HEADER HYDROLASE/HYDROLASE INHIBITOR 22-JAN-02 1KUG TITLE CRYSTAL STRUCTURE OF A TAIWAN HABU VENOM METALLOPROTEINASE COMPLEXED TITLE 2 WITH ITS ENDOGENOUS INHIBITOR PENW COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPROTEINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC PROTEASE DOMAIN; COMPND 5 SYNONYM: ATROLYSIN E; COMPND 6 EC: 3.4.24.44; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ENW; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTOBOTHROPS MUCROSQUAMATUS; SOURCE 3 ORGANISM_TAXID: 103944; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: THE INHIBITOR PENW WAS SYNTHESIZED BY SOLID-PHASE SOURCE 7 METHOD. KEYWDS ALPHA/BETA PROTEIN, RETRO-BINDING MANNER, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.F.HUANG,S.H.CHIOU,T.P.KO,A.H.J.WANG REVDAT 7 16-OCT-24 1KUG 1 REMARK LINK REVDAT 6 25-DEC-19 1KUG 1 DBREF SEQADV SEQRES LINK REVDAT 5 16-APR-14 1KUG 1 REMARK REVDAT 4 13-JUL-11 1KUG 1 VERSN REVDAT 3 24-FEB-09 1KUG 1 VERSN REVDAT 2 01-APR-03 1KUG 1 JRNL REVDAT 1 10-JUL-02 1KUG 0 JRNL AUTH K.F.HUANG,S.H.CHIOU,T.P.KO,A.H.WANG JRNL TITL DETERMINANTS OF THE INHIBITION OF A TAIWAN HABU VENOM JRNL TITL 2 METALLOPROTEINASE BY ITS ENDOGENOUS INHIBITORS REVEALED BY JRNL TITL 3 X-RAY CRYSTALLOGRAPHY AND SYNTHETIC INHIBITOR ANALOGUES. JRNL REF EUR.J.BIOCHEM. V. 269 3047 2002 JRNL REFN ISSN 0014-2956 JRNL PMID 12071970 JRNL DOI 10.1046/J.1432-1033.2002.02982.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.F.HUANG,C.C.HUNG,F.M.PAN,L.P.CHOW,A.TSUGITA,S.H.CHIOU REMARK 1 TITL CHARACTERIZATION OF MULTIPLE METALLOPROTEINASES WITH REMARK 1 TITL 2 FIBRINOGENOLYTIC ACTIVITY FROM THE VENOM OF TAIWAN HABU REMARK 1 TITL 3 (TRIMERESURUS MUCROSQUAMATUS): PROTEIN MICROSEQUENCING REMARK 1 TITL 4 COUPLED WITH CDNA SEQUENCE ANALYSIS. REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 216 223 1995 REMARK 1 REFN ISSN 0006-291X REMARK 1 DOI 10.1006/BBRC.1995.2614 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2404 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.660 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, SODIUM ACETATE, CADMIUM REMARK 280 CHLORIDE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.59650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.57550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.79825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.57550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.39475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.57550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.57550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.79825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.57550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.57550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.39475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.59650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.59650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 990 