HEADER CHAPERONE 25-FEB-02 1L2W TITLE CRYSTAL STRUCTURE OF THE YERSINIA VIRULENCE EFFECTOR YOPE CHAPERONE- TITLE 2 BINDING DOMAIN IN COMPLEX WITH ITS SECRETION CHAPERONE, SYCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YOPE REGULATOR; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: YOPE CHAPERONE SYCE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OUTER MEMBRANE VIRULENCE PROTEIN YOPE; COMPND 8 CHAIN: I, J, K, L; COMPND 9 FRAGMENT: CHAPERONE-BINDING DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: SYCE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 12 ORGANISM_TAXID: 633; SOURCE 13 GENE: YOPE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CHAPERONE AND VIRULENCE PROTEIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.BIRTALAN,R.M.PHILLIPS,P.GHOSH REVDAT 3 16-AUG-23 1L2W 1 REMARK REVDAT 2 24-FEB-09 1L2W 1 VERSN REVDAT 1 12-JUN-02 1L2W 0 JRNL AUTH S.C.BIRTALAN,R.M.PHILLIPS,P.GHOSH JRNL TITL THREE-DIMENSIONAL SECRETION SIGNALS IN CHAPERONE-EFFECTOR JRNL TITL 2 COMPLEXES OF BACTERIAL PATHOGENS. JRNL REF MOL.CELL V. 9 971 2002 JRNL REFN ISSN 1097-2765 JRNL PMID 12049734 JRNL DOI 10.1016/S1097-2765(02)00529-4 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 84804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4252 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3497 REMARK 3 BIN FREE R VALUE : 0.3828 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 404 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 1.20400 REMARK 3 B33 (A**2) : -3.01300 REMARK 3 B12 (A**2) : 2.38700 REMARK 3 B13 (A**2) : 5.28900 REMARK 3 B23 (A**2) : -1.03600 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.74 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ATOMIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 18.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM TARTRATE, SODIUM REMARK 280 ACETATE, DITHIOTHREITOL, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H, J, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, K REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -48.44686 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 25.61924 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -65.29455 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 122 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 THR B 119 REMARK 465 SER B 120 REMARK 465 SER B 121 REMARK 465 LEU B 122 REMARK 465 MET C 0 REMARK 465 GLY C 1 REMARK 465 THR C 119 REMARK 465 SER C 120 REMARK 465 SER C 121 REMARK 465 LEU C 122 REMARK 465 SER D 121 REMARK 465 LEU D 122 REMARK 465 MET E 0 REMARK 465 GLY E 1 REMARK 465 THR E 119 REMARK 465 SER E 120 REMARK 465 SER E 121 REMARK 465 LEU E 122 REMARK 465 THR F 119 REMARK 465 SER F 120 REMARK 465 SER F 121 REMARK 465 LEU F 122 REMARK 465 THR G 119 REMARK 465 SER G 120 REMARK 465 SER G 121 REMARK 465 LEU G 122 REMARK 465 MET H 0 REMARK 465 GLY H 1 REMARK 465 THR H 119 REMARK 465 SER H 120 REMARK 465 SER H 121 REMARK 465 LEU H 122 REMARK 465 VAL I 17 REMARK 465 SER I 18 REMARK 465 GLY I 19 REMARK 465 SER I 20 REMARK 465 SER I 21 REMARK 465 SER I 79 REMARK 465 GLU I 80 REMARK 465 GLY I 81 REMARK 465 SER I 82 REMARK 465 HIS I 83 REMARK 465 LYS I 84 REMARK 465 PRO I 85 REMARK 465 VAL J 17 REMARK 465 SER J 18 REMARK 465 GLY J 19 REMARK 465 SER J 20 REMARK 465 SER