HEADER REPLICATION/DNA 14-JAN-02 1KSX TITLE CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE TITLE 2 PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E1 RECOGNITION SEQUENCE; COMPND 3 CHAIN: C, G, K, O; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REPLICATION PROTEIN E1; COMPND 7 CHAIN: A, B, E, F, I, J, M, N; COMPND 8 FRAGMENT: DNA-BINDING DOMAIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BOVINE PAPILLOMAVIRUS; SOURCE 5 ORGANISM_TAXID: 10571; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11CGST KEYWDS PAPILLOMAVIRUS, DNA-BINDING DOMAIN, REPLICATION, INITIATOR PROTEIN, KEYWDS 2 HELICASE, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.J.ENEMARK,A.STENLUND,L.JOSHUA-TOR REVDAT 3 16-AUG-23 1KSX 1 SEQADV REVDAT 2 24-FEB-09 1KSX 1 VERSN REVDAT 1 15-MAR-02 1KSX 0 JRNL AUTH E.J.ENEMARK,A.STENLUND,L.JOSHUA-TOR JRNL TITL CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF JRNL TITL 2 THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX. JRNL REF EMBO J. V. 21 1487 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 11889054 JRNL DOI 10.1093/EMBOJ/21.6.1487 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 130431.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 31865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4449 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 237 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9312 REMARK 3 NUCLEIC ACID ATOMS : 1712 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.60000 REMARK 3 B22 (A**2) : -16.20000 REMARK 3 B33 (A**2) : -15.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 12.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM SIGMAA (A) : 0.72 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 10.220; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 15.210; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 17.400; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 24.340; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 23.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT IS REMARK 3 LESS THAN SPECIFIED IN REMARK 3. THE VALUES LISTED IN REMARK 3 REMARK 3 ARE 4-FOLD GREATER (REFLECTING THE 4-FOLD STRICT REMARK 3 NCS). 2328 PROTEIN ATOMS, 428 NUCLEIC ACID ATOMS, AND 5 REMARK 3 SOLVENT ATOMS WERE USED IN REFINEMENT. REMARK 4 REMARK 4 1KSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35038 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1F08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CA(CF3COO)2, DTT, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.82500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: E1 MULTIMERIZATION OCCURS UPON BINDING TO THE ADJACENT REMARK 300 SITES OF THE TARGET DNA SEQUENCE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, O, I, J, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 ARG A 158 REMARK 465 GLY B 156 REMARK 465 SER B 157 REMARK 465 ARG B 158 REMARK 465 GLY E 156 REMARK 465 SER E 157 REMARK 465 ARG E 158 REMARK 465 GLY F 156 REMARK 465 SER F 157 REMARK 465 ARG F 158 REMARK 465 GLY I 156 REMARK 465 SER I 157 REMARK 465 ARG I 158 REMARK 465 GLY J 156 REMARK 465 SER J 157 REMARK 465 ARG J 158 REMARK 465 GLY M 156 REMARK 465 SER M 157 REMARK 465 ARG M 158 REMARK 465 GLY N 156 REMARK 465 SER N 157 REMARK 465 ARG N 158 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN B 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN E 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN F 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN I 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN J 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN M 303 CA C CB CG OD1 ND2 OXT REMARK 480 ASN N 303 CA C CB CG OD1 ND2 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C7 DT G 21 CZ PHE I 162 2.07 REMARK 500 C7 DT G 21 CE2 PHE I 162 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 293 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO F 293 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO J 293 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO N 293 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -9.14 -51.36 REMARK 500 GLN A 214 26.38 -148.68 REMARK 500 GLU A 244 -77.49 -53.07 REMARK 500 ASN A 255 57.75 73.59 REMARK 500 GLU A 259 -18.78 -49.48 REMARK 500 SER A 281 -14.94 -44.55 REMARK 500 LEU A 292 123.96 -33.38 REMARK 500 PRO A 293 153.40 -46.02 REMARK 500 LEU A 302 89.86 -67.04 REMARK 500 LEU B 172 43.10 73.10 REMARK 500 CYS B 173 128.14 176.45 REMARK 500 HIS B 225 -167.25 -165.50 REMARK 500 GLU B 226 26.45 -70.70 REMARK 500 