HEADER HYDROLASE 21-MAR-02 1L8L TITLE MOLECULAR BASIS FOR THE LOCAL CONFOMATIONAL REARRANGEMENT OF HUMAN TITLE 2 PHOSPHOSERINE PHOSPHATASE CAVEAT 1L8L CHIRALITY ERROR AT THE CA CENTER OF MET A 52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-3-PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PSP, O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHOSPHATASE, CONFORMATIONAL REARRANGEMENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.KIM,Y.S.HEO,J.H.KIM,M.H.PARK,J.MOON,S.Y.PARK,T.G.LEE,Y.H.JEON, AUTHOR 2 S.RO,K.Y.HWANG REVDAT 3 10-NOV-21 1L8L 1 REMARK SEQADV REVDAT 2 24-FEB-09 1L8L 1 VERSN REVDAT 1 01-APR-03 1L8L 0 JRNL AUTH H.Y.KIM,Y.S.HEO,J.H.KIM,M.H.PARK,J.MOON,E.KIM,D.KWON,J.YOON, JRNL AUTH 2 D.SHIN,E.J.JEONG,S.Y.PARK,T.G.LEE,Y.H.JEON,S.RO,J.M.CHO, JRNL AUTH 3 K.Y.HWANG JRNL TITL MOLECULAR BASIS FOR THE LOCAL CONFORMATIONAL REARRANGEMENT JRNL TITL 2 OF HUMAN PHOSPHOSERINE PHOSPHATASE. JRNL REF J.BIOL.CHEM. V. 277 46651 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12213811 JRNL DOI 10.1074/JBC.M204866200 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1149683.080 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 15098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1897 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 111 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.04000 REMARK 3 B22 (A**2) : -3.04000 REMARK 3 B33 (A**2) : 6.07000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 1.01 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.580 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 45.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : APO.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : APO.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 53.10650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 53.10650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.90600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 164 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 165 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU A 7 CD1 LEU A 10 0.54 REMARK 500 ND2 ASN B 140 OE1 GLU B 142 0.63 REMARK 500 O GLY A 53 N GLY A 54 0.95 REMARK 500 O GLY A 53 CA GLY A 54 1.27 REMARK 500 O LEU B 7 N ARG B 8 1.33 REMARK 500 O ARG A 101 OD1 ASN A 102 1.44 REMARK 500 C ARG A 101 OD1 ASN A 102 1.47 REMARK 500 O SER B 121 CA LYS B 122 1.53 REMARK 500 CG ASN B 140 OE1 GLU B 142 1.55 REMARK 500 O ALA A 144 N GLY A 145 1.58 REMARK 500 O GLU A 6 CG ARG A 8 1.59 REMARK 500 C SER B 121 CA LYS B 122 1.60 REMARK 500 CA GLY A 198 N ASN A 199 1.61 REMARK 500 O SER B 13 N ALA B 14 1.68 REMARK 500 O HIS A 4 O LEU A 7 1.69 REMARK 500 CG LEU A 7 CD1 LEU A 10 1.71 REMARK 500 CD1 LEU A 7 CG LEU A 10 1.77 REMARK 500 CD2 LEU B 7 OE1 GLU B 225 1.78 REMARK 500 O GLY B 53 N GLY B 54 1.78 REMARK 500 O CYS A 187 O ALA A 190 1.80 REMARK 500 CB GLU B 28 OE1 GLU B 33 1.83 REMARK 500 O GLU A 6 CB ARG A 8 1.85 REMARK 500 ND2 ASN B 140 CD GLU B 142 1.88 REMARK 500 C GLU A 6 CB ARG A 8 1.95 REMARK 500 NZ LYS B 136 O PHE B 146 2.02 REMARK 500 O ARG A 8 N LEU A 10 2.03 REMARK 500 NZ LYS B 136 C PHE B 146 2.06 REMARK 500 O LYS B 122 N ASN B 124 2.10 REMARK 500 NZ LYS B 136 N ASP B 147 2.10 REMARK 500 O HIS A 4 N LEU A 7 2.12 REMARK 500 O CYS B 187 O ALA B 190 2.14 REMARK 500 OD1 ASN B 140 OE1 GLU B 142 2.15 REMARK 500 O LEU A 68 CG GLN A 70 2.16 REMARK 500 O ASP A 20 CG2 VAL A 25 2.16 REMARK 500 ND2 ASN A 140 OE2 GLU A 142 2.17 REMARK 500 ND2 ASN B 133 O ASP B 147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 78 O GLU B 225 6455 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 