J 21 REMARK 465 SER J 22 REMARK 465 SER J 79 REMARK 465 GLU J 80 REMARK 465 GLY J 81 REMARK 465 SER J 82 REMARK 465 HIS J 83 REMARK 465 LYS J 84 REMARK 465 PRO J 85 REMARK 465 VAL K 17 REMARK 465 SER K 18 REMARK 465 GLY K 19 REMARK 465 SER K 20 REMARK 465 SER K 21 REMARK 465 SER K 22 REMARK 465 VAL K 23 REMARK 465 SER K 79 REMARK 465 GLU K 80 REMARK 465 GLY K 81 REMARK 465 SER K 82 REMARK 465 HIS K 83 REMARK 465 LYS K 84 REMARK 465 PRO K 85 REMARK 465 VAL L 17 REMARK 465 SER L 18 REMARK 465 GLY L 19 REMARK 465 SER L 20 REMARK 465 SER L 21 REMARK 465 SER L 22 REMARK 465 VAL L 23 REMARK 465 SER L 79 REMARK 465 GLU L 80 REMARK 465 GLY L 81 REMARK 465 SER L 82 REMARK 465 HIS L 83 REMARK 465 LYS L 84 REMARK 465 PRO L 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 115.98 -163.06 REMARK 500 HIS B 41 117.50 -160.83 REMARK 500 PRO B 42 -168.98 -72.99 REMARK 500 LEU B 117 19.03 -67.53 REMARK 500 HIS D 41 115.82 -163.41 REMARK 500 HIS E 41 116.67 -160.83 REMARK 500 HIS F 41 115.75 -162.51 REMARK 500 LEU F 117 -7.65 -59.64 REMARK 500 HIS G 41 116.77 -165.24 REMARK 500 PRO H 42 -168.82 -73.99 REMARK 500 LEU H 117 29.03 -67.51 REMARK 500 SER I 54 -14.94 -160.30 REMARK 500 SER I 57 47.96 -99.70 REMARK 500 SER J 54 -14.60 -159.83 REMARK 500 SER J 57 46.58 -98.79 REMARK 500 SER K 54 -15.73 -159.02 REMARK 500 SER K 57 47.09 -100.91 REMARK 500 ALA K 67 170.26 -57.69 REMARK 500 SER L 27 61.62 60.85 REMARK 500 SER L 54 -14.02 -161.12 REMARK 500 SER L 57 46.15 -99.27 REMARK 500 ALA L 67 170.73 -58.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE SYCE PROTEIN, CHAINS A-H, MATCHES REMARK 999 SWISS PROT ENTRY P31491, WHOSE SOURCE IS YERSINIA PESTIS. REMARK 999 THE SOURCE OF THE SYCE PROTEIN IN THIS ENTRY IS YERSINIA REMARK 999 PSEUDOTUBERCULOSIS. THERE IS AN EXTRA GLYCINE, RESIDUE 1, REMARK 999 IN CHAINS A-H WHICH WAS INSERTED FOR CLONING PURPOSES, REMARK 999 AND THE LAST 8 RESIDUES WERE CLEAVED TO YIELD RESIDUES REMARK 999 0-122. THE N- AND C- TERMINAL RESIDUES OF CHAINS I-L REMARK 999 WERE CLEAVED TO YIELD RESIDUES 17-85. DBREF 1L2W I 17 85 UNP P08008 YOPE_YERPS 17 85 DBREF 1L2W J 17 85 UNP P08008 YOPE_YERPS 17 85 DBREF 1L2W K 17 85 UNP P08008 YOPE_YERPS 17 85 DBREF 1L2W L 17 85 UNP P08008 YOPE_YERPS 17 85 DBREF 1L2W A 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W B 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W C 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W D 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W E 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W F 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W G 0 122 PDB 1L2W 1L2W 0 122 DBREF 1L2W H 0 122 PDB 1L2W 1L2W 0 122 SEQRES 1 A 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 A 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 A 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 A 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 A 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 A 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 A 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 A 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 A 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 A 123 LEU GLN THR SER SER LEU SEQRES 1 B 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 B 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 