data_1KS4 # _entry.id 1KS4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KS4 RCSB RCSB015284 WWPDB D_1000015284 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1KS5 _pdbx_database_related.details 'Structure of Aspergillus niger Endoglucanase' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KS4 _pdbx_database_status.recvd_initial_deposition_date 2002-01-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Khademi, S.' 1 'Zhang, D.' 2 'Swanson, S.M.' 3 'Wartenberg, A.' 4 'Witte, C.' 5 'Meyer, E.F.' 6 # _citation.id primary _citation.title 'Determination of the structure of an endoglucanase from Aspergillus niger and its mode of inhibition by palladium chloride.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 58 _citation.page_first 660 _citation.page_last 667 _citation.year 2002 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11914491 _citation.pdbx_database_id_DOI 10.1107/S0907444902003360 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Khademi, S.' 1 primary 'Zhang, D.' 2 primary 'Swanson, S.M.' 3 primary 'Wartenberg, A.' 4 primary 'Witte, K.' 5 primary 'Meyer, E.F.' 6 # _cell.entry_id 1KS4 _cell.length_a 131.088 _cell.length_b 131.088 _cell.length_c 71.985 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1KS4 _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Endoglucanase A' 24283.145 1 3.2.1.4 ? 'Aspergillus niger Endoglucanase' ? 2 non-polymer syn 'PALLADIUM ION' 106.420 3 ? ? ? ? 3 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN ; _entity_poly.pdbx_seq_one_letter_code_can ;QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 THR n 1 3 MET n 1 4 CYS n 1 5 SER n 1 6 GLN n 1 7 TYR n 1 8 ASP n 1 9 SER n 1 10 ALA n 1 11 SER n 1 12 SER n 1 13 PRO n 1 14 PRO n 1 15 TYR n 1 16 SER n 1 17 VAL n 1 18 ASN n 1 19 GLN n 1 20 ASN n 1 21 LEU n 1 22 TRP n 1 23 GLY n 1 24 GLU n 1 25 TYR n 1 26 GLN n 1 27 GLY n 1 28 THR n 1 29 GLY n 1 30 SER n 1 31 GLN n 1 32 CYS n 1 33 VAL n 1 34 TYR n 1 35 VAL n 1 36 ASP n 1 37 LYS n 1 38 LEU n 1 39 SER n 1 40 SER n 1 41 SER n 1 42 GLY n 1 43 ALA n 1 44 SER n 1 45 TRP n 1 46 HIS n 1 47 THR n 1 48 GLU n 1 49 TRP n 1 50 THR n 1 51 TRP n 1 52 SER n 1 53 GLY n 1 54 GLY n 1 55 GLU n 1 56 GLY n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 SER n 1 61 TYR n 1 62 SER n 1 63 ASN n 1 64 SER n 1 65 GLY n 1 66 VAL n 1 67 THR n 1 68 PHE n 1 69 ASN n 1 70 LYS n 1 71 LYS n 1 72 LEU n 1 73 VAL n 1 74 SER n 1 75 ASP n 1 76 VAL n 1 77 SER n 1 78 SER n 1 79 ILE n 1 80 PRO n 1 81 THR n 1 82 SER n 1 83 VAL n 1 84 GLU n 1 85 TRP n 1 86 LYS n 1 87 GLN n 1 88 ASP n 1 89 ASN n 1 90 THR n 1 91 ASN n 1 92 VAL n 1 93 ASN n 1 94 ALA n 1 95 ASP n 1 96 VAL n 1 97 ALA n 1 98 TYR n 1 99 ASP n 1 100 LEU n 1 101 PHE n 1 102 THR n 1 103 ALA n 1 104 ALA n 1 105 ASN n 1 106 VAL n 1 107 ASP n 1 108 HIS n 1 109 ALA n 1 110 THR n 1 111 SER n 1 112 SER n 1 113 GLY n 1 114 ASP n 1 115 TYR n 1 116 GLU n 1 117 LEU n 1 118 MET n 1 119 ILE n 1 120 TRP n 1 121 LEU n 1 122 ALA n 1 123 ARG n 1 124 TYR n 1 125 GLY n 1 126 ASN n 1 127 ILE n 1 128 GLN n 1 129 PRO n 1 130 ILE n 1 131 GLY n 1 132 LYS n 1 133 GLN n 1 134 ILE n 1 135 ALA n 1 136 THR n 1 137 ALA n 1 138 THR n 1 139 VAL n 1 140 GLY n 1 141 GLY n 1 142 LYS n 1 143 SER n 1 144 TRP n 1 145 GLU n 1 146 VAL n 1 147 TRP n 1 148 TYR n 1 149 GLY n 1 150 SER n 1 151 THR n 1 152 THR n 1 153 GLN n 1 154 ALA n 1 155 GLY n 1 156 ALA n 1 157 GLU n 1 158 GLN n 1 159 ARG n 1 160 THR n 1 161 TYR n 1 162 SER n 1 163 PHE n 1 164 VAL n 1 165 SER n 1 166 GLU n 1 167 SER n 1 168 PRO n 1 169 ILE n 1 170 ASN n 1 171 SER n 