEQRES 22 A 398 ALA LYS HIS GLU ALA PRO ALA THR VAL LEU ASN SER LEU SEQRES 23 A 398 MET GLN VAL THR ARG VAL ALA GLY LYS ILE GLY ILE PRO SEQRES 24 A 398 GLY LEU TYR VAL THR GLU ASP PRO GLY ALA VAL ASP ALA SEQRES 25 A 398 ALA ALA LYS ILE GLY SER LEU SER ILE ARG PHE GLY LEU SEQRES 26 A 398 GLY TRP ALA LYS SER HIS SER PHE HIS THR GLY GLN THR SEQRES 27 A 398 PRO VAL MET LYS TYR ASN ARG ALA LEU MET GLN ALA ILE SEQRES 28 A 398 MET TRP ASP ARG ILE ASN ILE ALA GLU VAL VAL GLY VAL SEQRES 29 A 398 GLN VAL ILE SER LEU ASP ASP ALA PRO ARG GLY TYR GLY SEQRES 30 A 398 GLU PHE ASP ALA GLY VAL PRO LYS LYS PHE VAL ILE ASP SEQRES 31 A 398 PRO HIS LYS THR PHE SER ALA ALA SEQRES 1 B 398 SER GLY ASN ARG GLY VAL VAL TYR LEU GLY SER GLY LYS SEQRES 2 B 398 VAL GLU VAL GLN LYS ILE ASP TYR PRO LYS MET GLN ASP SEQRES 3 B 398 PRO ARG GLY LYS LYS ILE GLU HIS GLY VAL ILE LEU LYS SEQRES 4 B 398 VAL VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS MET SEQRES 5 B 398 VAL ARG GLY ARG THR THR ALA GLN VAL GLY LEU VAL LEU SEQRES 6 B 398 GLY HIS GLU ILE THR GLY GLU VAL ILE GLU LYS GLY ARG SEQRES 7 B 398 ASP VAL GLU ASN LEU GLN ILE GLY ASP LEU VAL SER VAL SEQRES 8 B 398 PRO PHE ASN VAL ALA CYS GLY ARG CYS ARG SER CYS LYS SEQRES 9 B 398 GLU MET HIS THR GLY VAL CYS LEU THR VAL ASN PRO ALA SEQRES 10 B 398 ARG ALA GLY GLY ALA TYR GLY TYR VAL ASP MET GLY ASP SEQRES 11 B 398 TRP THR GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 B 398 ALA ASP PHE ASN LEU LEU LYS LEU PRO ASP ARG ASP LYS SEQRES 13 B 398 ALA MET GLU LYS ILE ARG ASP LEU THR CYS LEU SER ASP SEQRES 14 B 398 ILE LEU PRO THR GLY TYR HIS GLY ALA VAL THR ALA GLY SEQRES 15 B 398 VAL GLY PRO GLY SER THR VAL TYR VAL ALA GLY ALA GLY SEQRES 16 B 398 PRO VAL GLY LEU ALA ALA ALA ALA SER ALA ARG LEU LEU SEQRES 17 B 398 GLY ALA ALA VAL VAL ILE VAL GLY ASP LEU ASN PRO ALA SEQRES 18 B 398 ARG LEU ALA HIS ALA LYS ALA GLN GLY PHE GLU ILE ALA SEQRES 19 B 398 ASP LEU SER LEU ASP THR PRO LEU HIS GLU GLN ILE ALA SEQRES 20 B 398 ALA LEU LEU GLY GLU PRO GLU VAL ASP CYS ALA VAL ASP SEQRES 21 B 398 ALA VAL GLY PHE GLU ALA ARG GLY HIS GLY HIS GLU GLY SEQRES 22 B 398 ALA LYS HIS GLU ALA PRO ALA THR VAL LEU ASN SER LEU SEQRES 23 B 398 MET GLN VAL THR ARG VAL ALA GLY LYS ILE GLY ILE PRO SEQRES 24 B 398 