ASN B 255 71.58 66.70 REMARK 500 LEU B 271 -45.95 -21.50 REMARK 500 SER B 272 -73.99 -48.75 REMARK 500 ALA B 285 34.50 -80.37 REMARK 500 HIS B 289 120.55 -170.61 REMARK 500 ALA B 298 -73.34 -43.22 REMARK 500 GLN B 299 -8.47 -46.47 REMARK 500 LYS E 213 -9.19 -51.33 REMARK 500 GLN E 214 26.39 -148.65 REMARK 500 GLU E 244 -77.53 -53.06 REMARK 500 ASN E 255 57.71 73.61 REMARK 500 GLU E 259 -18.83 -49.45 REMARK 500 SER E 281 -14.92 -44.56 REMARK 500 LEU E 292 123.92 -33.32 REMARK 500 PRO E 293 153.36 -46.00 REMARK 500 LEU E 302 89.83 -67.06 REMARK 500 LEU F 172 43.05 73.11 REMARK 500 CYS F 173 128.13 176.45 REMARK 500 HIS F 225 -167.19 -165.47 REMARK 500 GLU F 226 26.47 -70.73 REMARK 500 ASN F 255 71.60 66.72 REMARK 500 LEU F 271 -45.91 -21.55 REMARK 500 SER F 272 -74.00 -48.74 REMARK 500 ALA F 285 34.47 -80.33 REMARK 500 HIS F 289 120.59 -170.68 REMARK 500 ALA F 298 -73.33 -43.19 REMARK 500 GLN F 299 -8.45 -46.46 REMARK 500 LYS I 213 -9.23 -51.31 REMARK 500 GLN I 214 26.39 -148.67 REMARK 500 GLU I 244 -77.50 -53.07 REMARK 500 ASN I 255 57.74 73.59 REMARK 500 GLU I 259 -18.71 -49.55 REMARK 500 SER I 281 -14.86 -44.59 REMARK 500 LEU I 292 123.98 -33.40 REMARK 500 PRO I 293 153.36 -46.00 REMARK 500 LEU I 302 89.83 -67.05 REMARK 500 LEU J 172 43.12 73.09 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KSY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE REMARK 900 PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX REMARK 900 RELATED ID: 1F08 RELATED DB: PDB REMARK 900 BPV E1 DNA-BINDING DOMAIN NOT BOUND TO DNA DBREF 1KSX A 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX B 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX E 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX F 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX I 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX J 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX M 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX N 159 303 UNP P03116 VE1_BPV1 159 303 DBREF 1KSX C 1 21 PDB 1KSX 1KSX 1 21 DBREF 1KSX G 1 21 PDB 1KSX 1KSX 1 21 DBREF 1KSX K 1 21 PDB 1KSX 1KSX 1 21 DBREF 1KSX O 1 21 PDB 1KSX 1KSX 1 21 SEQADV 1KSX GLY A 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER A 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG A 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY B 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER B 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG B 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY E 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER E 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG E 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY F 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER F 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG F 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY I 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER I 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG I 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY J 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER J 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG J 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY M 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER M 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG M 158 UNP P03116 CLONING ARTIFACT SEQADV 1KSX GLY N 156 UNP P03116 CLONING ARTIFACT SEQADV 1KSX SER N 157 UNP P03116 CLONING ARTIFACT SEQADV 1KSX ARG N 158 UNP P03116 CLONING ARTIFACT SEQRES 1 C 21 DA DT DA DA DT DT DG DT DT DG DT DT DA SEQRES 2 C 21 DA DC DA DA DC DA DA DT SEQRES 1 G 21 DA DT DA DA DT DT DG DT DT DG DT DT DA SEQRES 2 G 21 DA DC DA DA DC DA DA DT SEQRES 1 K 21 DA DT DA DA DT DT DG DT DT DG DT DT DA SEQRES 2 K 21 DA DC DA DA DC DA DA DT SEQRES 1 O 21 DA DT DA DA DT DT DG DT DT DG DT DT DA SEQRES 2 O 21 DA DC DA DA DC DA DA DT SEQRES 1 A 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 A 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 A 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 A 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 A 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 A 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 A 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 A 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 A 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 A 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 A 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 A 148 GLN THR THR LEU ASN SEQRES 1 B 