10 C PHE A 11 N -0.374 REMARK 500 PHE A 19 C ASP A 20 N 0.253 REMARK 500 ASP A 20 C VAL A 21 N -0.301 REMARK 500 GLY A 53 C GLY A 54 N -0.547 REMARK 500 GLY A 54 N GLY A 54 CA 0.116 REMARK 500 GLY A 54 CA GLY A 54 C 0.132 REMARK 500 GLY A 54 C ALA A 55 N -0.222 REMARK 500 ALA A 55 C VAL A 56 N -0.180 REMARK 500 ALA A 67 C LEU A 68 N 0.258 REMARK 500 ASN A 140 CB ASN A 140 CG 0.142 REMARK 500 ALA A 144 C GLY A 145 N -0.242 REMARK 500 GLY A 145 C PHE A 146 N 0.273 REMARK 500 PRO A 151 C THR A 152 N 0.144 REMARK 500 GLY A 198 CA GLY A 198 C -0.479 REMARK 500 TRP A 211 NE1 TRP A 211 CE2 0.118 REMARK 500 SER B 5 C GLU B 6 N 0.206 REMARK 500 GLU B 6 C LEU B 7 N -0.427 REMARK 500 LEU B 7 C ARG B 8 N -0.826 REMARK 500 SER B 13 C ALA B 14 N -0.542 REMARK 500 ALA B 14 C ASP B 15 N -0.262 REMARK 500 GLY B 53 C GLY B 54 N -0.427 REMARK 500 PRO B 57 C PHE B 58 N -0.261 REMARK 500 PHE B 58 C PHE B 58 O -0.231 REMARK 500 SER B 114 N SER B 114 CA -0.123 REMARK 500 SER B 114 CB SER B 114 OG 0.086 REMARK 500 ILE B 125 C PRO B 126 N -0.158 REMARK 500 PRO B 126 C ALA B 127 N -0.220 REMARK 500 THR B 214 C ASP B 215 N -0.352 REMARK 500 ASP B 215 C PHE B 216 N 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 LEU A 7 N - CA - C ANGL. DEV. = -35.0 DEGREES REMARK 500 ARG A 8 N - CA - CB ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 8 N - CA - C ANGL. DEV. = 35.5 DEGREES REMARK 500 LEU A 10 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 10 CA - C - N ANGL. DEV. = -20.9 DEGREES REMARK 500 ASP A 20 C - N - CA ANGL. DEV. = 21.6 DEGREES REMARK 500 VAL A 21 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 VAL A 21 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 GLY A 30 C - N - CA ANGL. DEV. = -19.9 DEGREES REMARK 500 THR A 48 CB - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 THR A 48 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG A 49 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ALA A 51 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 GLY A 53 CA - C - N ANGL. DEV. = 46.8 DEGREES REMARK 500 GLY A 53 O - C - N ANGL. DEV. = -72.6 DEGREES REMARK 500 GLY A 54 C - N - CA ANGL. DEV. = 18.0 DEGREES REMARK 500 GLY A 54 CA - C - N ANGL. DEV. = -20.0 DEGREES REMARK 500 ALA A 55 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL A 56 C - N - CA ANGL. DEV. = -24.4 DEGREES REMARK 500 VAL A 56 N - CA - CB ANGL. DEV. = -28.5 DEGREES REMARK 500 PRO A 57 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 LYS A 59 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 ALA A 67 CA - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 ALA A 67 O - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU A 68 C - N - CA ANGL. DEV. = -28.6 DEGREES REMARK 500 GLN A 70 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 89 N - CA - C ANGL. DEV. = 36.1 DEGREES REMARK 500 ARG A 97 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 101 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 101 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 ALA A 132 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 ALA A 144 CA - C - N ANGL. DEV. = 38.2 DEGREES REMARK 500 ALA A 144 O - C - N ANGL. DEV. = -37.9 DEGREES REMARK 500 GLY A 145 C - N - CA ANGL. DEV. = 47.4 DEGREES REMARK 500 GLY A 145 CA - C - N ANGL. DEV. = -25.9 DEGREES REMARK 500 GLY A 145 O - C - N ANGL. DEV. = 21.7 DEGREES REMARK 500 PHE A 146 C - N - CA ANGL. DEV. = -32.9 DEGREES REMARK 500 PHE A 146 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 PHE A 146 O - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO A 151 CB - CA - C ANGL. DEV. = 26.1 