GLY LEU TYR VAL THR GLU ASP PRO GLY ALA VAL ASP ALA SEQRES 25 B 398 ALA ALA LYS ILE GLY SER LEU SER ILE ARG PHE GLY LEU SEQRES 26 B 398 GLY TRP ALA LYS SER HIS SER PHE HIS THR GLY GLN THR SEQRES 27 B 398 PRO VAL MET LYS TYR ASN ARG ALA LEU MET GLN ALA ILE SEQRES 28 B 398 MET TRP ASP ARG ILE ASN ILE ALA GLU VAL VAL GLY VAL SEQRES 29 B 398 GLN VAL ILE SER LEU ASP ASP ALA PRO ARG GLY TYR GLY SEQRES 30 B 398 GLU PHE ASP ALA GLY VAL PRO LYS LYS PHE VAL ILE ASP SEQRES 31 B 398 PRO HIS LYS THR PHE SER ALA ALA HET ZN A1001 1 HET ZN A1002 1 HET SO4 A1003 5 HET NAD A1403 44 HET ZN B1003 1 HET ZN B1004 1 HET SO4 B1002 5 HET NAD B2403 44 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 NAD 2(C21 H27 N7 O14 P2) FORMUL 11 HOH *967(H2 O) HELIX 1 1 CYS A 46 ARG A 54 1 9 HELIX 2 2 CYS A 100 GLU A 105 1 6 HELIX 3 3 HIS A 107 CYS A 111 5 5 HELIX 4 4 TYR A 143 LEU A 148 1 6 HELIX 5 5 ASP A 153 LYS A 160 1 8 HELIX 6 6 LYS A 160 THR A 165 1 6 HELIX 7 7 CYS A 166 SER A 168 5 3 HELIX 8 8 ASP A 169 ALA A 181 1 13 HELIX 9 9 GLY A 195 LEU A 208 1 14 HELIX 10 10 ASN A 219 GLN A 229 1 11 HELIX 11 11 PRO A 241 GLY A 251 1 11 HELIX 12 12 GLU A 272 HIS A 276 5 5 HELIX 13 13 ALA A 280 THR A 290 1 11 HELIX 14 14 ASP A 311 ILE A 316 1 6 HELIX 15 15 ARG A 322 LYS A 329 1 8 HELIX 16 16 PRO A 339 TRP A 353 1 15 HELIX 17 17 ASN A 357 GLY A 363 1 7 HELIX 18 18 SER A 368 ASP A 370 5 3 HELIX 19 19 ASP A 371 GLY A 382 1 12 HELIX 20 20 CYS B 46 ARG B 54 1 9 HELIX 21 21 CYS B 100 GLU B 105 1 6 HELIX 22 22 HIS B 107 CYS B 111 5 5 HELIX 23 23 TYR B 143 LEU B 148 1 6 HELIX 24 24 ASP B 153 LYS B 160 1 8 HELIX 25 25 LYS B 160 THR B 165 1 6 HELIX 26 26 CYS B 166 SER B 168 5 3 HELIX 27 27 ASP B 169 ALA B 181 1 13 HELIX 28 28 GLY B 195 LEU B 208 1 14 HELIX 29 29 ASN B 219 GLN B 229 1 11 HELIX 30 30 PRO B 241 GLY B 251 1 11 HELIX 31 31 GLU B 272 HIS B 276 5 5 HELIX 32 32 ALA B 280 THR B 290 1 11 HELIX 33 33 ALA B 313 GLY B 317 5 5 HELIX 34 34 ARG B 322 LYS B 329 1 8 HELIX 35 35 PRO B 339 LYS B 342 5 4 HELIX 36 36 TYR B 343 TRP B 353 1 11 HELIX 37 37 ASN B 357 GLY B 363 1 7 HELIX 38 38 SER B 368 ASP B 370 5 3 HELIX 39 39 ASP B 371 ALA B 381 1 11 SHEET 1 A 2 ASN A 3 GLY A 10 0 SHEET 2 A 2 LYS A 13 ILE A 19 -1 O GLU A 15 N VAL A 7 SHEET 1 B 5 LEU A 149 