HEADER ENDOCYTOSIS/EXOCYTOSIS 04-MAR-02 1L4A TITLE X-RAY STRUCTURE OF THE NEURONAL COMPLEXIN/SNARE COMPLEX FROM THE SQUID TITLE 2 LOLIGO PEALEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOBREVIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S-SYNTAXIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: S-SNAP25 FUSION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: S-SNAP25 FUSION PROTEIN; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: SYNAPHIN A; COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 3 ORGANISM_TAXID: 6621; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 PUBS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 11 ORGANISM_TAXID: 6621; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 PUBS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PMAL-TEV; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 19 ORGANISM_TAXID: 6621; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21 PUBS; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PRSET; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 27 ORGANISM_TAXID: 6621; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: BL21 PUBS; SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PRSET; SOURCE 33 MOL_ID: 5; SOURCE 34 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 35 ORGANISM_TAXID: 6621; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21 PUBS; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PMAL-TEV KEYWDS SNARE, SNARE COMPLEX, MEMBRANE FUSION, NEUROTRANSMISSION, KEYWDS 2 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BRACHER,J.KADLEC,H.BETZ,W.WEISSENHORN REVDAT 3 16-AUG-23 1L4A 1 SEQADV REVDAT 2 24-FEB-09 1L4A 1 VERSN REVDAT 1 31-JUL-02 1L4A 0 JRNL AUTH A.BRACHER,J.KADLEC,H.BETZ,W.WEISSENHORN JRNL TITL X-RAY STRUCTURE OF A NEURONAL COMPLEXIN-SNARE COMPLEX FROM JRNL TITL 2 SQUID. JRNL REF J.BIOL.CHEM. V. 277 26517 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12004067 JRNL DOI 10.1074/JBC.M203460200 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 10001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.297 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1484 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 100 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.79000 REMARK 3 B22 (A**2) : 42.41000 REMARK 3 B33 (A**2) : -38.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.60 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 49.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9150 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: PDB ENTRY 1SFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% MPD, 7.5% PEG550-MME, 20MM BETA REMARK 280 MERCAPTOETHANOL, 20MM TRIS PH 7.2, 50MM SODIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.03600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.55450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 121.55450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.03600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICALLY RELEVANT REMARK 300 STRUCTURE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 