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 853 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLN A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD A 982 O HOH A 904 0.60 REMARK 500 O HOH A 341 O HOH A 827 2.03 REMARK 500 O HOH A 342 O HOH A 827 2.08 REMARK 500 O HOH A 441 O HOH A 844 2.10 REMARK 500 OE2 GLU A 11 O HOH A 341 2.11 REMARK 500 NH2 ARG A 47 O HOH A 822 2.11 REMARK 500 O HOH A 771 O HOH A 903 2.16 REMARK 500 O HOH A 351 O HOH A 472 2.17 REMARK 500 O HOH A 811 O HOH A 828 2.18 REMARK 500 O HOH A 667 O HOH A 824 2.18 REMARK 500 O HOH A 430 O HOH A 819 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 158 O HOH A 904 4454 2.02 REMARK 500 O HOH A 332 O HOH A 822 5545 2.05 REMARK 500 OD1 ASP A 156 O HOH A 904 4454 2.07 REMARK 500 O HOH A 693 O HOH A 693 8555 2.12 REMARK 500 OG1 THR A 68 O HOH A 736 5545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 137 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 CYS A 182 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 24 39.61 -95.96 REMARK 500 CYS A 119 -16.96 86.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 985 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 7 OE1 REMARK 620 2 ASN A 50 OD1 95.0 REMARK 620 3 HOH A 319 O 88.1 91.4 REMARK 620 4 HOH A 320 O 85.9 82.5 171.0 REMARK 620 5 HOH A 438 O 84.7 173.6 95.0 91.2 REMARK 620 6 HOH A 666 O 177.1 83.4 89.5 96.3 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 984 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HOH A 583 O 103.3 REMARK 620 3 HOH A 721 O 91.8 82.5 REMARK 620 4 HOH A 821 O 94.3 119.9 154.4 REMARK 620 5 HOH A 914 O 79.0 171.5 89.2 67.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 982 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 36 ND1 REMARK 620 2 ASP A 156 OD1 90.4 REMARK 620 3 ASP A 156 OD2 97.0 54.2 REMARK 620 4 ASP A 158 OD2 91.9 94.7 147.5 REMARK 620 5 HOH A 348 O 99.0 158.3 104.9 104.4 REMARK 620 6 HOH A 349 O 160.8 78.5 89.1 73.8 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 990 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 GLU A 85 OE1 55.3 REMARK 620 3 GLU A 85 OE2 73.6 128.5 REMARK 620 4 GLU A 85 OE1 129.3 174.9 55.8 REMARK 620 5 HOH A 617 O 142.3 87.0 144.0 88.4 REMARK 620 6 HOH A 617 O 143.0 87.7 143.3 87.7 0.7 REMARK 620 7 HOH A 618 O 96.7 95.5 95.9 86.4 84.7 84.6 REMARK 620 8 HOH A 618 O 93.1 83.5 94.5 93.6 82.7 82.7 167.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 991 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 GLU A 121 OE1 106.0 REMARK 620 3 HOH A 455 O 78.8 97.6 REMARK 620 4 HOH A 803 O 60.8 84.7 138.3 REMARK 620 5 HOH A 803 O 95.3 157.3 94.1 99.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 988 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 131 ND1 REMARK 620 2 HIS A 131 O 82.3 REMARK 620 3 HOH A 354 O 98.6 86.7 REMARK 620 4 HOH A 355 O 88.6 119.0 154.1 REMARK 620 5 HOH A 356 O 101.2 148.3 61.6 92.7 REMARK 620 6 HOH A 424 O 152.4 78.1 99.4 84.2 105.