LYS A 150 0 SHEET 2 B 5 LEU A 88 SER A 90 -1 N SER A 90 O LEU A 149 SHEET 3 B 5 ILE A 69 LYS A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 B 5 VAL A 36 ASN A 44 -1 N LYS A 39 O GLU A 72 SHEET 5 B 5 TYR A 138 VAL A 141 -1 O VAL A 139 N LEU A 38 SHEET 1 C 6 LEU A 149 LYS A 150 0 SHEET 2 C 6 LEU A 88 SER A 90 -1 N SER A 90 O LEU A 149 SHEET 3 C 6 ILE A 69 LYS A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 C 6 VAL A 36 ASN A 44 -1 N LYS A 39 O GLU A 72 SHEET 5 C 6 LYS A 386 ILE A 389 -1 O ILE A 389 N THR A 43 SHEET 6 C 6 VAL A 364 ILE A 367 1 N GLN A 365 O VAL A 388 SHEET 1 D 2 ASN A 94 VAL A 95 0 SHEET 2 D 2 GLY A 121 ALA A 122 -1 O GLY A 121 N VAL A 95 SHEET 1 E 6 GLU A 232 ASP A 235 0 SHEET 2 E 6 VAL A 212 ASP A 217 1 N VAL A 215 O GLU A 232 SHEET 3 E 6 THR A 188 ALA A 192 1 N VAL A 191 O ILE A 214 SHEET 4 E 6 CYS A 257 ASP A 260 1 O VAL A 259 N ALA A 192 SHEET 5 E 6 LYS A 295 ILE A 298 1 O GLY A 297 N ALA A 258 SHEET 6 E 6 SER A 332 THR A 335 1 O HIS A 334 N ILE A 298 SHEET 1 F 2 ASN B 3 GLY B 10 0 SHEET 2 F 2 LYS B 13 ILE B 19 -1 O GLU B 15 N VAL B 7 SHEET 1 G 5 LEU B 149 LYS B 150 0 SHEET 2 G 5 LEU B 88 SER B 90 -1 N SER B 90 O LEU B 149 SHEET 3 G 5 ILE B 69 LYS B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 G 5 VAL B 36 ASN B 44 -1 N LYS B 39 O GLU B 72 SHEET 5 G 5 TYR B 138 VAL B 141 -1 O VAL B 139 N LEU B 38 SHEET 1 H 6 LEU B 149 LYS B 150 0 SHEET 2 H 6 LEU B 88 SER B 90 -1 N SER B 90 O LEU B 149 SHEET 3 H 6 ILE B 69 LYS B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 H 6 VAL B 36 ASN B 44 -1 N LYS B 39 O GLU B 72 SHEET 5 H 6 LYS B 386 ILE B 389 -1 O ILE B 389 N THR B 43 SHEET 6 H 6 VAL B 364 ILE B 367 1 N ILE B 367 O VAL B 388 SHEET 1 I 2 ASN B 94 VAL B 95 0 SHEET 2 I 2 GLY B 121 ALA B 122 -1 O GLY B 121 N VAL B 95 SHEET 1 J 6 GLU B 232 ASP B 235 0 SHEET 2 J 6 VAL B 212 ASP B 217 1 N VAL B 215 O GLU B 232 SHEET 3 J 6 THR B 188 ALA B 192 1 N VAL B 191 O GLY B 216 SHEET 4 J 6 CYS B 257 ASP B 260 1 O VAL B 259 N ALA B 192 SHEET 5 J 6 LYS B 295 ILE B 298 1 O GLY B 297 N ALA B 258 SHEET 6 J 6 SER B 332 THR B 335 1 O SER B 332 N ILE B 296 LINK SG CYS A 46 ZN ZN A1001 1555 1555 2.29 LINK NE2 HIS A 67 ZN ZN A1001 1555 1555 2.01 LINK SG CYS A 97 ZN ZN A1002 1555 1555 2.33 