GLN A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 TRP A 99 REMARK 465 LYS A 100 REMARK 465 ASN A 101 REMARK 465 CYS A 102 REMARK 465 LYS A 103 REMARK 465 MET A 104 REMARK 465 TYR B 260 REMARK 465 GLN B 261 REMARK 465 SER B 262 REMARK 465 LYS B 263 REMARK 465 ALA B 264 REMARK 465 ARG B 265 REMARK 465 ASN C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 VAL C 7 REMARK 465 GLU C 8 REMARK 465 VAL C 9 REMARK 465 PRO C 10 REMARK 465 MET C 84 REMARK 465 GLU C 85 REMARK 465 LYS C 86 REMARK 465 VAL D 126 REMARK 465 THR D 127 REMARK 465 VAL D 128 REMARK 465 GLY D 129 REMARK 465 ASP D 130 REMARK 465 GLN D 131 REMARK 465 ASN D 132 REMARK 465 GLY D 133 REMARK 465 MET D 134 REMARK 465 GLY D 135 REMARK 465 LYS D 211 REMARK 465 ASN D 212 REMARK 465 GLY E 20 REMARK 465 LYS E 21 REMARK 465 SER E 22 REMARK 465 ALA E 23 REMARK 465 SER E 24 REMARK 465 GLY E 25 REMARK 465 GLU E 26 REMARK 465 LYS E 27 REMARK 465 GLU E 28 REMARK 465 GLY E 29 REMARK 465 ASN E 30 REMARK 465 GLU E 31 REMARK 465 ASN E 32 REMARK 465 ALA E 33 REMARK 465 GLU E 34 REMARK 465 GLU E 35 REMARK 465 GLU E 36 REMARK 465 ALA E 37 REMARK 465 ALA E 38 REMARK 465 ALA E 39 REMARK 465 ILE E 40 REMARK 465 GLU E 41 REMARK 465 GLU E 42 REMARK 465 ALA E 43 REMARK 465 ARG E 44 REMARK 465 ARG E 45 REMARK 465 GLU E 46 REMARK 465 ALA E 47 REMARK 465 GLU E 48 REMARK 465 LYS E 77 REMARK 465 LYS E 78 REMARK 465 VAL E 79 REMARK 465 LYS E 80 REMARK 465 GLU E 81 REMARK 465 GLU E 82 REMARK 465 PRO E 83 REMARK 465 GLU E 84 REMARK 465 ALA E 85 REMARK 465 GLU E 86 REMARK 465 ALA E 87 REMARK 465 ASP E 88 REMARK 465 LEU E 89 REMARK 465 ASP E 90 REMARK 465 GLU E 91 REMARK 465 GLY E 92 REMARK 465 ARG E 93 REMARK 465 VAL E 94 REMARK 465 GLY E 95 REMARK 465 ARG E 96 REMARK 465 LYS E 97 REMARK 465 LYS E 98 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 SER A 89 OG REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 PHE A 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 98 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 98 CZ3 CH2 REMARK 470 ILE B 184 CG1 CG2 CD1 REMARK 470 ILE B 185 CG1 CG2 CD1 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 GLN B 189 CG CD OE1 NE2 REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 ILE B 236 CG1 CG2 CD1 REMARK 470 TYR B 246 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 THR B 249 OG1 CG2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 VAL B 258 CG1 CG2 REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LEU C 14 CG CD1 CD2 REMARK 470 GLU C 15 CG CD OE1 OE2 REMARK 470 GLN C 23 CG CD OE1 NE2 REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 ILE C 70 CG1 CG2 CD1 REMARK 470 GLN C 72 CG CD OE1 NE2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 ASP C 76 CG OD1 OD2 REMARK 470 GLU C 78 CG CD OE1 OE2 REMARK 470 LEU C 81 CG CD1 CD2 REMARK 470 GLU C 82 CG CD OE1 OE2 REMARK 470 SER D 137 OG REMARK 470 ARG D 187 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 189 CG CD OE1 NE2 REMARK 470 ASN D 195 CG OD1 ND2 REMARK 470 GLU D 196 CG CD OE1 OE2 REMARK 470 ARG D 198 