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 B 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 B 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 B 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 B 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 B 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 B 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 B 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 B 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 B 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 B 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 B 148 GLN THR THR LEU ASN SEQRES 1 E 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 E 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 E 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 E 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 E 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 E 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 E 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 E 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 E 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 E 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 E 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 E 148 GLN THR THR LEU ASN SEQRES 1 F 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 F 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 F 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 F 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 F 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 F 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 F 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 F 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 F 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 F 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 F 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 F 148 GLN THR THR LEU ASN SEQRES 1 I 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 I 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 I 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 I 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 I 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 I 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 I 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 I 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 I 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 I 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 I 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 I 148 GLN THR THR LEU ASN SEQRES 1 J 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 J 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 J 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 J 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 J 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 J 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 J 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 J 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 J 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 J 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 J 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 J 148 GLN THR THR LEU ASN SEQRES 1 M 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 M 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 M 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 M 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 M 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 M 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 M 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 M 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 M 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 M 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 M 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 M 148 GLN THR THR LEU ASN SEQRES 1 N 148 GLY SER ARG ALA THR VAL PHE LYS LEU GLY LEU PHE LYS SEQRES 2 N 148 SER LEU PHE LEU CYS SER PHE HIS ASP ILE THR ARG LEU SEQRES 3 N 148 PHE LYS ASN ASP LYS THR THR ASN GLN GLN TRP VAL LEU SEQRES 4 N 148 ALA VAL PHE GLY LEU ALA GLU VAL PHE PHE GLU ALA SER SEQRES 5 N 148 PHE GLU LEU LEU LYS LYS GLN CYS SER PHE LEU GLN MET SEQRES 6 N 148 GLN LYS ARG SER HIS GLU GLY GLY THR CYS ALA VAL TYR SEQRES 7 N 148 LEU ILE CYS PHE ASN THR ALA LYS SER ARG GLU THR VAL SEQRES 8 N 148 ARG ASN LEU MET ALA ASN MET LEU ASN VAL ARG GLU GLU SEQRES 9 N 148 CYS LEU MET LEU GLN PRO PRO LYS ILE ARG GLY LEU SER SEQRES 10 N 148 ALA ALA LEU PHE TRP PHE LYS SER SER LEU SER PRO ALA