HEADER LIGASE 14-MAR-02 1L7B TITLE SOLUTION NMR STRUCTURE OF BRCT DOMAIN OF T. THERMOPHILUS: NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET WR64TT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: DNLJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BRCT, DNA LIGASE, AUTOSTRUCTURE, STRUCTURAL GENOMICS, NESG, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, LIGASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.SAHOTA,B.L.DIXON,Y.P.HUANG,J.ARAMINI,D.MONLEON,D.BHATTACHARYA, AUTHOR 2 G.V.T.SWAPNA,C.YIN,R.XIAO,S.ANDERSON,R.TEJERO,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 22-MAY-24 1L7B 1 REMARK REVDAT 4 23-FEB-22 1L7B 1 REMARK REVDAT 3 24-FEB-09 1L7B 1 VERSN REVDAT 2 25-JAN-05 1L7B 1 AUTHOR KEYWDS REMARK REVDAT 1 16-SEP-03 1L7B 0 JRNL AUTH G.SAHOTA,B.L.DIXON,Y.P.HUANG,J.ARAMINI,A.BHATTACHARYA, JRNL AUTH 2 D.MONLEON,G.V.T.SWAPNA,C.YIN,R.XIAO,S.ANDERSON, JRNL AUTH 3 G.T.MONTELIONE,R.TEJERO JRNL TITL SOLUTION NMR STRUCTURE OF THE BRCT DOMAIN FROM THERMUS JRNL TITL 2 THERMOPHILUS DNA LIGASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, DYANA 1.5 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, WUTHRICH, ET AL. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR-NIH VERSION 1.1.2 (G.M. CLORE,J. REMARK 3 KUSZEWSKY,C. SCHWIETERS,N. TJANDRA) WAS ALSO USED FOR REFINEMENT REMARK 4 REMARK 4 1L7B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015705. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 300MM NH4OAC REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM U-15N,13C; 300MM NH4OAC; REMARK 210 95% H20, 10% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D PFG-[15N]HSQC; 3D PFG- 3D PFG REMARK 210 -(HA)CA(CO)NH; 3D PFG-HA(CA)(CO) REMARK 210 NH; 3D PFG-HA(CA)NH; 3D PFG- REMARK 210 CBCANH; 3D PFG-CBCA(CO)NH; 3D REMARK 210 PFG-(HA)CANH; 3D PFG-H 3D PFG- REMARK 210 HBHA(CB)(CA)(CO)NH; 3D PFG- REMARK 210 HCC(CO)NH-TOCSY; 3D PFG-13C- REMARK 210 EDITED NOESY; 3D PFG-15N-EDITED REMARK 210 NOESY; 2D HSQC-J; N-H IPAP REMARK 210 RESIDUAL DIPOLAR COUPLING REMARK 210 MEASUREMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, NMRPIPE 97.231.15.18, REMARK 210 AUTOASSIGN 1.7.6, AUTOSTRUCTURE REMARK 210 1.0 BETA, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : SET OF ALL STRUCTURES WITHIN 5RT REMARK 210 OF LOWEST ENERGY STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 57 H ALA A 61 1.46 REMARK 500 O THR A 45 HG SER A 46 1.55 REMARK 500 O LEU A 78 H