B 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 B 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 B 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 B 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 B 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 B 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 B 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 B 123 LEU GLN THR SER SER LEU SEQRES 1 C 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 C 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 C 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 C 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 C 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 C 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 C 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 C 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 C 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 C 123 LEU GLN THR SER SER LEU SEQRES 1 D 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 D 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 D 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 D 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 D 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 D 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 D 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 D 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 D 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 D 123 LEU GLN THR SER SER LEU SEQRES 1 E 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 E 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 E 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 E 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 E 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 E 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 E 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 E 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 E 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 E 123 LEU GLN THR SER SER LEU SEQRES 1 F 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 F 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 F 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 F 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 F 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 F 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 F 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 F 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 F 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 F 123 LEU GLN THR SER SER LEU SEQRES 1 G 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 G 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 G 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 G 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 G 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 G 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 G 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 G 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 G 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 G 123 LEU GLN THR SER SER LEU SEQRES 1 H 123 MET GLY TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE SEQRES 2 H 123 GLN GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO SEQRES 3 H 123 VAL ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE SEQRES 4 H 123 THR GLU HIS PRO VAL GLY GLN ILE LEU MET PHE THR LEU SEQRES 5 H 123 PRO SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SEQRES 6 H 123 SER HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE SEQRES 7 H 123 LEU SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP SEQRES 8 H 123 ASN ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU SEQRES 9 H 123 TYR THR GLN LEU GLU MET LEU VAL GLN GLY ALA GLU ARG SEQRES 10 H 123 LEU GLN THR SER SER LEU SEQRES 1 I 69 VAL SER GLY SER SER SER VAL GLY GLU MET SER GLY ARG SEQRES 2 I 69 SER VAL SER GLN GLN THR SER ASP GLN TYR ALA ASN ASN SEQRES 3 I 69 LEU ALA GLY ARG THR GLU SER PRO GLN GLY SER SER LEU SEQRES 4 I 69 ALA SER ARG ILE ILE GLU ARG LEU SER SER VAL ALA HIS SEQRES 5 I 69 SER VAL ILE GLY PHE ILE GLN ARG MET PHE SER GLU GLY SEQRES 6 I 69 SER HIS LYS PRO SEQRES 1 J 69 VAL SER GLY SER SER SER VAL GLY GLU MET SER GLY ARG SEQRES 2 J 69 SER VAL SER GLN GLN THR SER ASP GLN TYR ALA ASN ASN SEQRES 3 J 69 LEU ALA GLY ARG THR GLU SER PRO GLN GLY SER SER LEU SEQRES 4 J 69 ALA SER ARG ILE ILE GLU ARG LEU SER SER VAL ALA HIS SEQRES 5 J 69 SER VAL ILE GLY PHE ILE GLN ARG MET PHE SER GLU GLY SEQRES 6 J 69 SER HIS LYS PRO SEQRES 1 K 69 VAL SER GLY SER SER SER VAL GLY GLU MET SER GLY ARG SEQRES 2 K 69 SER VAL SER GLN GLN THR SER ASP GLN TYR ALA ASN ASN SEQRES 3 K 69 LEU ALA GLY ARG THR GLU SER PRO GLN GLY SER SER LEU SEQRES 4 K 69 ALA SER ARG ILE ILE GLU ARG LEU SER SER VAL ALA HIS SEQRES 5 K 69 SER VAL ILE GLY PHE ILE GLN ARG MET PHE SER GLU GLY SEQRES 6 K 69 SER HIS LYS PRO SEQRES 1 L 69 VAL SER GLY SER SER SER VAL GLY GLU MET SER GLY ARG SEQRES 2 L 69 SER VAL SER GLN GLN THR SER ASP GLN TYR ALA ASN ASN SEQRES 3 L 69 LEU ALA GLY ARG THR GLU SER PRO GLN GLY SER SER LEU SEQRES 4 L 69 ALA SER ARG ILE ILE GLU ARG LEU SER SER VAL ALA HIS SEQRES 5 L 69 SER VAL ILE GLY PHE ILE GLN ARG MET PHE SER GLU GLY SEQRES 6 L 69 SER HIS LYS PRO FORMUL 13 HOH *362(H2 O) HELIX 1 1 GLY A 1 LEU A 15 1 15 HELIX 2 2 GLU A 59 HIS A 66 1 8 HELIX 3 3 LEU A 98 SER A 102 5 5 HELIX 4 4 LEU A 103 THR A 119 1 17 HELIX 5 5 SER B 3 LEU B 15 1 13 HELIX 6 6 GLU B 59 HIS B 66 1 8 HELIX 7 7 ASN B 96 LEU B 98 5 3 HELIX 8 8 ASN B 101 LEU B 117 1 17 HELIX 9 9 SER C 3 LEU C 15 1 13 HELIX 10 10 GLU C 59 HIS C 66 1 8 HELIX 11 11 ASN C 96 LEU C 98 5 3 HELIX 12 12 ASN C 101 LEU C 117 1 17 HELIX 13 13 GLY D 1 LEU D 15 1 15 HELIX 14 14 GLU D 59 HIS D 66 1 8 HELIX 15 15 LEU D 98 SER D 102 5 5 HELIX 16 16 LEU D 103 THR D 119 1 17 HELIX 17 17 SER E 3 LEU E 15 1 13 HELIX 18 18 GLU E 59 SER E 65 1 7 HELIX 19 19 HIS E 66 ILE E 68 5 3 HELIX 20 20 ASN E 96 LEU E 98 5 3 HELIX 21 21 ASN E 101 LEU E 117 1 17 HELIX 22 22 GLY F 1 LEU F 15 1 15 HELIX 23 23 GLU F 59 HIS F 66 1 8 HELIX 24 24 LEU F 98 SER F 102 5 5 HELIX 25 25 LEU F 103 LEU F 117 1 15 HELIX 26 26 GLY G 1 LEU G 15 1 15 HELIX 27 27 GLU G 59 HIS G 66 1 8 HELIX 28 28 LEU G 98 SER G 102 5 5 HELIX 29 29 LEU G 103 GLN G 118 1 16 HELIX 30 30 SER H 3 LEU H 15 1 13 HELIX 31 31 GLU H 59 SER H 65 1 7 HELIX 32 32 HIS H 66 ILE H 68 5 3 HELIX 33 33 ASN H 96 LEU H 98 5 3 HELIX 34 34 ASN H 101 LEU H 117 1 17 HELIX 35 35 ASP I 37 GLY I 45 1 9 HELIX 36 36 ALA I 67 PHE I 78 1 12 HELIX 37 37 ASP J 37 GLY J 45 1 