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 199 CG1 CG2 CD1 REMARK 470 LYS D 204 CG CD CE NZ REMARK 470 THR D 207 OG1 CG2 REMARK 470 LEU D 209 CG CD1 CD2 REMARK 470 LEU D 210 CG CD1 CD2 REMARK 470 GLU E 49 CG CD OE1 OE2 REMARK 470 ARG E 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 51 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 52 CG CD CE NZ REMARK 470 GLU E 53 CG CD OE1 OE2 REMARK 470 LYS E 54 CG CD CE NZ REMARK 470 HIS E 55 CG ND1 CD2 CE1 NE2 REMARK 470 ARG E 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 57 CG CD CE NZ REMARK 470 MET E 58 CG SD CE REMARK 470 GLU E 64 CG CD OE1 OE2 REMARK 470 GLN E 67 CG CD OE1 NE2 REMARK 470 ASP E 71 CG OD1 OD2 REMARK 470 LYS E 76 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 158.26 -22.01 REMARK 500 VAL A 35 -102.87 -33.99 REMARK 500 GLN A 36 130.24 166.97 REMARK 500 GLN A 37 58.01 -158.45 REMARK 500 LYS A 39 57.75 -160.50 REMARK 500 ILE A 69 19.70 -67.82 REMARK 500 ASP A 74 -76.62 -95.33 REMARK 500 SER A 84 11.60 -60.20 REMARK 500 ALA A 90 -38.77 -133.18 REMARK 500 LYS A 94 -73.26 -53.71 REMARK 500 ARG A 95 -35.64 -36.83 REMARK 500 LYS A 96 -99.64 -70.25 REMARK 500 PHE A 97 -81.26 -149.59 REMARK 500 SER B 180 -49.61 -175.43 REMARK 500 ALA B 181 -102.51 57.20 REMARK 500 GLU B 187 -7.41 -59.22 REMARK 500 GLN B 229 -4.52 -56.33 REMARK 500 ILE B 236 -6.67 -59.66 REMARK 500 GLU B 237 -70.25 -91.21 REMARK 500 GLU B 241 45.02 -86.42 REMARK 500 ALA B 242 -50.73 -177.08 REMARK 500 ILE B 247 17.35 -67.22 REMARK 500 ASP B 253 -13.66 -48.93 REMARK 500 LYS B 256 28.19 -64.79 REMARK 500 VAL B 258 -62.89 -100.32 REMARK 500 GLU C 13 -52.07 -120.91 REMARK 500 ILE C 47 -71.65 -68.21 REMARK 500 LEU C 60 -0.08 -54.90 REMARK 500 LEU C 67 23.18 -77.31 REMARK 500 MET C 74 -60.76 -154.37 REMARK 500 LYS C 75 0.34 -64.86 REMARK 500 ASN C 80 7.48 -63.87 REMARK 500 LEU C 81 22.44 -67.98 REMARK 500 GLU C 82 -74.19 -76.81 REMARK 500 ARG D 143 105.26 -58.49 REMARK 500 ILE D 144 -60.79 -94.91 REMARK 500 ASN D 146 62.20 -63.66 REMARK 500 ASP D 173 -84.07 -53.36 REMARK 500 ASN D 182 -77.16 -65.08 REMARK 500 GLN D 189 -70.88 -63.47 REMARK 500 ALA D 192 0.74 -69.29 REMARK 500 SER D 197 15.69 -68.82 REMARK 500 ARG D 198 -65.93 -124.77 REMARK 500 ILE D 199 -5.57 -56.84 REMARK 500 ASP D 200 -60.05 -123.04 REMARK 500 LYS D 208 -71.66 -70.41 REMARK 500 LEU D 209 -73.76 -42.33 REMARK 500 THR E 68 -39.41 -38.83 REMARK 500 LEU E 75 -141.57 -115.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SFC RELATED DB: PDB REMARK 900 NEURONAL SYNAPTIC FUSION COMPLEX REMARK 900 RELATED ID: 1KIL RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF THE COMPLEXIN/SNARE COMPLEX DBREF 1L4A A 25 104 UNP P47194 SYB_LOLPE 25 104 DBREF 1L4A B 178 265 UNP O46345 O46345_LOLPE 183 265 DBREF 1L4A C 4 86 UNP Q8T3S4 Q8T3S4_LOLPE 4 86 DBREF 1L4A D 126 212 UNP Q8T3S4 Q8T3S4_LOLPE 126 212 DBREF 1L4A E 20 98 UNP Q95PA1 Q95PA1_LOLPE 25 98 SEQADV 1L4A GLY B 178 UNP O46345 CLONING ARTIFACT SEQADV 1L4A LYS B 179 UNP O46345 CLONING ARTIFACT SEQADV 1L4A SER B 180 UNP O46345 CLONING ARTIFACT SEQADV 1L4A