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 981 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS A 148 NE2 91.6 REMARK 620 3 HIS A 154 NE2 100.6 102.1 REMARK 620 4 TRP B 253 O 81.5 107.8 150.0 REMARK 620 5 TRP B 253 OXT 103.9 152.9 96.8 54.3 REMARK 620 6 HOH B 413 O 163.1 79.9 95.4 87.2 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 983 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD2 REMARK 620 2 ASP A 181 OD1 53.0 REMARK 620 3 ASP A 185 OD1 105.1 78.3 REMARK 620 4 ASP A 185 OD2 87.2 104.6 51.1 REMARK 620 5 HOH A 325 O 91.6 139.4 136.6 91.1 REMARK 620 6 HOH A 431 O 168.7 115.6 70.3 97.0 98.8 REMARK 620 7 HOH A 433 O 94.8 74.5 125.5 176.5 91.7 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 986 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 194 OD1 REMARK 620 2 ASP A 194 OD2 57.4 REMARK 620 3 HOH A 442 O 123.2 178.7 REMARK 620 4 HOH A 571 O 87.6 102.2 76.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 987 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 203 O REMARK 620 2 PRO A 203 OXT 54.9 REMARK 620 3 HOH A 392 O 151.8 99.5 REMARK 620 4 HOH A 598 O 130.5 138.8 75.8 REMARK 620 5 HOH A 746 O 72.2 126.6 133.8 71.4 REMARK 620 6 HOH A 747 O 100.5 82.1 85.7 56.9 102.1 REMARK 620 7 HOH A 837 O 147.1 152.4 54.2 50.4 79.7 101.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 989 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 380 O REMARK 620 2 HOH A 386 O 95.3 REMARK 620 3 HOH A 550 O 88.3 92.8 REMARK 620 4 HOH A 551 O 150.8 72.8 66.4 REMARK 620 5 HOH A 552 O 95.6 169.1 86.4 97.0 REMARK 620 6 HOH A 836 O 100.2 94.4 168.3 107.2 84.8 REMARK 620 7 HOH A 885 O 152.3 69.7 114.8 48.4 100.7 59.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 981 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 982 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 983 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 984 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 985 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 986 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 987 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 988 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 989 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 990 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 991 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KUF RELATED DB: PDB REMARK 900 1KUF CONTAINS THE SAME METALLOPROTEINASE WITHOUT INHIBITOR BINDING REMARK 900 RELATED ID: 1KUI RELATED DB: PDB REMARK 900 1KUI CONTAINS THE SAME PROTEIN COMPLEXED WITH PEQW. REMARK 900 RELATED ID: 1KUK RELATED DB: PDB REMARK 900 1KUK CONTAINS THE SAME PROTEIN COMPLEXED WITH PEKW. DBREF 1KUG A 1 203 UNP O57413 O57413_TRIMU 196 398 DBREF 1KUG B 251 253 PDB 1KUG 1KUG 251 253 SEQADV 1KUG TYR A 21 UNP O57413 HIS 216 CONFLICT SEQADV 1KUG ILE A 42 UNP O57413 MET 237 CONFLICT SEQADV 1KUG THR A 163 UNP O57413 ASP 358 CONFLICT SEQADV 1KUG ALA A 169 UNP O57413 PRO 364 CONFLICT SEQRES 1 A 203 GLU GLN GLN ARG PHE PRO