HEADER TRANSFERASE 15-FEB-02 1L1E TITLE CRYSTAL STRUCTURE OF MYCOLIC ACID CYCLOPROPANE SYNTHASE PCAA COMPLEXED TITLE 2 WITH S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOLIC ACID SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCAA CYCLOPROPANE SYNTHASE; COMPND 5 EC: 2.1.1.79; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PCAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE COFACTOR, ALPHA/BETA, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.HUANG,C.V.SMITH,M.S.GLICKMAN,W.R.JACOBS JR.,J.C.SACCHETTINI,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 14-FEB-24 1L1E 1 REMARK REVDAT 4 24-FEB-09 1L1E 1 VERSN REVDAT 3 01-FEB-05 1L1E 1 JRNL AUTHOR KEYWDS REMARK REVDAT 2 10-APR-02 1L1E 1 JRNL REVDAT 1 06-MAR-02 1L1E 0 JRNL AUTH C.-C.HUANG,C.V.SMITH,M.S.GLICKMAN,W.R.JACOBS JR., JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURES OF MYCOLIC ACID CYCLOPROPANE SYNTHASES JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 277 11559 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11756461 JRNL DOI 10.1074/JBC.M111698200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 450578.690 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 32625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3932 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 204 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.00000 REMARK 3 B22 (A**2) : 2.00000 REMARK 3 B33 (A**2) : -4.01000 REMARK 3 B12 (A**2) : 1.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.890 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 37.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : SAH.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : SAH.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ELECTRON DENSITY IN THE REGION OF A175 TO A180 WAS WEAK. THE REMARK 3 MAIN REMARK 3 CHAIN WAS BUILT IN; HOWEVER, THERE IS SOME DIFFICULTY IN FITTING REMARK 3 THE SIDE REMARK 3 CHAIN OF GLU176, LEADING TO A CLOSE CONTACT WITH LYS180. THE REMARK 3 ELECTRON REMARK 3 DENSITY CORRESPONDING TO RESIDUES B176-B187 WAS NOT PRESENT. THESE REMARK 3 RESIDUES WERE NOT BUILT INTO THE MODEL. REMARK 4 REMARK 4 1L1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-00; 10-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 14-BM-C; 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 0.9793, 0.9795, 0.9641 REMARK 200 MONOCHROMATOR : BEND CYLINDRICAL GE(111) REMARK 200 MONOCHROMATOR; SI(111) DOUBLE- REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) BEND CYLINDRICAL GE(111) REMARK 200 MONOCHROMATOR; BENT CYLINDRICAL REMARK 200 SI-MIRROR (RH COATING) SI(111) REMARK 200 DOUBLE-CRYSTAL MONOCHROMATO REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM ACETATE, N REMARK 280 -OCTANOYLSUCROSE, S-ADENOSYL-L-HOMOCYSTEINE, PH 4.