THR A 82 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 6 26.22 -151.15 REMARK 500 1 ALA A 7 -85.44 -42.09 REMARK 500 1 GLU A 18 -0.95 -146.55 REMARK 500 1 LEU A 19 -14.77 67.53 REMARK 500 1 SER A 20 33.30 88.82 REMARK 500 1 PRO A 22 94.53 -65.13 REMARK 500 1 ASP A 39 28.52 -156.79 REMARK 500 1 SER A 42 -32.16 -139.36 REMARK 500 1 ARG A 43 -63.61 165.35 REMARK 500 1 THR A 45 -108.83 -81.74 REMARK 500 1 GLU A 52 -172.36 -65.99 REMARK 500 1 ALA A 63 116.42 41.74 REMARK 500 1 LEU A 64 31.66 -86.70 REMARK 500 1 ARG A 76 -76.29 -70.03 REMARK 500 1 LEU A 89 -125.50 -161.04 REMARK 500 1 VAL A 90 -82.00 63.77 REMARK 500 2 GLU A 6 -65.78 -175.32 REMARK 500 2 ALA A 7 -90.97 79.98 REMARK 500 2 LYS A 9 172.60 -47.04 REMARK 500 2 THR A 16 1.00 -56.56 REMARK 500 2 GLU A 18 28.47 176.84 REMARK 500 2 SER A 20 34.74 89.52 REMARK 500 2 PRO A 22 36.76 -70.95 REMARK 500 2 ARG A 23 -14.81 -43.07 REMARK 500 2 ASP A 39 -0.69 -146.63 REMARK 500 2 SER A 42 -31.65 -152.40 REMARK 500 2 ARG A 43 -70.99 -178.20 REMARK 500 2 SER A 46 65.10 -151.65 REMARK 500 2 VAL A 50 93.65 -64.22 REMARK 500 2 GLU A 52 -164.48 -67.51 REMARK 500 2 ALA A 63 149.83 63.14 REMARK 500 2 ARG A 76 -72.10 -67.65 REMARK 500 2 LEU A 78 -75.09 -58.79 REMARK 500 2 LYS A 85 99.85 -69.97 REMARK 500 2 GLU A 88 11.34 58.63 REMARK 500 3 GLU A 6 33.82 -141.27 REMARK 500 3 ALA A 7 -43.64 79.13 REMARK 500 3 LYS A 9 175.18 -46.18 REMARK 500 3 THR A 16 80.46 -68.81 REMARK 500 3 SER A 20 21.04 87.44 REMARK 500 3 PRO A 22 36.01 -69.24 REMARK 500 3 ARG A 23 -15.46 -45.77 REMARK 500 3 LEU A 33 8.23 -69.88 REMARK 500 3 THR A 38 -168.93 -164.25 REMARK 500 3 SER A 42 -55.04 -139.00 REMARK 500 3 ARG A 43 22.02 -175.75 REMARK 500 3 LYS A 44 24.50 -169.30 REMARK 500 3 THR A 45 35.18 -151.57 REMARK 500 3 GLU A 52 -134.75 -114.12 REMARK 500 3 ASN A 53 -64.02 -122.49 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.28 SIDE CHAIN REMARK 500 1 ARG A 23 0.16 SIDE CHAIN REMARK 500 1 ARG A 31 0.22 SIDE CHAIN REMARK 500 1 ARG A 32 0.31 SIDE CHAIN REMARK 500 1 ARG A 43 0.29 SIDE CHAIN REMARK 500 1 ARG A 62 0.26 SIDE CHAIN REMARK 500 1 ARG A 76 0.32 SIDE CHAIN REMARK 500 1 ARG A 81 0.29 SIDE CHAIN REMARK 500 2 ARG A 21 0.30 SIDE CHAIN REMARK 500 2 ARG A 23 0.27 SIDE CHAIN REMARK 500 2 ARG A 31 0.23 SIDE CHAIN REMARK 500 2 ARG A 32 0.26 SIDE CHAIN REMARK 500 2 ARG A 43 0.32 SIDE CHAIN REMARK 500 2 ARG A 62 0.27 SIDE CHAIN REMARK 500 2 ARG A 76 0.32 SIDE CHAIN REMARK 500 2 ARG A 81 0.32 