DEGREES REMARK 500 THR A 152 N - CA - CB ANGL. DEV. = -20.3 DEGREES REMARK 500 THR A 152 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 LYS A 163 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LYS A 163 CD - CE - NZ ANGL. DEV. = -17.0 DEGREES REMARK 500 GLU A 167 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS A 168 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ALA A 190 CB - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 191 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ALA A 192 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 125 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 6 -33.08 -33.33 REMARK 500 ARG A 8 17.87 96.52 REMARK 500 LYS A 9 22.50 28.41 REMARK 500 THR A 24 -55.65 -151.47 REMARK 500 GLU A 41 -82.92 -43.19 REMARK 500 SER A 45 -3.51 -59.88 REMARK 500 MET A 52 -64.84 -162.58 REMARK 500 ILE A 69 -53.33 -12.10 REMARK 500 PRO A 89 11.57 6.05 REMARK 500 ASN A 102 55.57 92.00 REMARK 500 ASN A 129 54.62 -90.48 REMARK 500 PRO A 151 -59.18 -29.06 REMARK 500 HIS A 170 74.63 46.46 REMARK 500 LYS A 172 115.25 68.45 REMARK 500 LYS A 173 62.01 77.03 REMARK 500 ARG A 202 73.80 30.02 REMARK 500 TRP A 211 84.21 72.75 REMARK 500 GLU B 6 141.13 78.82 REMARK 500 LEU B 7 80.68 48.54 REMARK 500 LYS B 9 -18.96 -36.49 REMARK 500 SER B 23 54.46 37.89 REMARK 500 THR B 24 -64.63 -129.54 REMARK 500 GLN B 70 72.20 61.90 REMARK 500 ALA B 81 -70.53 -75.36 REMARK 500 GLU B 82 -3.08 -58.42 REMARK 500 GLN B 83 71.22 21.96 REMARK 500 ASN B 102 37.40 85.55 REMARK 500 LEU B 123 -3.68 -47.61 REMARK 500 SER B 155 99.02 -59.14 REMARK 500 LYS B 168 -75.80 -58.91 REMARK 500 HIS B 170 91.20 54.92 REMARK 500 PHE B 196 124.67 -174.31 REMARK 500 ILE B 201 -72.43 -104.09 REMARK 500 ARG B 202 80.97 36.61 REMARK 500 GLN B 203 -60.01 -28.49 REMARK 500 GLN B 204 -69.45 -7.86 REMARK 500 TRP B 211 88.70 63.99 REMARK 500 ASP B 215 106.71 94.30 REMARK 500 LEU B 219 -9.72 -150.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 29 GLY A 30 -145.13 REMARK 500 MET A 52 GLY A 53 115.03 REMARK 500 GLY A 53 GLY A 54 92.88 REMARK 500 ALA A 144 GLY A 145 36.48 REMARK 500 GLY A 197 GLY A 198 144.77 REMARK 500 LEU B 7 ARG B 8 -129.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE B 58 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 10 -15.46 REMARK 500 ARG A 49 -19.25 REMARK 500 GLY A 53 -107.68 REMARK 500 GLY A 54 14.93 REMARK 500 ALA A 55 22.30 REMARK 500 LYS A 59 -14.79 REMARK 500 ARG A 97 16.41 REMARK 500 GLU A 154 -16.31 REMARK 500 GLY A 198 26.89 REMARK 500 SER B 5 16.78 REMARK 500 LEU B 7 -26.20 REMARK 500 SER B 13 -12.12 REMARK 500 ALA B 14 -15.50 REMARK 500 SER B 23 -27.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APO A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APO B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L8O RELATED DB: PDB REMARK 900 1L8O CONTATINS CRYSTAL STRUCTURE OF THE SAME PROTEIN COMPLEX WITH REMARK 900 PO4 AND SER DBREF 1L8L A 1 225 UNP P78330 SERB_HUMAN 1 225 DBREF 1L8L B 1 225 UNP P78330 SERB_HUMAN 1 225 SEQADV 1L8L PHE A 164 UNP P78330 LEU 164 ENGINEERED MUTATION SEQADV 1L8L PHE B 164 UNP P78330 LEU 164 ENGINEERED MUTATION SEQRES 1 A 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 A 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 A 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 A 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 A 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 A 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 A 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 A 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 