1 172 TYR n 1 173 SER n 1 174 GLY n 1 175 ASP n 1 176 ILE n 1 177 ASN n 1 178 ALA n 1 179 PHE n 1 180 PHE n 1 181 SER n 1 182 TYR n 1 183 LEU n 1 184 THR n 1 185 GLN n 1 186 ASN n 1 187 GLN n 1 188 GLY n 1 189 PHE n 1 190 PRO n 1 191 ALA n 1 192 SER n 1 193 SER n 1 194 GLN n 1 195 TYR n 1 196 LEU n 1 197 ILE n 1 198 ASN n 1 199 LEU n 1 200 GLN n 1 201 PHE n 1 202 GLY n 1 203 THR n 1 204 GLU n 1 205 ALA n 1 206 PHE n 1 207 THR n 1 208 GLY n 1 209 GLY n 1 210 PRO n 1 211 ALA n 1 212 THR n 1 213 PHE n 1 214 THR n 1 215 VAL n 1 216 ASP n 1 217 ASN n 1 218 TRP n 1 219 THR n 1 220 ALA n 1 221 SER n 1 222 VAL n 1 223 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Aspergillus niger' _entity_src_nat.pdbx_ncbi_taxonomy_id 5061 _entity_src_nat.genus Aspergillus _entity_src_nat.species ? _entity_src_nat.strain 'CBS 554.65' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O74705_ASPNG _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN ; _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_accession O74705 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KS4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O74705 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 223 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PD non-polymer . 'PALLADIUM ION' ? 'Pd 2' 106.420 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KS4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.36 _exptl_crystal.density_Matthews 3.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.pdbx_details 'PEG 4000, Sodium Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2030K' _diffrn_detector.pdbx_collection_date 1994-10-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic, Model 140-000023' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1KS4 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 10691 _reflns.number_all 11142 _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.7 _reflns.B_iso_Wilson_estimate 22.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 89.5 _reflns_shell.Rmerge_I_obs 0.09 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1KS4 _refine.ls_number_reflns_obs 10691 _refine.ls_number_reflns_all 11142 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 95.9 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all 0.218 _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1104 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 43.4 _refine.aniso_B[1][1] -5.03 _refine.aniso_B[2][2] -5.03 _refine.aniso_B[3][3] 10.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.339 _refine.solvent_model_param_bsol 33.743 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KS4 _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.35 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1717 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 1754 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.70 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.76 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.17 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.21 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.59 _refine_ls_shell.number_reflns_R_work 871 _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.percent_reflns_obs 90 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_obs 971 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file protein_rep.param _pdbx_xplor_file.topol_file protein.top _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1KS4 _struct.title 'The structure of Aspergillus niger endoglucanase-palladium complex' _struct.pdbx_descriptor 'Aspergillus niger Endoglucanase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KS4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Endoglucanase, Cellulase, Aspergillus niger, family 9, (alpha/alpha)6, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 23 ? GLY A 27 ? GLY A 23 GLY A 27 5 ? 