GLN ARG TYR ILE GLU LEU ALA SEQRES 2 A 203 ILE VAL VAL ASP HIS GLY MET TYR THR LYS TYR SER SER SEQRES 3 A 203 ASN PHE LYS LYS ILE ARG LYS ARG VAL HIS GLN MET VAL SEQRES 4 A 203 SER ASN ILE ASN GLU MET CYS ARG PRO LEU ASN ILE ALA SEQRES 5 A 203 ILE THR LEU ALA LEU LEU ASP VAL TRP SER GLU LYS ASP SEQRES 6 A 203 PHE ILE THR VAL GLN ALA ASP ALA PRO THR THR ALA GLY SEQRES 7 A 203 LEU PHE GLY ASP TRP ARG GLU ARG VAL LEU LEU LYS LYS SEQRES 8 A 203 LYS ASN HIS ASP HIS ALA GLN LEU LEU THR ASP THR ASN SEQRES 9 A 203 PHE ALA ARG ASN THR ILE GLY TRP ALA TYR VAL GLY ARG SEQRES 10 A 203 MET CYS ASP GLU LYS TYR SER VAL ALA VAL VAL LYS ASP SEQRES 11 A 203 HIS SER SER LYS VAL PHE MET VAL ALA VAL THR MET THR SEQRES 12 A 203 HIS GLU LEU GLY HIS ASN LEU GLY MET GLU HIS ASP ASP SEQRES 13 A 203 LYS ASP LYS CYS LYS CYS THR THR CYS ILE MET SER ALA SEQRES 14 A 203 VAL ILE SER ASP LYS GLN SER LYS LEU PHE SER ASP CYS SEQRES 15 A 203 SER LYS ASP TYR TYR GLN THR PHE LEU THR ASN ASP ASN SEQRES 16 A 203 PRO GLN CYS ILE LEU ASN ALA PRO SEQRES 1 B 3 PCA ASN TRP MODRES 1KUG PCA B 251 GLN PYROGLUTAMIC ACID HET PCA B 251 8 HET CD A 981 1 HET CD A 982 1 HET CD A 983 1 HET CD A 984 1 HET CD A 985 1 HET CD A 986 1 HET CD A 987 1 HET CD A 988 1 HET CD A 989 1 HET CD A 990 1 HET CD A 991 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM CD CADMIUM ION FORMUL 2 PCA C5 H7 N O3 FORMUL 3 CD 11(CD 2+) FORMUL 14 HOH *630(H2 O) HELIX 1 1 ASP A 17 TYR A 24 1 8 HELIX 2 2 ASN A 27 ARG A 47 1 21 HELIX 3 3 ASP A 72 VAL A 87 1 16 HELIX 4 4 VAL A 87 LYS A 92 1 6 HELIX 5 5 PHE A 105 THR A 109 5 5 HELIX 6 6 LYS A 134 LEU A 150 1 17 HELIX 7 7 SER A 180 ASP A 194 1 15 HELIX 8 8 PRO A 196 ASN A 201 5 6 SHEET 1 A 5 ILE A 51 VAL A 60 0 SHEET 2 A 5 ARG A 8 VAL A 16 1 N LEU A 12 O THR A 54 SHEET 3 A 5 HIS A 96 THR A 101 1 O LEU A 100 N VAL A 15 SHEET 4 A 5 VAL A 125 LYS A 129 1 O VAL A 128 N LEU A 99 SHEET 5 A 5 GLY A 111 ALA A 113 -1 N TRP A 112 O VAL A 127 SSBOND 1 CYS A 119 CYS A 198 1555 1555 2.01 SSBOND 2 CYS A 160 CYS A 182 1555 1555 2.09 SSBOND 3 CYS A 162 CYS A 165 1555 1555 2.03 LINK C PCA B 251 N ASN B 252 1555 1555 1.32 LINK OE1 GLN A 7 CD CD A 985 1555 1555 2.23 LINK NE2 HIS A 18 CD CD A 984 1555 1555 2.29 LINK ND1 HIS A 36 CD CD A 982 1555 1555 2.38 LINK OD1 ASN A 50 CD CD A 985 1555 1555 2.18 LINK OE2 GLU A 85 CD CD A 990 1555 1555 2.43 LINK OE1 GLU A 85 CD CD A 990 1555 1555 2.27 LINK OE2 GLU A 85 CD CD A 990 8555 1555 2.41 LINK OE1 GLU A 85 CD CD A 990 8555 1555 2.24 LINK OE2 GLU A 85 CD CD A 991 1555 1555 2.74 LINK OE1 GLU A 121 CD CD A 991 1555 1555 2.20 LINK ND1 HIS A 131 CD CD A 988 1555 1555 2.23 LINK O HIS A 131 CD CD A 988 1555 1555 2.54 LINK NE2 HIS A 144 CD CD A 981 1555 1555 2.28 LINK NE2 HIS A 148 CD CD A 981 1555 1555 2.23 LINK NE2 HIS A 154 CD CD A 981 1555 1555 2.18 LINK OD1 ASP A 156 CD CD A 982 3555 1555 2.43 LINK OD2 ASP A 156 CD CD A 982 3555 1555 2.26 LINK OD2 ASP A 158 CD CD A 982 3555 1555 2.28 LINK OD2 ASP A 181 CD CD A 983 1555 1555 2.29 