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 297.34667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.67333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 223.01000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.33667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 371.68333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 HIS A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 HIS A 15 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 PRO B 7 REMARK 465 HIS B 8 REMARK 465 PHE B 9 REMARK 465 GLY B 10 REMARK 465 ASN B 11 REMARK 465 VAL B 12 REMARK 465 GLN B 13 REMARK 465 ALA B 14 REMARK 465 HIS B 15 REMARK 465 GLU B 176 REMARK 465 GLY B 177 REMARK 465 ARG B 178 REMARK 465 GLU B 179 REMARK 465 LYS B 180 REMARK 465 GLY B 181 REMARK 465 LEU B 182 REMARK 465 THR B 183 REMARK 465 LEU B 184 REMARK 465 THR B 185 REMARK 465 HIS B 186 REMARK 465 GLU B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLU A 176 CG LYS A 180 1.68 REMARK 500 CA GLU A 176 CB LYS A 180 1.71 REMARK 500 OE2 GLU A 176 CD LYS A 180 1.76 REMARK 500 OE1 GLU A 176 CE LYS A 180 1.85 REMARK 500 O GLU A 176 O GLU A 179 1.92 REMARK 500 OE2 GLU A 176 CG LYS A 180 2.04 REMARK 500 CD GLU A 176 CD LYS A 180 2.11 REMARK 500 CG GLU A 176 CG LYS A 180 2.15 REMARK 500 C GLU A 176 O GLU A 179 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 127 OE2 GLU A 179 1455 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 171 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 127 48.61 -147.26 REMARK 500 GLU A 179 -168.79 -178.70 REMARK 500 LYS A 180 88.71 71.81 REMARK 500 LEU A 182 12.05 -59.51 REMARK 500 THR A 185 -90.31 -150.84 REMARK 500 HIS A 186 -70.41 -105.44 REMARK 500 GLU A 187 44.58 -68.98 REMARK 500 LEU A 188 -67.51 -172.46 REMARK 500 TRP A 204 143.26 -174.95 REMARK 500 GLN A 254 -93.39 -123.41 REMARK 500 TYR B 33 57.48 -117.57 REMARK 500 ASP B 41 -21.10 57.61 REMARK 500 PRO B 64 153.97 -49.83 REMARK 500 PRO B 159 -152.00 -73.39 REMARK 500 ASP B 161 43.70 -95.84 REMARK 500 PHE B 174 -1.06 53.95 REMARK 500 VAL B 189 -28.61 76.60 REMARK 500 GLU B 198 -23.33 -145.47 REMARK 500 GLN B 254 -101.54 -114.99 REMARK 500 LEU B 266 -73.52 -52.10 REMARK 500 LEU B 272 -36.34 -150.17 REMARK 500 PHE B 273 36.55 -90.56 REMARK 500 TYR B 277 -29.81 78.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0470C RELATED DB: TARGETDB DBREF 1L1E A 1 287 UNP Q7D9R5 Q7D9R5_MYCTU 1 287 DBREF 1L1E B 1 287 UNP Q7D9R5 Q7D9R5_MYCTU 1 287 SEQRES 1 A 287 MET SER VAL GLN LEU THR PRO HIS PHE GLY ASN VAL GLN SEQRES 2 A 287 ALA HIS TYR ASP LEU SER ASP ASP PHE PHE ARG LEU PHE SEQRES 3 A 287 LEU ASP PRO THR GLN THR TYR SER CYS ALA TYR PHE GLU SEQRES 4 A 287 ARG ASP ASP MET THR LEU GLN GLU ALA GLN ILE ALA LYS SEQRES 5 A 287 ILE ASP LEU