9 HELIX 38 38 ALA J 67 PHE J 78 1 12 HELIX 39 39 ASP K 37 GLY K 45 1 9 HELIX 40 40 ALA K 67 PHE K 78 1 12 HELIX 41 41 ASP L 37 GLY L 45 1 9 HELIX 42 42 ALA L 67 PHE L 78 1 12 SHEET 1 A 7 ILE A 77 ASP A 81 0 SHEET 2 A 7 HIS A 86 PRO A 94 -1 O TRP A 90 N ILE A 77 SHEET 3 A 7 GLN A 45 THR A 50 -1 N ILE A 46 O GLN A 93 SHEET 4 A 7 PHE A 34 GLU A 40 -1 N THR A 39 O LEU A 47 SHEET 5 A 7 ILE A 27 VAL A 31 -1 N VAL A 31 O PHE A 34 SHEET 6 A 7 ARG I 29 GLN I 34 -1 O GLN I 34 N GLY A 28 SHEET 7 A 7 GLU I 25 MET I 26 -1 N MET I 26 O ARG I 29 SHEET 1 B 6 ILE B 77 ASP B 81 0 SHEET 2 B 6 HIS B 86 PRO B 94 -1 O HIS B 86 N ASP B 81 SHEET 3 B 6 GLN B 45 THR B 50 -1 N ILE B 46 O GLN B 93 SHEET 4 B 6 PHE B 34 GLU B 40 -1 N THR B 39 O LEU B 47 SHEET 5 B 6 VAL B 26 VAL B 31 -1 N VAL B 29 O CYS B 36 SHEET 6 B 6 ILE I 60 ARG I 62 -1 O GLU I 61 N LYS B 30 SHEET 1 C 6 ILE C 77 ASP C 81 0 SHEET 2 C 6 HIS C 86 PRO C 94 -1 O HIS C 86 N ASP C 81 SHEET 3 C 6 GLN C 45 THR C 50 -1 N ILE C 46 O GLN C 93 SHEET 4 C 6 PHE C 34 GLU C 40 -1 N THR C 39 O LEU C 47 SHEET 5 C 6 VAL C 26 VAL C 31 -1 N VAL C 29 O CYS C 36 SHEET 6 C 6 ILE J 60 ARG J 62 -1 O GLU J 61 N LYS C 30 SHEET 1 D 7 ILE D 77 ASP D 81 0 SHEET 2 D 7 HIS D 86 PRO D 94 -1 O TRP D 90 N ILE D 77 SHEET 3 D 7 GLN D 45 THR D 50 -1 N ILE D 46 O GLN D 93 SHEET 4 D 7 PHE D 34 GLU D 40 -1 N THR D 39 O LEU D 47 SHEET 5 D 7 VAL D 26 VAL D 31 -1 N VAL D 29 O CYS D 36 SHEET 6 D 7 ARG J 29 GLN J 34 -1 O SER J 32 N LYS D 30 SHEET 7 D 7 GLY J 24 MET J 26 -1 N GLY J 24 O VAL J 31 SHEET 1 E 6 ILE E 77 ASP E 81 0 SHEET 2 E 6 HIS E 86 PRO E 94 -1 O HIS E 86 N ASP E 81 SHEET 3 E 6 GLN E 45 THR E 50 -1 N ILE E 46 O GLN E 93 SHEET 4 E 6 PHE E 34 GLU E 40 -1 N THR E 39 O LEU E 47 SHEET 5 E 6 VAL E 26 VAL E 31 -1 N VAL E 29 O CYS E 36 SHEET 6 E 6 ILE K 60 ARG K 62 -1 O GLU K 61 N LYS E 30 SHEET 1 F 7 ILE F 77 ASP F 81 0 SHEET 2 F 7 HIS F 86 PRO F 94 -1 O VAL F 88 N SER F 79 SHEET 3 F 7 GLN F 45 THR F 50 -1 N ILE F 46 O GLN F 93 SHEET 4 F 7 PHE F 34 GLU F 40 -1 N THR F 39 O LEU F 47 SHEET 5 F 7 ILE F 27 VAL F 31 -1 N VAL F 29 O CYS F 36 SHEET 6 F 7 ARG K 29 GLN K 34 -1 O GLN K 34 N GLY F 28 SHEET 7 F 7 GLU K 25 MET K 26 -1 N MET K 26 O ARG K 29 SHEET 1 G 6 ILE G 77 ASP G 81 0 SHEET 2 G 6 HIS G 86 PRO G 94 -1 O TRP G 90 N ILE G 77 SHEET 3 G 6 GLN G 45 THR G 50 -1 N ILE G 46 O GLN G 93 SHEET 4 G 6 PHE G 34 GLU G 40 -1 N THR G 39 O LEU G 47 SHEET 5 G 6 ILE G 27 VAL G 31 -1 N VAL G 29 O CYS G 36 SHEET 6 G 6 VAL L 31 GLN L 34 -1 O SER L 32 N LYS G 30 SHEET 1 H 6 ILE H 77 ASP H 81 0 SHEET 2 H 6 HIS H 86 PRO H 94 -1 O HIS H 86 N ASP H 81 SHEET 3 H 6 GLN H 45 THR H 50 -1 N ILE H 46 O GLN H 93 SHEET 4 H 6 PHE H 34 GLU H 40 -1 N THR H 39 O LEU H 47 SHEET 5 H 6 VAL H 26 VAL H 31 -1 N VAL H 29 O CYS H 36 SHEET 6 H 6 ILE L 60 ARG L 62 -1 O GLU L 61 N LYS H 30 CISPEP 1 HIS A 41 PRO A 42 0 -1.24 CISPEP 2 HIS B 41 PRO B 42 0 -1.27 CISPEP 3 HIS C 41 PRO C 42 0 -1.09 CISPEP 4 HIS D 41 PRO D 42 0 -1.04 CISPEP 5 HIS E 41 PRO E 42 0 -0.80 CISPEP 6 HIS F 41 PRO F 42 0 -1.41 CISPEP 7 HIS G 41 PRO G 42 0 -1.58 CISPEP 8 HIS H 41 PRO H 42 0 -0.91 CRYST1 72.845 73.352 74.263 103.37 109.18 107.36 P 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013728 0.004292 0.006813 0.00000 SCALE2 0.000000 0.014284 0.005604 0.00000 SCALE3 0.000000 0.000000 0.015315 0.00000