SIDE CHAIN REMARK 500 3 ARG A 21 0.32 SIDE CHAIN REMARK 500 3 ARG A 31 0.31 SIDE CHAIN REMARK 500 3 ARG A 32 0.27 SIDE CHAIN REMARK 500 3 ARG A 43 0.31 SIDE CHAIN REMARK 500 3 ARG A 62 0.26 SIDE CHAIN REMARK 500 3 ARG A 76 0.29 SIDE CHAIN REMARK 500 3 ARG A 81 0.31 SIDE CHAIN REMARK 500 4 ARG A 21 0.10 SIDE CHAIN REMARK 500 4 ARG A 23 0.32 SIDE CHAIN REMARK 500 4 ARG A 31 0.28 SIDE CHAIN REMARK 500 4 ARG A 32 0.30 SIDE CHAIN REMARK 500 4 ARG A 43 0.25 SIDE CHAIN REMARK 500 4 ARG A 62 0.30 SIDE CHAIN REMARK 500 4 ARG A 76 0.20 SIDE CHAIN REMARK 500 4 ARG A 81 0.17 SIDE CHAIN REMARK 500 5 ARG A 21 0.18 SIDE CHAIN REMARK 500 5 ARG A 23 0.32 SIDE CHAIN REMARK 500 5 ARG A 31 0.30 SIDE CHAIN REMARK 500 5 ARG A 32 0.31 SIDE CHAIN REMARK 500 5 ARG A 43 0.29 SIDE CHAIN REMARK 500 5 ARG A 62 0.23 SIDE CHAIN REMARK 500 5 ARG A 76 0.27 SIDE CHAIN REMARK 500 5 ARG A 81 0.32 SIDE CHAIN REMARK 500 6 ARG A 21 0.27 SIDE CHAIN REMARK 500 6 ARG A 23 0.31 SIDE CHAIN REMARK 500 6 ARG A 31 0.31 SIDE CHAIN REMARK 500 6 ARG A 32 0.32 SIDE CHAIN REMARK 500 6 ARG A 43 0.12 SIDE CHAIN REMARK 500 6 ARG A 62 0.29 SIDE CHAIN REMARK 500 6 ARG A 76 0.27 SIDE CHAIN REMARK 500 6 ARG A 81 0.30 SIDE CHAIN REMARK 500 7 ARG A 21 0.24 SIDE CHAIN REMARK 500 7 ARG A 23 0.26 SIDE CHAIN REMARK 500 7 ARG A 31 0.24 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 79 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: WR64TT RELATED DB: TARGETDB DBREF 1L7B A 2 90 UNP P26996 DNLJ_THET8 588 676 SEQADV 1L7B MET A 1 UNP P26996 SEE REMARK 999 SEQADV 1L7B GLY A 91 UNP P26996 SEE REMARK 999 SEQADV 1L7B SER A 92 UNP P26996 SEE REMARK 999 SEQRES 1 A 92 MET GLU LYS GLY GLY GLU ALA LEU LYS GLY LEU THR PHE SEQRES 2 A 92 VAL ILE THR GLY GLU LEU SER ARG PRO ARG GLU GLU VAL SEQRES 3 A 92 LYS ALA LEU LEU ARG ARG LEU GLY ALA LYS VAL THR ASP SEQRES 4 A 92 SER VAL SER ARG LYS THR SER TYR LEU VAL VAL GLY GLU SEQRES 5 A 92 ASN PRO GLY SER LYS LEU GLU LYS ALA ARG ALA LEU GLY SEQRES 6 A 92 VAL PRO THR LEU THR GLU GLU GLU LEU TYR ARG LEU LEU SEQRES 7 A 92 GLU ALA ARG THR GLY LYS LYS ALA GLU GLU LEU VAL GLY SEQRES 8 A 92 SER HELIX 1 A1 ARG A 23 ARG A 31 1 9 HELIX 2 A2 LYS A 57 ALA A 63 1 7 HELIX 3 A3 GLU A 71 GLY A 83 1 13 SHEET 1 S1 4 ALA A 35 THR A 38 0 SHEET 2 S1 4 LEU A 11 ILE A 15 1 N THR A 38 O PHE A 13 SHEET 3 S1 4 TYR A 47 VAL A 50 1 N VAL A 49 O VAL A 14 SHEET 4 S1 4 THR A 68 THR A 70 1 O LEU A 48 N LEU A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1