ALA LEU GLY LYS LEU ASN LEU GLU PRO GLY SEQRES 6 A 287 MET THR LEU LEU ASP ILE GLY CYS GLY TRP GLY ALA THR SEQRES 7 A 287 MET ARG ARG ALA ILE GLU LYS TYR ASP VAL ASN VAL VAL SEQRES 8 A 287 GLY LEU THR LEU SER GLU ASN GLN ALA GLY HIS VAL GLN SEQRES 9 A 287 LYS MET PHE ASP GLN MET ASP THR PRO ARG SER ARG ARG SEQRES 10 A 287 VAL LEU LEU GLU GLY TRP GLU LYS PHE ASP GLU PRO VAL SEQRES 11 A 287 ASP ARG ILE VAL SER ILE GLY ALA PHE GLU HIS PHE GLY SEQRES 12 A 287 HIS GLN ARG TYR HIS HIS PHE PHE GLU VAL THR HIS ARG SEQRES 13 A 287 THR LEU PRO ALA ASP GLY LYS MET LEU LEU HIS THR ILE SEQRES 14 A 287 VAL ARG PRO THR PHE LYS GLU GLY ARG GLU LYS GLY LEU SEQRES 15 A 287 THR LEU THR HIS GLU LEU VAL HIS PHE THR LYS PHE ILE SEQRES 16 A 287 LEU ALA GLU ILE PHE PRO GLY GLY TRP LEU PRO SER ILE SEQRES 17 A 287 PRO THR VAL HIS GLU TYR ALA GLU LYS VAL GLY PHE ARG SEQRES 18 A 287 VAL THR ALA VAL GLN SER LEU GLN LEU HIS TYR ALA ARG SEQRES 19 A 287 THR LEU ASP MET TRP ALA THR ALA LEU GLU ALA ASN LYS SEQRES 20 A 287 ASP GLN ALA ILE ALA ILE GLN SER GLN THR VAL TYR ASP SEQRES 21 A 287 ARG TYR MET LYS TYR LEU THR GLY CYS ALA LYS LEU PHE SEQRES 22 A 287 ARG GLN GLY TYR THR ASP VAL ASP GLN PHE THR LEU GLU SEQRES 23 A 287 LYS SEQRES 1 B 287 MET SER VAL GLN LEU THR PRO HIS PHE GLY ASN VAL GLN SEQRES 2 B 287 ALA HIS TYR ASP LEU SER ASP ASP PHE PHE ARG LEU PHE SEQRES 3 B 287 LEU ASP PRO THR GLN THR TYR SER CYS ALA TYR PHE GLU SEQRES 4 B 287 ARG ASP ASP MET THR LEU GLN GLU ALA GLN ILE ALA LYS SEQRES 5 B 287 ILE ASP LEU ALA LEU GLY LYS LEU ASN LEU GLU PRO GLY SEQRES 6 B 287 MET THR LEU LEU ASP ILE GLY CYS GLY TRP GLY ALA THR SEQRES 7 B 287 MET ARG ARG ALA ILE GLU LYS TYR ASP VAL ASN VAL VAL SEQRES 8 B 287 GLY LEU THR LEU SER GLU ASN GLN ALA GLY HIS VAL GLN SEQRES 9 B 287 LYS MET PHE ASP GLN MET ASP THR PRO ARG SER ARG ARG SEQRES 10 B 287 VAL LEU LEU GLU GLY TRP GLU LYS PHE ASP GLU PRO VAL SEQRES 11 B 287 ASP ARG ILE VAL SER ILE GLY ALA PHE GLU HIS PHE GLY SEQRES 12 B 287 HIS GLN ARG TYR HIS HIS PHE PHE GLU VAL THR HIS ARG SEQRES 13 B 287 THR LEU PRO ALA ASP GLY LYS MET LEU LEU HIS THR ILE SEQRES 14 B 287 VAL ARG PRO THR PHE LYS GLU GLY ARG GLU LYS GLY LEU SEQRES 15 B 287 THR LEU THR HIS GLU LEU VAL HIS PHE THR LYS PHE ILE SEQRES 16 B 287 LEU ALA GLU ILE PHE PRO GLY GLY TRP LEU PRO SER ILE SEQRES 17 B 287 PRO THR VAL HIS GLU TYR ALA GLU LYS VAL GLY PHE ARG SEQRES 18 B 287 VAL THR ALA VAL GLN SER LEU GLN LEU HIS TYR ALA ARG SEQRES 19 B 287 THR LEU ASP MET TRP ALA THR ALA LEU GLU ALA ASN LYS SEQRES 20 B 287 ASP GLN ALA ILE ALA ILE GLN SER GLN THR VAL TYR ASP SEQRES 21 B 287 ARG TYR MET LYS TYR LEU THR GLY CYS ALA LYS LEU PHE SEQRES 22 B 287 ARG GLN GLY TYR THR ASP VAL ASP GLN PHE THR LEU GLU SEQRES 23 B 287 LYS HET CO3 A 903 4 HET SAH A 900 26 HET CO3 B 