HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-MAR-02 1L7Y TITLE SOLUTION NMR STRUCTURE OF C. ELEGANS PROTEIN ZK652.3. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET WR41. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ZK652.3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: ZK652.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS C.ELEGANS, UNKNOWN FUNCTION, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, ZK652.3, UBIQUITIN FOLD, BETA-GRASP FOLD, UFM1, KEYWDS 3 UBIQUITIN-FOLD MODIFIER 1, NESG, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 4 PROTEOMICS, HYPOTHETICAL, PSI, PROTEIN STRUCTURE INITIATIVE EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR J.R.CORT,Y.CHIANG,D.ZHENG,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 23-FEB-22 1L7Y 1 REMARK REVDAT 4 24-FEB-09 1L7Y 1 VERSN REVDAT 3 27-MAY-08 1L7Y 1 KEYWDS REVDAT 2 25-JAN-05 1L7Y 1 AUTHOR KEYWDS REMARK REVDAT 1 14-AUG-02 1L7Y 0 JRNL AUTH J.R.CORT,Y.CHIANG,D.ZHENG,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF CONSERVED EUKARYOTIC PROTEIN ZK652.3 FROM JRNL TITL 2 C. ELEGANS: A UBIQUITIN-LIKE FOLD. JRNL REF PROTEINS V. 48 733 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 12211038 JRNL DOI 10.1002/PROT.10197 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, X-PLOR 3.840 REMARK 3 AUTHORS : VARIAN, INC. (VNMR), A.T. BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE X-PLOR ROUTINES DG_FULL_EMBED.INP, REMARK 3 DGSA.INP, AND REFINE_GENTLE.INP WERE USED TO PRODUCE THE REMARK 3 STRUCTURAL ENSEMBLE REMARK 4 REMARK 4 1L7Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015728. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 10 MM AMMONIUM ACETATE, 50 MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM 99%-13C,99%-15N-ZK652.3 REMARK 210 10 MM AMMONIUM ACETATE, 50 MM REMARK 210 NACL, 10 MM DTT, 5% D2O, PH 5.5; REMARK 210 0.9 MM 13C,15N-ZK652.3 10 MM REMARK 210 AMMONIUM ACETATE, 50 MM NACL, 10 REMARK 210 MM DTT, 99% D2O; 0.9 MM 10%-13C, REMARK 210 99%-15N-ZK652.3 10 MM AMMONIUM REMARK 210 ACETATE, 50 MM NACL, 10 MM DTT, REMARK 210 5% D2O, PH 5.5; 0.9 MM 99%-15N- REMARK 210 ZK652.3 10 MM AMMONIUM ACETATE, REMARK 210 50 MM NACL, 10 MM DTT, 5% D2O, REMARK 210 PH 5.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C-SEPARATED_NOESY; REMARK 210 3D_SIMULTANEOUS_13C,15N-SEPARATED_NOESY; HNHA; 3D_15N-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, X-PLOR 3.840 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 70 -41.72 -132.96 REMARK 500 2 THR A 5 -70.40 -112.20 REMARK 500 2 ALA A 6 -120.76 -96.04 REMARK 500 2 ALA A 7 55.10 -103.80 REMARK 500 2 LYS A 25 124.74 67.42 REMARK 500 2 ALA A 70 -42.69 -135.52 REMARK 500 2 SER A 82 -50.87 -124.20 REMARK 500 3 THR A 5 -44.62 -143.03 REMARK 500 3 THR A 8 -72.21 -128.43 REMARK 500 3 THR A 9 -62.83 -138.09 REMARK 500 3 GLU A 83 106.43 -58.20 REMARK 500 4 THR A 5 130.88 67.91 REMARK 500 4 GLU A 35 82.73 -66.62 REMARK 500 4 SER A 36 -38.80 178.77 REMARK 500 4 PHE A 50 -83.26 -83.21 REMARK 500 4 LYS A 51 33.59 174.83 REMARK 500 4 ALA A 70 31.14 -142.34 REMARK 500 4 VAL A 92 -63.59 -107.95 REMARK 500 5 THR A 5 49.05 -155.00 REMARK 500 5 ALA A 10 -61.22 -128.50 REMARK 500 5 LYS A 25 73.48 -167.73 REMARK 500 5 LEU A 26 -66.10 -145.96 REMARK 500 5 GLU A 35 83.23 -64.72 REMARK 500 5 SER A 36 -39.33 -179.13 REMARK 500 5 ALA A 70 34.32 -144.35 REMARK 500 5 ARG A 89 144.26 71.38 REMARK 500 6 SER A 2 97.06 69.37 REMARK 500 6 GLU A 35 83.49 -65.05 REMARK 500 6 SER A 36 -37.62 -179.78 REMARK 500 6 LYS A 51 33.70 76.45 REMARK 500 6 ALA A 70 31.06 -153.80 REMARK 500 6 HIS A 80 -62.81 -93.33 