LINK SG CYS A 100 ZN ZN A1002 1555 1555 2.31 LINK SG CYS A 103 ZN ZN A1002 1555 1555 2.27 LINK SG CYS A 111 ZN ZN A1002 1555 1555 2.31 LINK OD1 ASP A 169 ZN ZN A1001 1555 1555 1.92 LINK ZN ZN A1001 O HOH A1404 1555 1555 1.96 LINK SG CYS B 46 ZN ZN B1003 1555 1555 2.27 LINK NE2 HIS B 67 ZN ZN B1003 1555 1555 2.06 LINK SG CYS B 97 ZN ZN B1004 1555 1555 2.32 LINK SG CYS B 100 ZN ZN B1004 1555 1555 2.28 LINK SG CYS B 103 ZN ZN B1004 1555 1555 2.32 LINK SG CYS B 111 ZN ZN B1004 1555 1555 2.37 LINK OD1 ASP B 169 ZN ZN B1003 1555 1555 1.92 LINK ZN ZN B1003 O HOH B2404 1555 1555 2.00 SITE 1 AC1 5 CYS A 46 HIS A 67 ASP A 169 NAD A1403 SITE 2 AC1 5 HOH A1404 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 5 CYS B 46 HIS B 67 ASP B 169 NAD B2403 SITE 2 AC3 5 HOH B2404 SITE 1 AC4 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC5 8 PRO A 241 LEU A 242 HIS A 269 HOH A1548 SITE 2 AC5 8 HOH A1618 HOH A1634 HOH A1735 HOH A1836 SITE 1 AC6 7 PRO B 241 LEU B 242 HIS B 269 HOH B2656 SITE 2 AC6 7 HOH B2667 HOH B2718 HOH B2846 SITE 1 AC7 35 GLY A 47 SER A 48 GLN A 50 HIS A 51 SITE 2 AC7 35 PHE A 93 ASP A 169 THR A 173 GLY A 193 SITE 3 AC7 35 GLY A 195 PRO A 196 VAL A 197 GLY A 216 SITE 4 AC7 35 ASP A 217 LEU A 218 ARG A 222 ALA A 261 SITE 5 AC7 35 VAL A 262 ALA A 266 ARG A 267 HIS A 269 SITE 6 AC7 35 VAL A 282 PRO A 299 LEU A 301 TRP A 327 SITE 7 AC7 35 GLY A 336 GLN A 337 THR A 338 PHE A 379 SITE 8 AC7 35 ZN A1001 HOH A1409 HOH A1415 HOH A1426 SITE 9 AC7 35 HOH A1450 HOH A1467 HOH A1579 SITE 1 AC8 40 GLY B 47 SER B 48 GLN B 50 HIS B 51 SITE 2 AC8 40 PHE B 93 ASP B 169 THR B 173 GLY B 193 SITE 3 AC8 40 GLY B 195 PRO B 196 VAL B 197 GLY B 216 SITE 4 AC8 40 ASP B 217 LEU B 218 ARG B 222 LEU B 236 SITE 5 AC8 40 ALA B 261 VAL B 262 ALA B 266 ARG B 267 SITE 6 AC8 40 HIS B 269 VAL B 282 PRO B 299 LEU B 301 SITE 7 AC8 40 TRP B 327 GLY B 336 GLN B 337 THR B 338 SITE 8 AC8 40 PHE B 379 ZN B1003 HOH B2404 HOH B2422 SITE 9 AC8 40 HOH B2425 HOH B2427 HOH B2482 HOH B2490 SITE 10 AC8 40 HOH B2503 HOH B2602 HOH B2670 HOH B2691 CRYST1 85.686 85.686 190.752 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011670 0.006740 0.000000 0.00000 SCALE2 0.000000 0.013480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005240 0.00000