5 HELX_P HELX_P2 2 SER A 74 ? VAL A 76 ? SER A 74 VAL A 76 5 ? 3 HELX_P HELX_P3 3 ILE A 176 ? GLN A 187 ? ILE A 176 GLN A 187 1 ? 12 HELX_P HELX_P4 4 PRO A 190 ? SER A 193 ? PRO A 190 SER A 193 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 4 A CYS 32 1_555 ? ? ? ? ? ? ? 2.026 ? metalc1 metalc ? ? A VAL 33 N ? ? ? 1_555 D PD . PD ? ? A VAL 33 A PD 226 1_555 ? ? ? ? ? ? ? 2.337 ? metalc2 metalc ? ? A HIS 46 NE2 ? ? ? 1_555 C PD . PD ? ? A HIS 46 A PD 225 1_555 ? ? ? ? ? ? ? 2.371 ? metalc3 metalc ? ? A GLU 116 OE1 ? ? ? 1_555 B PD . PD ? ? A GLU 116 A PD 224 1_555 ? ? ? ? ? ? ? 2.314 ? metalc4 metalc ? ? A MET 118 SD ? ? ? 1_555 B PD . PD ? ? A MET 118 A PD 224 1_555 ? ? ? ? ? ? ? 2.129 ? metalc5 metalc ? ? A VAL 33 O ? ? ? 1_555 D PD . PD ? ? A VAL 33 A PD 226 1_555 ? ? ? ? ? ? ? 2.460 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 13 A . ? PRO 13 A PRO 14 A ? PRO 14 A 1 0.12 2 GLY 209 A . ? GLY 209 A PRO 210 A ? PRO 210 A 1 -0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 9 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 2 ? MET A 3 ? THR A 2 MET A 3 A 2 THR A 28 ? SER A 39 ? THR A 28 SER A 39 A 3 GLY A 42 ? SER A 52 ? GLY A 42 SER A 52 A 4 PRO A 210 ? ALA A 220 ? PRO A 210 ALA A 220 A 5 PRO A 80 ? ASP A 88 ? PRO A 80 ASP A 88 A 6 SER A 171 ? ASP A 175 ? SER A 171 ASP A 175 B 1 TYR A 7 ? SER A 12 ? TYR A 7 SER A 12 B 2 TYR A 15 ? ASN A 20 ? TYR A 15 ASN A 20 B 3 SER A 60 ? VAL A 66 ? SER A 60 VAL A 66 B 4 TYR A 195 ? PHE A 206 ? TYR A 195 PHE A 206 B 5 ASN A 93 ? ALA A 103 ? ASN A 93 ALA A 103 B 6 TYR A 115 ? TRP A 120 ? TYR A 115 TRP A 120 B 7 ALA A 156 ? VAL A 164 ? ALA A 156 VAL A 164 B 8 LYS A 142 ? GLN A 153 ? LYS A 142 GLN A 153 B 9 LYS A 132 ? VAL A 139 ? LYS A 132 VAL A 139 C 1 TYR A 195 ? LEU A 196 ? TYR A 195 LEU A 196 C 2 LYS A 71 ? LEU A 72 ? LYS A 71 LEU A 72 D 1 ASN A 93 ? ALA A 97 ? ASN A 93 ALA A 97 D 2 ALA A 122 ? TYR A 124 ? ALA A 122 TYR A 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MET A 3 ? O MET A 3 N VAL A 33 ? N VAL A 33 A 2 3 O LYS A 37 ? O LYS A 37 N SER A 44 ? N SER A 44 A 3 4 O THR A 47 ? O THR A 47 N PHE A 213 ? N PHE A 213 A 4 5 O THR A 214 ? O THR A 214 N LYS A 86 ? N LYS A 86 A 5 6 O VAL A 83 ? O VAL A 83 N TYR A 172 ? N TYR A 172 B 1 2 O ASP A 8 ? O ASP A 8 N GLN A 19 ? N GLN A 19 B 2 3 O ASN A 20 ? O ASN A 20 N TYR A 61 ? N TYR A 61 B 3 4 O SER A 64 ? O SER A 64 N PHE A 201 ? N PHE A 201 B 4 5 O GLY A 202 ? O GLY A 202 N ALA A 97 ? N ALA A 97 B 5 6 O LEU A 100 ? O LEU A 100 N LEU A 117 ? N LEU A 117 B 6 7 O MET A 118 ? O MET A 118 N PHE A 163 ? N PHE A 163 B 7 8 O SER A 162 ? O SER A 162 N TRP A 147 ? N TRP A 147 B 8 9 O TRP A 144 ? O TRP A 144 N ALA A 137 ? N ALA A 137 C 1 2 N LEU A 196 ? N LEU A 196 O LYS A 71 ? O LYS A 71 D 1 2 O ALA A 94 ? O ALA A 94 N TYR A 124 ? N TYR A 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PD A 224' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PD A 225' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE PD A 226' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 116 ? GLU A 116 . ? 1_555 ? 2 AC1 3 MET A 118 ? MET A 118 . ? 1_555 ? 3 AC1 3 GLU A 204 ? GLU A 204 . ? 1_555 ? 4 AC2 2 TYR A 34 ? TYR A 34 . ? 1_555 ? 5 AC2 2 HIS A 46 ? HIS A 46 . ? 1_555 ? 