SEQRES 11 N 148 THR LEU LYS HIS GLY ALA LEU PRO GLU TRP ILE ARG ALA SEQRES 12 N 148 GLN THR THR LEU ASN FORMUL 13 HOH *20(H2 O) HELIX 1 1 ALA A 159 LEU A 172 1 14 HELIX 2 2 PHE A 175 THR A 179 5 5 HELIX 3 3 ALA A 200 LYS A 213 1 14 HELIX 4 4 SER A 242 ASN A 255 1 14 HELIX 5 5 ARG A 257 GLU A 259 5 3 HELIX 6 6 GLY A 270 SER A 283 1 14 HELIX 7 7 PRO A 293 ALA A 298 1 6 HELIX 8 8 ALA B 159 LEU B 172 1 14 HELIX 9 9 SER B 174 THR B 179 5 6 HELIX 10 10 ALA B 200 LYS B 212 1 13 HELIX 11 11 ARG B 243 ASN B 255 1 13 HELIX 12 12 ARG B 257 GLU B 259 5 3 HELIX 13 13 GLY B 270 SER B 281 1 12 HELIX 14 14 PRO B 293 GLN B 299 1 7 HELIX 15 15 ALA E 159 LEU E 172 1 14 HELIX 16 16 PHE E 175 THR E 179 5 5 HELIX 17 17 ALA E 200 LYS E 213 1 14 HELIX 18 18 SER E 242 ASN E 255 1 14 HELIX 19 19 ARG E 257 GLU E 259 5 3 HELIX 20 20 GLY E 270 SER E 283 1 14 HELIX 21 21 PRO E 293 ALA E 298 1 6 HELIX 22 22 ALA F 159 LEU F 172 1 14 HELIX 23 23 SER F 174 THR F 179 5 6 HELIX 24 24 ALA F 200 LYS F 212 1 13 HELIX 25 25 ARG F 243 ASN F 255 1 13 HELIX 26 26 ARG F 257 GLU F 259 5 3 HELIX 27 27 GLY F 270 SER F 281 1 12 HELIX 28 28 PRO F 293 GLN F 299 1 7 HELIX 29 29 ALA I 159 LEU I 172 1 14 HELIX 30 30 PHE I 175 THR I 179 5 5 HELIX 31 31 ALA I 200 LYS I 213 1 14 HELIX 32 32 SER I 242 ASN I 255 1 14 HELIX 33 33 ARG I 257 GLU I 259 5 3 HELIX 34 34 GLY I 270 SER I 283 1 14 HELIX 35 35 PRO I 293 ALA I 298 1 6 HELIX 36 36 ALA J 159 LEU J 172 1 14 HELIX 37 37 SER J 174 THR J 179 5 6 HELIX 38 38 ALA J 200 LYS J 212 1 13 HELIX 39 39 ARG J 243 ASN J 255 1 13 HELIX 40 40 ARG J 257 GLU J 259 5 3 HELIX 41 41 GLY J 270 SER J 281 1 12 HELIX 42 42 PRO J 293 GLN J 299 1 7 HELIX 43 43 ALA M 159 LEU M 172 1 14 HELIX 44 44 PHE M 175 THR M 179 5 5 HELIX 45 45 ALA M 200 LYS M 213 1 14 HELIX 46 46 SER M 242 ASN M 255 1 14 HELIX 47 47 ARG M 257 GLU M 259 5 3 HELIX 48 48 GLY M 270 SER M 283 1 14 HELIX 49 49 PRO M 293 ALA M 298 1 6 HELIX 50 50 ALA N 159 LEU N 172 1 14 HELIX 51 51 SER N 174 THR N 179 5 6 HELIX 52 52 ALA N 200 LYS N 212 1 13 HELIX 53 53 ARG N 243 ASN N 255 1 13 HELIX 54 54 ARG N 257 GLU N 259 5 3 HELIX 55 55 GLY N 270 SER N 281 1 12 HELIX 56 56 PRO N 293 GLN N 299 1 7 SHEET 1 A 5 LEU A 261 GLN A 264 0 SHEET 2 A 5 ASN A 189 PHE A 197 -1 N ALA A 195 O MET A 262 SHEET 3 A 5 GLY A 228 LYS A 241 -1 O LYS A 241 N ASN A 189 SHEET 4 A 5 CYS A 215 HIS A 225 -1 N ARG A 223 O CYS A 230 SHEET 5 A 5 LEU A 287 HIS A 289 -1 O LEU A 287 N MET A 220 SHEET 1 B 5 LEU B 261 GLN B 264 0 SHEET 2 B 5 THR B 188 PHE B 197 -1 N ALA B 195 O MET B 262 SHEET 3 B 5 GLY B 228 SER B 242 -1 O ILE B 235 N TRP B 192 SHEET 4 B 5 CYS B 215 HIS B 225 -1 N GLN B 221 O VAL B 232 SHEET 5 B 5 LEU B 287 HIS B 289 -1 O HIS B 289 N LEU B 218 SHEET 1 C 5 LEU E 261 GLN E 264 0 SHEET 2 C 5 ASN E 189 PHE E 197 -1 N ALA E 195 O MET E 262 SHEET 3 C 5 GLY E 228 LYS E 241 -1 O LYS E 241 N ASN E 189 SHEET 4 C 5 CYS E 215 HIS E 225 -1 N ARG E 223 O CYS E 230 SHEET 5 C 5 LEU E 287 HIS E 289 -1 O LEU E 287 N MET E 220 SHEET 1 D 5 LEU F 261 GLN F 264 0 SHEET 2 D 5 THR F 188 PHE F 197 -1 N ALA F 195 O MET F 262 SHEET 3 D 5 GLY F 228 SER F 242 -1 O ILE F 235 N TRP F 192 SHEET 4 D 5 CYS F 215 HIS F 225 -1 N GLN F 221 O VAL F 232 SHEET 5 D 5 LEU F 287 HIS F 289 -1 O HIS F 289 N LEU F 218 SHEET 1 E 5 LEU I 261 GLN I 264 0 SHEET 2 E 5 ASN I 189 PHE I 197 -1 N ALA I 195 O MET I 262 SHEET 3 E 5 GLY I 228 LYS I 241 -1 O LYS I 241 N ASN I 189 SHEET 4 E 5 CYS I 215 HIS I 225 -1 N ARG I 223 O CYS I 230 SHEET 5 E 5 LEU I 287 HIS I 289 -1 O LEU I 287 N MET I 220 SHEET 1 F 5 LEU J 261 GLN J 264 0 SHEET 2 F 5 THR J 188 PHE J 197 -1 N ALA J 195 O MET J 262 SHEET 3 F 5 GLY J 228 SER J 242 -1 O ILE J 235 N TRP J 192 SHEET 4 F 5 CYS J 215 HIS J 225 -1 N GLN J 221 O VAL J 232 SHEET 5 F 5 LEU J 287 HIS J 289 -1 O HIS J 289 N LEU J 218 SHEET 1 G 5 LEU M 261 GLN M 264 0 SHEET 2 G 5 ASN M 189 PHE M 197 -1 N ALA M 195 O MET M 262 SHEET 3 G 5 GLY M 228 LYS M 241 -1 O LYS M 241 N ASN M 189 SHEET 4 G 5 CYS M 215 HIS M 225 -1 N ARG M 223 O CYS M 230 SHEET 5 G 5 LEU M 287 HIS M 289 -1 O LEU M 287 N MET M 220 SHEET 1 H 5 LEU N 261 GLN N 264 0 SHEET 2 H 5 THR N 188 PHE N 197 -1 N ALA N 195 O MET N 262 SHEET 3 H 5 GLY N 228 SER N 242 -1 O ILE N 235 N TRP N 192 SHEET 4 H 5 CYS N 215 HIS N 225 -1 N GLN N 221 O VAL N 232 SHEET 5 H 5 LEU N 287 HIS N 289 -1 O HIS N 289 N LEU N 218 CRYST1 84.246 103.650 124.996 90.00 99.53 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011870 0.000000 0.001993 0.00000 SCALE2 0.000000 0.009648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008112 0.00000