LINK OD1 ASP A 181 CD CD A 983 1555 1555 2.60 LINK OD1 ASP A 185 CD CD A 983 1555 1555 2.68 LINK OD2 ASP A 185 CD CD A 983 1555 1555 2.32 LINK OD1 ASP A 194 CD CD A 986 1555 1555 2.34 LINK OD2 ASP A 194 CD CD A 986 1555 1555 2.23 LINK O PRO A 203 CD CD A 987 1555 1555 2.33 LINK OXT PRO A 203 CD CD A 987 1555 1555 2.40 LINK O HOH A 319 CD CD A 985 1555 1555 2.56 LINK O HOH A 320 CD CD A 985 1555 1555 2.56 LINK O HOH A 325 CD CD A 983 4454 1555 2.55 LINK O HOH A 348 CD CD A 982 1555 1555 2.41 LINK O HOH A 349 CD CD A 982 1555 1555 2.36 LINK O HOH A 354 CD CD A 988 1555 1555 2.36 LINK O HOH A 355 CD CD A 988 1555 1555 2.55 LINK O HOH A 356 CD CD A 988 1555 1555 2.36 LINK O HOH A 380 CD CD A 989 1555 1555 2.58 LINK O HOH A 386 CD CD A 989 1555 1555 2.33 LINK O HOH A 392 CD CD A 987 3555 1555 2.85 LINK O HOH A 424 CD CD A 988 1555 1555 2.43 LINK O HOH A 431 CD CD A 983 1555 1555 2.32 LINK O HOH A 433 CD CD A 983 1555 1555 2.33 LINK O HOH A 438 CD CD A 985 1555 1555 2.43 LINK O HOH A 442 CD CD A 986 1555 1555 2.82 LINK O HOH A 455 CD CD A 991 1555 1555 2.49 LINK O HOH A 550 CD CD A 989 1555 1555 2.50 LINK O HOH A 551 CD CD A 989 1555 1555 1.88 LINK O HOH A 552 CD CD A 989 1555 1555 2.30 LINK O HOH A 571 CD CD A 986 1555 1555 2.22 LINK O HOH A 583 CD CD A 984 1555 1555 2.49 LINK O HOH A 598 CD CD A 987 3555 1555 2.95 LINK O HOH A 617 CD CD A 990 1555 1555 2.52 LINK O HOH A 617 CD CD A 990 8555 1555 2.52 LINK O HOH A 618 CD CD A 990 1555 1555 2.62 LINK O HOH A 618 CD CD A 990 8555 1555 2.71 LINK O HOH A 666 CD CD A 985 1555 1555 2.29 LINK O HOH A 721 CD CD A 984 1555 1555 2.30 LINK O HOH A 746 CD CD A 987 1555 1555 1.83 LINK O HOH A 747 CD CD A 987 1555 1555 2.09 LINK O HOH A 803 CD CD A 991 1555 1555 1.93 LINK O HOH A 803 CD CD A 991 8555 1555 2.19 LINK O HOH A 821 CD CD A 984 1555 1555 2.34 LINK O HOH A 836 CD CD A 989 1555 1555 2.05 LINK O HOH A 837 CD CD A 987 1555 1555 1.98 LINK O HOH A 885 CD CD A 989 1555 1555 3.13 LINK O HOH A 914 CD CD A 984 1555 1555 3.11 LINK CD CD A 981 O TRP B 253 1555 1555 2.46 LINK CD CD A 981 OXT TRP B 253 1555 1555 2.26 LINK CD CD A 981 O HOH B 413 1555 1555 2.42 SITE 1 AC1 5 HIS A 144 HIS A 148 HIS A 154 TRP B 253 SITE 2 AC1 5 HOH B 413 SITE 1 AC2 5 HIS A 36 ASP A 156 ASP A 158 HOH A 348 SITE 2 AC2 5 HOH A 349 SITE 1 AC3 5 ASP A 181 ASP A 185 HOH A 325 HOH A 431 SITE 2 AC3 5 HOH A 433 SITE 1 AC4 4 HIS A 18 HOH A 583 HOH A 721 HOH A 821 SITE 1 AC5 6 GLN A 7 ASN A 50 HOH A 319 HOH A 320 SITE 2 AC5 6 HOH A 438 HOH A 666 SITE 1 AC6 3 ASP A 194 HOH A 442 HOH A 571 SITE 1 AC7 6 PRO A 203 HOH A 392 HOH A 598 HOH A 746 SITE 2 AC7 6 HOH A 747 HOH A 837 SITE 1 AC8 5 HIS A 131 HOH A 354 HOH A 355 HOH A 356 SITE 2 AC8 5 HOH A 424 SITE 1 AC9 6 HOH A 380 HOH A 386 HOH A 550 HOH A 551 SITE 2 AC9 6 HOH A 552 HOH A 836 SITE 1 BC1 3 GLU A 85 HOH A 617 HOH A 618 SITE 1 BC2 4 GLU A 85 GLU A 121 HOH A 455 HOH A 803 CRYST1 61.151 61.151 131.193 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007622 0.00000