6 AC3 7 GLN A 1 ? GLN A 1 . ? 1_555 ? 7 AC3 7 THR A 2 ? THR A 2 . ? 1_555 ? 8 AC3 7 MET A 3 ? MET A 3 . ? 1_555 ? 9 AC3 7 CYS A 4 ? CYS A 4 . ? 1_555 ? 10 AC3 7 CYS A 32 ? CYS A 32 . ? 1_555 ? 11 AC3 7 VAL A 33 ? VAL A 33 . ? 1_555 ? 12 AC3 7 TYR A 34 ? TYR A 34 . ? 1_555 ? # _database_PDB_matrix.entry_id 1KS4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KS4 _atom_sites.fract_transf_matrix[1][1] 0.007628 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013892 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O PD S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 TRP 144 144 144 TRP TRP A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 TRP 147 147 147 TRP TRP A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 TYR 172 172 172 TYR TYR A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ASN 177 177 177 ASN ASN A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 GLN 185 185 185 GLN GLN A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 GLN 194 194 194 GLN GLN A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 GLN 200 200 200 GLN GLN A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 THR 207 207 207 THR THR A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 PRO 210 210 210 PRO PRO A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 VAL 215 215 215 VAL VAL A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 TRP 218 218 218 TRP TRP A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 SER 221 221 221 SER SER A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 ASN 223 223 223 ASN ASN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A VAL 33 ? A VAL 33 ? 1_555 PD ? D PD . ? A PD 226 ? 1_555 O ? A VAL 33 ? A VAL 33 ? 1_555 71.4 ? 2 OE1 ? A GLU 116 ? A GLU 116 ? 1_555 PD ? B PD . ? A PD 224 ? 1_555 SD ? A MET 118 ? A MET 118 ? 1_555 108.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX AUTHOR PROVIDED HELIX RECORDS ; 700 ;SHEET AUTHOR PROVIDED SHEET RECORDS ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? -92.83 32.57 2 1 MET A 3 ? ? -63.04 62.01 3 1 PRO A 13 ? ? -33.67 133.33 4 1 ASN A 89 ? ? 95.11 96.48 5 1 ASP A 107 ? ? -79.44 25.73 6 1 SER A 112 ? ? -161.38 -117.08 7 1 ASP A 114 ? ? -132.41 -43.59 8 1 ALA A 135 ? ? -178.99 -178.89 9 1 SER A 193 ? ? -144.58 22.23 10 1 PHE A 206 ? ? -99.27 -65.78 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PALLADIUM ION' PD 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PD 1 224 224 PD PD A . C 2 PD 1 225 225 PD PD A . D 2 PD 1 226 226 PD PD A . E 3 HOH 1 227 227 HOH HOH A . E 3 HOH 2 228 228 HOH HOH A . E 3 HOH 3 229 229 HOH HOH A . E 3 HOH 4 230 230 HOH HOH A . E 3 HOH 5 231 231 HOH HOH A . E 3 HOH 6 232 232 HOH HOH A . E 3 HOH 7 233 233 HOH HOH A . E 3 HOH 8 234 234 HOH HOH A . E 3 HOH 9 235 235 HOH HOH A . E 3 HOH 10 236 236 HOH HOH A . E 3 HOH 11 237 237 HOH HOH A . E 3 HOH 12 238 238 HOH HOH A . E 3 HOH 13 239 239 HOH HOH A . E 3 HOH 14 240 240 HOH HOH A . E 3 HOH 15 241 241 HOH HOH A . E 3 HOH 16 242 242 HOH HOH A . E 3 HOH 17 243 243 HOH HOH A . E 3 HOH 18 244 244 HOH HOH A . E 3 HOH 19 245 245 HOH HOH A . E 3 HOH 20 246 246 HOH HOH A . E 3 HOH 21 247 247 HOH HOH A . E 3 HOH 22 248 248 HOH HOH A . E 3 HOH 23 249 249 HOH HOH A . E 3 HOH 24 250 250 HOH HOH A . E 3 HOH 25 251 251 HOH HOH A . E 3 HOH 26 252 252 HOH HOH A . E 3 HOH 27 253 253 HOH HOH A . E 3 HOH 28 254 254 HOH HOH A . E 3 HOH 29 255 255 HOH HOH A . E 3 HOH 30 256 256 HOH HOH A . E 3 HOH 31 257 257 HOH HOH A . E 3 HOH 32 258 258 HOH HOH A . E 3 HOH 33 259 259 HOH HOH A . E 3 HOH 34 260 260 HOH HOH A . #