HEADER DNA 05-MAR-02 1L4J TITLE HOLLIDAY JUNCTION TCGGTACCGA WITH NA AND CA BINDING SITES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SECTION OF HOLLIDAY JUNCTION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS HOLLIDAY JUNCTION, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.H.THORPE,B.C.GALE,S.C.M.TEIXEIRA,C.J.CARDIN REVDAT 5 14-FEB-24 1L4J 1 REMARK LINK REVDAT 4 24-JUL-19 1L4J 1 REMARK REVDAT 3 11-OCT-17 1L4J 1 REMARK REVDAT 2 24-FEB-09 1L4J 1 VERSN REVDAT 1 04-MAR-03 1L4J 0 JRNL AUTH J.H.THORPE,B.C.GALE,S.C.M.TEIXEIRA,C.J.CARDIN JRNL TITL CONFORMATIONAL AND HYDRATION EFFECTS OF SITE-SELECTIVE JRNL TITL 2 SODIUM, CALCIUM AND STRONTIUM ION BINDING TO THE DNA JRNL TITL 3 HOLLIDAY JUNCTION STRUCTURE D(TCGGTACCGA)4 JRNL REF J.MOL.BIOL. V. 327 97 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12614611 JRNL DOI 10.1016/S0022-2836(03)00088-3 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 8780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 808 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 900 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1372 ; 2.641 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 936 ; 1.320 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 120 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 412 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 275 ; 0.348 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 458 ; 0.220 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.180 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.037 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.133 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 14 ; 0.211 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.230 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 900 ; 2.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 2.520 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1L4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.073 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.19900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, CALCIUM CHLORIDE, REMARK 280 MPD, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.03350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 11.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.03350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 11.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS COMPOSED OF 4 STRANDS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 O3' DT A 1 C3' -0.050 REMARK 500 DT A 1 O3' DC A 2 P 0.084 REMARK 500 DC A 8 O3' DC A 8 C3' -0.039 REMARK 500 DG A 9 O3' DG A 9 C3' -0.047 REMARK 500 DA D 36 O3' DA D 36 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 N3 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC A 2 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC A 2 C2 - N3 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG A 4 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT A 5 O5' - P - OP1 ANGL. DEV. = -9.2 DEGREES REMARK 500 DT A 5 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA A 6 O3' - P - OP2 ANGL. DEV. = 10.9 DEGREES REMARK 500 DA A 6 O5' - P - OP1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA A 6 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC A 7 N1 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = -7.4 DEGREES REMARK 500 DG A 9 C5' - C4' - O4' ANGL. DEV. = 6.6 DEGREES REMARK 500 DG A 9 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC B 12 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DG B 13 O5' - P - OP1 ANGL. DEV. = 8.5 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT B 15 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = -7.9 DEGREES REMARK 500 DG B 19 OP1 - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 DG B 19 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 21 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 24 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 24 N1 - C6 - O6 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG C 24 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT C 25 OP1 - P - OP2 ANGL. DEV. = 11.6 DEGREES REMARK 500 DT C 25 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC C 27 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DC C 28 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 29 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT D 31 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 31 C4 - C5 - C7 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 31 C6 - C5 - C7 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 32 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG D 34 O4' - C1' - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 DT D 35 O4' - C1' - N1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC D 38 O4' - C1' - N1 ANGL. DEV. = -7.4 DEGREES REMARK 500 DG D 39 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA D 40 OP1 - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 540 O 138.8 REMARK 620 3 HOH A 541 O 74.9 71.8 REMARK 620 4 HOH A 542 O 141.0 73.7 143.8 REMARK 620 5 HOH A 543 O 77.9 87.5 104.4 84.5 REMARK 620 6 HOH D 502 O 74.2 146.5 137.5 73.7 96.8 REMARK 620 7 HOH D 544 O 109.2 89.2 81.5 87.6 172.0 82.