A 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 A 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 A 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 A 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 A 225 GLY LYS GLY LYS VAL ILE LYS PHE LEU LYS GLU LYS PHE SEQRES 14 A 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 A 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 A 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 A 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 A 225 GLU LEU GLU GLU SEQRES 1 B 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 B 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 B 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 B 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 B 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 B 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 B 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 B 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 B 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 B 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 B 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 B 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 B 225 GLY LYS GLY LYS VAL ILE LYS PHE LEU LYS GLU LYS PHE SEQRES 14 B 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 B 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 B 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 B 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 B 225 GLU LEU GLU GLU HET APO A 800 10 HET APO B 801 10 HETNAM APO D-2-AMINO-3-PHOSPHONO-PROPIONIC ACID FORMUL 3 APO 2(C3 H8 N O5 P) HELIX 1 1 LYS A 9 ALA A 14 5 6 HELIX 2 2 ILE A 31 ILE A 37 1 7 HELIX 3 3 VAL A 40 SER A 45 1 6 HELIX 4 4 PRO A 57 GLN A 70 1 14 HELIX 5 5 SER A 72 GLN A 83 1 12 HELIX 6 6 GLY A 90 GLU A 100 1 11 HELIX 7 7 ARG A 113 LEU A 123 1 11 HELIX 8 8 GLN A 150 GLU A 154 5 5 HELIX 9 9 GLY A 157 HIS A 170 1 14 HELIX 10 10 GLY A 180 GLU A 185 1 6 HELIX 11 11 ARG A 202 ASP A 207 1 6 HELIX 12 12 LEU A 220 GLU A 225 1 6 HELIX 13 13 GLU B 29 ILE B 37 1 9 HELIX 14 14 VAL B 40 ALA B 51 1 12 HELIX 15 15 PRO B 57 GLN B 70 1 14 HELIX 16 16 SER B 72 ARG B 78 1 7 HELIX 17 17 ARG B 78 GLN B 83 1 6 HELIX 18 18 ILE B 91 ARG B 101 1 11 HELIX 19 19 ARG B 113 LEU B 123 1 11 HELIX 20 20 GLN B 150 GLU B 154 5 5 HELIX 21 21 GLY B 157 HIS B 170 1 14 HELIX 22 22 GLY B 180 GLU B 185 1 6 HELIX 23 23 ARG B 202 ASP B 207 1 6 HELIX 24 24 PHE B 216 GLY B 221 1 6 SHEET 1 A 6 VAL A 130 ASN A 133 0 SHEET 2 A 6 GLN A 104 PHE A 112 1 N LEU A 107 O PHE A 131 SHEET 3 A 6 ALA A 16 ASP A 20 1 N PHE A 19 O ILE A 108 SHEET 4 A 6 ILE A 174 GLY A 178 1 O ILE A 177 N CYS A 18 SHEET 5 A 6 ALA A 192 PHE A 196 1 O ILE A 194 N MET A 176 SHEET 6 A 6 TYR A 212 ILE A 213 1 O ILE A 213 N GLY A 195 SHEET 1 B 3 TYR A 143 PHE A 146 0 SHEET 2 B 3 LEU A 135 TYR A 138 -1 N LYS A 136 O ALA A 144 SHEET 3 B 3 LYS B 136 TYR B 138 -1 O PHE B 137 N PHE A 137 SHEET 1 C 5 VAL B 130 ASN B 133 0 SHEET 2 C 5 GLN B 104 PHE B 112 1 N LEU B 107 O PHE B 131 SHEET 3 C 5 ALA B 16 PHE B 19 1 N PHE B 19 O PHE B 106 SHEET 4 C 5 ILE B 174 ILE B 177 1 O ILE B 175 N CYS B 18 SHEET 5 C 5 ALA B 192 ILE B 194 1 O ALA B 192 N MET B 176 CISPEP 1 LEU A 7 ARG A 8 0 0.09 SITE 1 AC1 9 ASP A 20 ASP A 22 GLU A 29 SER A 109 SITE 2 AC1 9 GLY A 110 LYS A 158 ASP A 179 GLY A 180 SITE 3 AC1 9 THR A 182 SITE 1 AC2 9 ASP B 20 VAL B 21 ASP B 22 SER B 109 SITE 2 AC2 9 GLY B 110 LYS B 158 THR B 182 ASP B 183 SITE 3 AC2 9 ARG B 202 CRYST1 106.213 106.213 87.812 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011388 0.00000