904 4 HET SAH B 901 26 HETNAM CO3 CARBONATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 CO3 2(C O3 2-) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *200(H2 O) HELIX 1 1 SER A 19 ARG A 24 1 6 HELIX 2 2 THR A 44 LYS A 59 1 16 HELIX 3 3 GLY A 76 ASP A 87 1 12 HELIX 4 4 SER A 96 MET A 110 1 15 HELIX 5 5 GLY A 122 PHE A 126 5 5 HELIX 6 6 ALA A 138 PHE A 142 5 5 HELIX 7 7 GLY A 143 GLN A 145 5 3 HELIX 8 8 ARG A 146 LEU A 158 1 13 HELIX 9 9 LEU A 188 ILE A 199 1 12 HELIX 10 10 SER A 207 LYS A 217 1 11 HELIX 11 11 LEU A 228 ASN A 246 1 19 HELIX 12 12 ASN A 246 GLN A 254 1 9 HELIX 13 13 SER A 255 GLN A 275 1 21 HELIX 14 14 SER B 19 ARG B 24 1 6 HELIX 15 15 THR B 44 LYS B 59 1 16 HELIX 16 16 GLY B 76 ASP B 87 1 12 HELIX 17 17 SER B 96 ASP B 108 1 13 HELIX 18 18 GLY B 122 PHE B 126 5 5 HELIX 19 19 ALA B 138 GLY B 143 1 6 HELIX 20 20 ARG B 146 HIS B 155 1 10 HELIX 21 21 PHE B 191 ILE B 199 1 9 HELIX 22 22 SER B 207 VAL B 218 1 12 HELIX 23 23 LEU B 228 ASN B 246 1 19 HELIX 24 24 ASN B 246 GLN B 254 1 9 HELIX 25 25 SER B 255 ALA B 270 1 16 HELIX 26 26 LYS B 271 PHE B 273 5 3 SHEET 1 A14 ARG A 116 LEU A 120 0 SHEET 2 A14 ASN A 89 THR A 94 1 N GLY A 92 O LEU A 119 SHEET 3 A14 THR A 67 ILE A 71 1 N ASP A 70 O VAL A 91 SHEET 4 A14 ARG A 132 ILE A 136 1 O VAL A 134 N LEU A 69 SHEET 5 A14 LYS A 163 VAL A 170 1 O HIS A 167 N SER A 135 SHEET 6 A14 ASP A 279 GLU A 286 -1 O PHE A 283 N LEU A 166 SHEET 7 A14 ARG A 221 SER A 227 -1 N ALA A 224 O THR A 284 SHEET 8 A14 ARG B 221 SER B 227 -1 O VAL B 225 N VAL A 225 SHEET 9 A14 ASP B 279 GLU B 286 -1 O GLU B 286 N ARG B 221 SHEET 10 A14 LYS B 163 VAL B 170 -1 N VAL B 170 O ASP B 279 SHEET 11 A14 ARG B 132 ILE B 136 1 N SER B 135 O HIS B 167 SHEET 12 A14 THR B 67 ILE B 71 1 N LEU B 69 O ARG B 132 SHEET 13 A14 ASN B 89 LEU B 93 1 O VAL B 91 N ASP B 70 SHEET 14 A14 ARG B 116 LEU B 119 1 O LEU B 119 N GLY B 92 SITE 1 AC1 7 SER A 34 CYS A 35 GLY A 137 GLU A 140 SITE 2 AC1 7 HIS A 167 ILE A 169 TYR A 232 SITE 1 AC2 7 SER B 34 CYS B 35 GLY B 137 GLU B 140 SITE 2 AC2 7 HIS B 167 THR B 168 ILE B 169 SITE 1 AC3 18 THR A 32 TYR A 33 SER A 34 GLY A 72 SITE 2 AC3 18 GLY A 74 THR A 94 LEU A 95 GLN A 99 SITE 3 AC3 18 GLY A 122 TRP A 123 GLU A 124 ILE A 136 SITE 4 AC3 18 GLY A 137 ALA A 138 ARG A 146 HOH A 907 SITE 5 AC3 18 HOH A 909 HOH A 973 SITE 1 AC4 19 THR B 32 TYR B 33 SER B 34 GLY B 72 SITE 2 AC4 19 GLY B 74 THR B 94 LEU B 95 GLN B 99 SITE 3 AC4 19 GLY B 122 TRP B 123 ILE B 136 GLY B 137 SITE 4 AC4 19 ALA B 138 PHE B 142 HOH B 905 HOH B 906 SITE 5 AC4 19 HOH B 908 HOH B 911 HOH B 919 CRYST1 45.340 45.340 446.020 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022056 0.012734 0.000000 0.00000 SCALE2 0.000000 0.025468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002242 0.00000