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 577 O REMARK 620 2 HOH A 588 O 81.1 REMARK 620 3 HOH B 512 O 74.8 134.4 REMARK 620 4 HOH B 589 O 162.7 106.6 89.2 REMARK 620 5 HOH B 590 O 81.2 68.8 69.7 87.1 REMARK 620 6 HOH B 591 O 121.8 76.9 148.5 75.4 134.9 REMARK 620 7 HOH B 592 O 78.4 138.5 73.0 103.6 141.0 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 627 O REMARK 620 2 HOH B 659 O 63.7 REMARK 620 3 HOH D 628 O 113.3 72.8 REMARK 620 4 HOH D 651 O 95.5 132.6 78.8 REMARK 620 5 HOH D 660 O 159.5 131.6 86.3 82.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 538 O REMARK 620 2 HOH C 531 O 139.5 REMARK 620 3 HOH C 582 O 144.5 70.4 REMARK 620 4 HOH C 583 O 69.3 85.7 144.5 REMARK 620 5 HOH C 584 O 96.1 108.6 86.8 76.2 REMARK 620 6 HOH C 587 O 87.8 72.7 85.3 112.8 171.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 570 O REMARK 620 2 HOH C 571 O 79.4 REMARK 620 3 HOH D 515 O 101.2 78.0 REMARK 620 4 HOH D 572 O 106.3 75.4 137.0 REMARK 620 5 HOH D 581 O 91.9 144.0 138.0 73.7 REMARK 620 6 HOH D 585 O 173.0 94.4 80.5 68.7 91.3 REMARK 620 7 HOH D 586 O 78.3 135.8 69.7 147.8 74.3 108.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 610 O REMARK 620 2 HOH C 612 O 85.4 REMARK 620 3 HOH D 611 O 168.1 85.2 REMARK 620 4 HOH D 613 O 106.7 132.3 84.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 106 DBREF 1L4J A 1 10 PDB 1L4J 1L4J 1 10 DBREF 1L4J B 11 20 PDB 1L4J 1L4J 11 20 DBREF 1L4J C 21 30 PDB 1L4J 1L4J 21 30 DBREF 1L4J D 31 40 PDB 1L4J 1L4J 31 40 SEQRES 1 A 10 DT DC DG DG DT DA DC DC DG DA SEQRES 1 B 10 DT DC DG DG DT DA DC DC DG DA SEQRES 1 C 10 DT DC DG DG DT DA DC DC DG DA SEQRES 1 D 10 DT DC DG DG DT DA DC DC DG DA HET CA A 101 1 HET CA B 102 1 HET CA C 104 1 HET CA D 103 1 HET NA D 105 1 HET NA D 106 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 5 CA 4(CA 2+) FORMUL 9 NA 2(NA 1+) FORMUL 11 HOH *168(H2 O) LINK CA CA A 101 O HOH A 503 1555 1555 2.65 LINK CA CA A 101 O HOH A 540 1555 1555 2.39 LINK CA CA A 101 O HOH A 541 1555 1555 2.54 LINK CA CA A 101 O HOH A 542 1555 1555 2.30 LINK CA CA A 101 O HOH A 543 1555 1555 2.09 LINK CA CA A 101 O HOH D 502 1555 1555 2.46 LINK CA CA A 101 O HOH D 544 1555 1555 2.42 LINK O HOH A 577 CA CA B 102 1555 1555 2.66 LINK O HOH A 588 CA CA B 102 1555 1555 2.61 LINK O HOH A 627 NA NA D 106 1555 1555 2.55 LINK CA CA B 102 O HOH B 512 1555 1555 2.46 LINK CA CA B 102 O HOH B 589 1555 1555 2.40 LINK CA CA B 102 O HOH B 590 1555 1555 2.48 LINK CA CA B 102 O HOH B 591 1555 1555 2.36 LINK CA CA B 102 O HOH B 592 1555 1555 2.17 LINK O HOH B 538 CA CA C 104 1555 1555 2.35 LINK O HOH B 659 NA NA D 106 1555 1555 2.31 LINK CA CA C 104 O HOH C 531 1555 1555 2.40 LINK CA CA C 104 O HOH C 582 1555 1555 2.40 LINK CA CA C 104 O HOH C 583 1555 1555 2.38 LINK CA CA C 104 O HOH C 584 1555 1555 2.21 LINK CA CA C 104 O HOH C 587 1555 1555 2.43 LINK O HOH C 570 CA CA D 103 1555 1555 2.31 LINK O HOH C 571 CA CA D 103 1555 1555 2.44 LINK O HOH C 610 NA NA D 105 1555 1555 2.14 LINK O HOH C 612 NA NA D 105 1555 1555 2.56 LINK CA CA D 103 O HOH D 515 1555 1555 2.59 LINK CA CA D 103 O HOH D 572 1555 1555 2.24 LINK CA CA D 103 O HOH D 581 1555 1555 2.35 LINK CA CA D 103 O HOH D 585 1555 1555 2.25 LINK CA CA D 103 O HOH D 586 1555 1555 2.51 LINK NA NA D 105 O HOH D 611 1555 1555 2.19 LINK NA NA D 105 O HOH D 613 1555 1555 2.55 LINK NA NA D 106 O HOH D 628 1555 1555 2.72 LINK NA NA D 106 O HOH D 651 1555 1555 2.42 LINK NA NA D 106 O HOH D 660 1555 1555 2.51 SITE 1 AC1 7 HOH A 503 HOH A 540 HOH A 541 HOH A 542 SITE 2 AC1 7 HOH A 543 HOH D 502 HOH D 544 SITE 1 AC2 7 HOH A 577 HOH A 588 HOH B 512 HOH B 589 SITE 2 AC2 7 HOH B 590 HOH B 591 HOH B 592 SITE 1 AC3 7 HOH C 570 HOH C 571 HOH D 515 HOH D 572 SITE 2 AC3 7 HOH D 581 HOH D 585 HOH D 586 SITE 1 AC4 6 HOH B 538 HOH C 531 HOH C 582 HOH C 583 SITE 2 AC4 6 HOH C 584 HOH C 587 SITE 1 AC5 5 HOH C 610 HOH C 612 HOH D 611 HOH D 613 SITE 2 AC5 5 HOH D 614 SITE 1 AC6 5 HOH A 627 HOH B 659 HOH D 628 HOH D 651 SITE 2 AC6 5 HOH D 660 CRYST1 66.067 23.775 73.816 90.00 110.58 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015136 0.000000 0.005682 0.00000 SCALE2 0.000000 0.042061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014470 0.00000