ALA B 181 UNP O46345 CLONING ARTIFACT SEQADV 1L4A SER B 182 UNP O46345 CLONING ARTIFACT SEQADV 1L4A GLY E 20 UNP Q95PA1 CLONING ARTIFACT SEQADV 1L4A LYS E 21 UNP Q95PA1 CLONING ARTIFACT SEQADV 1L4A SER E 22 UNP Q95PA1 CLONING ARTIFACT SEQADV 1L4A ALA E 23 UNP Q95PA1 CLONING ARTIFACT SEQADV 1L4A SER E 24 UNP Q95PA1 CLONING ARTIFACT SEQRES 1 A 80 PRO GLY PRO PRO GLN GLY PRO PRO GLN PRO VAL GLN GLN SEQRES 2 A 80 SER LYS ARG LEU GLN GLN THR GLN ALA GLN VAL GLU GLU SEQRES 3 A 80 VAL VAL ASP ILE MET ARG VAL ASN VAL ASP LYS VAL LEU SEQRES 4 A 80 GLU ARG ASP SER LYS ILE SER GLU LEU ASP ASP ARG ALA SEQRES 5 A 80 ASP ALA LEU GLN ALA GLY ALA SER GLN PHE GLU ALA SER SEQRES 6 A 80 ALA GLY LYS LEU LYS ARG LYS PHE TRP TRP LYS ASN CYS SEQRES 7 A 80 LYS MET SEQRES 1 B 88 GLY LYS SER ALA SER GLY ILE ILE MET GLU THR GLN GLN SEQRES 2 B 88 ALA LYS GLN THR LEU ALA ASP ILE GLU ALA ARG HIS ALA SEQRES 3 B 88 ASP ILE MET LYS LEU GLU THR SER ILE ARG GLU LEU HIS SEQRES 4 B 88 ASP MET PHE MET ASP MET ALA MET LEU VAL GLU SER GLN SEQRES 5 B 88 GLY GLU MET ILE ASP ARG ILE GLU TYR ASN VAL GLU ALA SEQRES 6 B 88 ALA VAL ASP TYR ILE GLU THR ALA LYS VAL ASP THR LYS SEQRES 7 B 88 LYS ALA VAL LYS TYR GLN SER LYS ALA ARG SEQRES 1 C 83 ASN GLY GLU VAL GLU VAL PRO LYS THR GLU LEU GLU GLU SEQRES 2 C 83 ILE GLN GLN GLN CYS ASN GLN VAL THR ASP ASP SER LEU SEQRES 3 C 83 GLU SER THR ARG ARG MET LEU ASN MET CYS GLU GLU SER SEQRES 4 C 83 LYS GLU ALA GLY ILE ARG THR LEU VAL MET LEU ASP GLU SEQRES 5 C 83 GLN GLY GLU GLN LEU ASP ARG ILE GLU GLU GLY LEU ASP SEQRES 6 C 83 GLN ILE ASN GLN ASP MET LYS ASP ALA GLU LYS ASN LEU SEQRES 7 C 83 GLU GLY MET GLU LYS SEQRES 1 D 87 VAL THR VAL GLY ASP GLN ASN GLY MET GLY PRO SER SER SEQRES 2 D 87 GLY TYR VAL THR ARG ILE THR ASN ASP ALA ARG GLU ASP SEQRES 3 D 87 ASP MET GLU ASN ASN MET LYS GLU VAL SER SER MET ILE SEQRES 4 D 87 GLY ASN LEU ARG ASN MET ALA ILE ASP MET GLY ASN GLU SEQRES 5 D 87 ILE GLY SER GLN ASN ARG GLN VAL ASP ARG ILE GLN GLN SEQRES 6 D 87 LYS ALA GLU SER ASN GLU SER ARG ILE ASP GLU ALA ASN SEQRES 7 D 87 LYS LYS ALA THR LYS LEU LEU LYS ASN SEQRES 1 E 79 GLY LYS SER ALA SER GLY GLU LYS GLU GLY ASN GLU ASN SEQRES 2 E 79 ALA GLU GLU GLU ALA ALA ALA ILE GLU GLU ALA ARG ARG SEQRES 3 E 79 GLU ALA GLU GLU ARG ARG LYS GLU LYS HIS ARG LYS MET SEQRES 4 E 79 GLU GLU GLU ARG GLU GLU MET ARG GLN THR ILE ARG ASP SEQRES 5 E 79 LYS TYR GLY LEU LYS LYS LYS VAL LYS GLU GLU PRO GLU SEQRES 6 E 79 ALA GLU ALA ASP LEU ASP GLU GLY ARG VAL GLY ARG LYS SEQRES 7 E 79 LYS FORMUL 6 HOH *23(H2 O) HELIX 1 1 LYS A 39 ALA A 78 1 40 HELIX 2 2 GLU A 87 PHE A 97 1 11 HELIX 3 3 SER B 182 VAL B 226 1 45 HELIX 4 4 GLU B 227 ASN B 239 1 13 HELIX 5 5 ASN B 239 ALA B 250 1 12 HELIX 6 6 LYS B 251 LYS B 256 5 6 HELIX 7 7 GLU C 13 ASP C 76 1 64 HELIX 8 8 ALA C 77 ASN C 80 5 4 HELIX 9 9 ASP D 147 SER D 162 1 16 HELIX 10 10 MET D 163 ASN D 195 1 33 HELIX 11 11 ASN D 195 ASP D 200 1 6 HELIX 12 12 ASP D 200 LEU D 209 1 10 HELIX 13 13 GLU E 49 GLY E 74 1 26 CRYST1 26.072 75.430 243.109 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004113 0.00000