REMARK 500 6 ASP A 90 78.25 -115.93 REMARK 500 7 ALA A 7 34.51 -93.56 REMARK 500 7 THR A 9 135.28 73.89 REMARK 500 7 LEU A 26 -58.22 -176.42 REMARK 500 7 PHE A 50 -81.97 -80.31 REMARK 500 7 LYS A 51 36.27 175.14 REMARK 500 7 ALA A 70 -39.82 -131.72 REMARK 500 7 HIS A 80 -65.28 -90.90 REMARK 500 7 ARG A 89 119.76 69.46 REMARK 500 7 ARG A 91 -153.38 -91.65 REMARK 500 8 ALA A 70 -43.40 -134.84 REMARK 500 8 HIS A 80 -63.42 -100.60 REMARK 500 8 GLU A 83 99.27 -62.81 REMARK 500 8 ASP A 90 106.55 63.90 REMARK 500 9 SER A 2 -55.83 -127.07 REMARK 500 9 THR A 5 -64.19 -105.81 REMARK 500 9 ALA A 70 -48.65 -139.80 REMARK 500 9 HIS A 80 -62.31 -94.19 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 85 0.31 SIDE CHAIN REMARK 500 1 ARG A 89 0.32 SIDE CHAIN REMARK 500 1 ARG A 91 0.30 SIDE CHAIN REMARK 500 2 ARG A 85 0.26 SIDE CHAIN REMARK 500 2 ARG A 89 0.31 SIDE CHAIN REMARK 500 2 ARG A 91 0.31 SIDE CHAIN REMARK 500 3 ARG A 85 0.30 SIDE CHAIN REMARK 500 3 ARG A 89 0.30 SIDE CHAIN REMARK 500 3 ARG A 91 0.31 SIDE CHAIN REMARK 500 4 ARG A 85 0.26 SIDE CHAIN REMARK 500 4 ARG A 89 0.32 SIDE CHAIN REMARK 500 4 ARG A 91 0.31 SIDE CHAIN REMARK 500 5 ARG A 85 0.32 SIDE CHAIN REMARK 500 5 ARG A 89 0.30 SIDE CHAIN REMARK 500 5 ARG A 91 0.32 SIDE CHAIN REMARK 500 6 ARG A 85 0.32 SIDE CHAIN REMARK 500 6 ARG A 89 0.31 SIDE CHAIN REMARK 500 6 ARG A 91 0.31 SIDE CHAIN REMARK 500 7 ARG A 85 0.31 SIDE CHAIN REMARK 500 7 ARG A 89 0.27 SIDE CHAIN REMARK 500 7 ARG A 91 0.31 SIDE CHAIN REMARK 500 8 ARG A 85 0.27 SIDE CHAIN REMARK 500 8 ARG A 89 0.31 SIDE CHAIN REMARK 500 8 ARG A 91 0.28 SIDE CHAIN REMARK 500 9 ARG A 85 0.31 SIDE CHAIN REMARK 500 9 ARG A 89 0.32 SIDE CHAIN REMARK 500 9 ARG A 91 0.23 SIDE CHAIN REMARK 500 10 ARG A 85 0.31 SIDE CHAIN REMARK 500 10 ARG A 89 0.22 SIDE CHAIN REMARK 500 10 ARG A 91 0.29 SIDE CHAIN REMARK 500 11 ARG A 85 0.30 SIDE CHAIN REMARK 500 11 ARG A 89 0.32 SIDE CHAIN REMARK 500 11 ARG A 91 0.21 SIDE CHAIN REMARK 500 12 ARG A 85 0.31 SIDE CHAIN REMARK 500 12 ARG A 89 0.32 SIDE CHAIN REMARK 500 12 ARG A 91 0.32 SIDE CHAIN REMARK 500 13 ARG A 85 0.32 SIDE CHAIN REMARK 500 13 ARG A 89 0.32 SIDE CHAIN REMARK 500 13 ARG A 91 0.32 SIDE CHAIN REMARK 500 14 ARG A 85 0.31 SIDE CHAIN REMARK 500 14 ARG A 89 0.32 SIDE CHAIN REMARK 500 14 ARG A 91 0.28 SIDE CHAIN REMARK 500 15 ARG A 85 0.28 SIDE CHAIN REMARK 500 15 ARG A 89 0.32 SIDE CHAIN REMARK 500 15 ARG A 91 0.32 SIDE CHAIN REMARK 500 16 ARG A 85 0.27 SIDE CHAIN REMARK 500 16 ARG A 89 0.31 SIDE CHAIN REMARK 500 16 ARG A 91 0.31 SIDE CHAIN REMARK 500 17 ARG A 85 0.32 SIDE CHAIN REMARK 500 17 ARG A 89 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 72 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: WR41 RELATED DB: TARGETDB DBREF 1L7Y A 1 94 UNP P34661 U185_CAEEL 1 94 SEQRES 1 A 94 MET SER GLY GLY THR ALA ALA THR THR ALA GLY SER LYS SEQRES 2 A 94 VAL THR PHE LYS ILE THR LEU THR SER ASP PRO LYS LEU SEQRES 3 A 94 PRO PHE LYS VAL LEU SER VAL PRO GLU SER THR PRO PHE SEQRES 4 A 94 THR ALA VAL LEU LYS PHE ALA ALA GLU GLU PHE LYS VAL SEQRES 5 A 94 PRO ALA ALA THR SER ALA ILE ILE THR ASN ASP GLY VAL SEQRES 6 A 94 GLY VAL ASN PRO ALA GLN PRO ALA GLY ASN ILE PHE LEU SEQRES 7 A 94 LYS HIS GLY SER GLU LEU ARG LEU ILE PRO ARG ASP ARG SEQRES 8 A 94 VAL GLY HIS HELIX 1 1 PRO A 38 LYS A 51 1 14 HELIX 2 2 PRO A 72 HIS A 80 1 9 SHEET 1 A 5 LYS A 29 PRO A 34 0 SHEET 2 A 5 LYS A 13 LEU A 20 -1 N VAL A 14 O VAL A 33 SHEET 3 A 5 GLU A 83 PRO A 88 1 O LEU A 86 N THR A 19 SHEET 4 A 5 SER A 57 ILE A 60 -1 N ALA A 58 O ILE A 87 SHEET 5 A 5 GLY A 66 VAL A 67 -1 O VAL A 67 N ILE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1