HEADER HYDROLASE 21-MAR-02 1L8N
TITLE THE 1.5A CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS
TITLE 2 STEAROTHERMOPHILUS T-1, COMPLEXED WITH 4-O-METHYL-GLUCURONIC ACID AND
TITLE 3 XYLOTRIOSE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-D-GLUCURONIDASE;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.2.1.139;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 1422;
SOURCE 4 GENE: AGUA;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D
KEYWDS HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV,V.STOJANOFF,
AUTHOR 2 A.THOMPSON,Y.SHOHAM,G.SHOHAM
REVDAT 7 16-AUG-23 1L8N 1 HETSYN
REVDAT 6 29-JUL-20 1L8N 1 COMPND REMARK HETNAM LINK
REVDAT 6 2 1 SITE ATOM
REVDAT 5 13-JUL-11 1L8N 1 VERSN
REVDAT 4 24-FEB-09 1L8N 1 VERSN
REVDAT 3 27-JAN-04 1L8N 1 JRNL
REVDAT 2 28-OCT-03 1L8N 1 REMARK JRNL AUTHOR SOURCE
REVDAT 1 21-MAR-03 1L8N 0
JRNL AUTH G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV,
JRNL AUTH 2 V.STOJANOFF,A.THOMPSON,Y.SHOHAM,G.SHOHAM
JRNL TITL CRYSTAL STRUCTURES OF GEOBACILLUS STEAROTHERMOPHILUS
JRNL TITL 2 {ALPHA}-GLUCURONIDASE COMPLEXED WITH ITS SUBSTRATE AND
JRNL TITL 3 PRODUCTS: MECHANISTIC IMPLICATIONS.
JRNL REF J.BIOL.CHEM. V. 279 3014 2004
JRNL REFN ISSN 0021-9258
JRNL PMID 14573597
JRNL DOI 10.1074/JBC.M310098200
REMARK 2
REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1
REMARK 3 CROSS-VALIDATION METHOD : FREE R
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF).
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.140
REMARK 3 FREE R VALUE (NO CUTOFF) : 0.172
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 7157
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 141046
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).
REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL
REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL
REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5488
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 117
REMARK 3 SOLVENT ATOMS : 667
REMARK 3
REMARK 3 MODEL REFINEMENT.
REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL
REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL
REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 42
REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL
REMARK 3 NUMBER OF RESTRAINTS : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.
REMARK 3 BOND LENGTHS (A) : 0.012
REMARK 3 ANGLE DISTANCES (A) : NULL
REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL
REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL
REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL
REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL
REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL
REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL
REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL
REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED: NULL
REMARK 3
REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER
REMARK 3 SPECIAL CASE: NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1L8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-02.
REMARK 100 THE DEPOSITION ID IS D_1000015743.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-JUL-01
REMARK 200 TEMPERATURE (KELVIN) : 95
REMARK 200 PH : 5.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X25
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : BRANDEIS
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145976
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 200 DATA REDUNDANCY : 15.00
REMARK 200 R MERGE (I) : 0.11000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53
REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.39900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: PDB CODE 1K9D
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.30
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE PH 5.0, 14% PEG 4000,
REMARK 280 12% ISO-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 165.67050
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.97300
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.97300
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.83525
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.97300
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.97300
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 248.50575
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.97300
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.97300
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.83525
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.97300
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.97300
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 248.50575
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 165.67050
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 331.34100
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1078 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1146 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 THR A 2
REMARK 465 ALA A 3
REMARK 465 ASP A 99
REMARK 465 GLY A 100
REMARK 465 LYS A 175
REMARK 465 GLN A 176
REMARK 465 ARG A 679
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 330 CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU A 243 CG GLU A 243 CD 0.893
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES
REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES
REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES
REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES
REMARK 500 ILE A 67 CB - CA - C ANGL. DEV. = -14.7 DEGREES
REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES
REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES
REMARK 500 MET A 127 CA - CB - CG ANGL. DEV. = -12.3 DEGREES
REMARK 500 TYR A 183 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES
REMARK 500 TYR A 183 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 GLU A 243 CG - CD - OE1 ANGL. DEV. = -28.2 DEGREES
REMARK 500 GLU A 243 CG - CD - OE2 ANGL. DEV. = -28.1 DEGREES
REMARK 500 TYR A 293 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES
REMARK 500 ASP A 296 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES
REMARK 500 ASP A 296 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES
REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES
REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES
REMARK 500 TYR A 435 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 ARG A 507 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 ARG A 507 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG A 555 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES
REMARK 500 ARG A 555 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500 ARG A 623 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES
REMARK 500 ARG A 637 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES
REMARK 500 ARG A 644 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES
REMARK 500 ASP A 670 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES
REMARK 500 ARG A 675 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 8 -125.47 55.91
REMARK 500 LEU A 10 57.61 -97.20
REMARK 500 MET A 363 -91.21 -106.51
REMARK 500 ASP A 364 76.68 -168.31
REMARK 500 TYR A 416 19.68 59.95
REMARK 500 SER A 422 52.85 -107.53
REMARK 500 TRP A 452 -39.93 70.76
REMARK 500 THR A 513 -134.93 -109.53
REMARK 500 TRP A 520 -131.95 67.03
REMARK 500 ASN A 531 90.22 -162.73
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 GLU A 243 0.25 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600 THE PRODUCT IS XYLOTRIOSE. IN THE ENTRY,
REMARK 600 XYP 702 AND XYP 703 ARE COVALENTLY BOUND.
REMARK 600 THE THIRD XYLOSE IS NOT MODELED DUE TO LACK
REMARK 600 OF FIXED POSITION AND CLEAR DENSITY. THE
REMARK 600 BOND BETWEEN GCW 701 AND XYP 702 WAS BROKEN
REMARK 600 BY THE ENZYME.
REMARK 600 ALSO, XYP 702 AND GOL 763 OCCUPY THE SAME SPACE
REMARK 600 AND EACH HAVE HALF OCCUPANCY.
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1K9F RELATED DB: PDB
REMARK 900 RELATED ID: 1K9E RELATED DB: PDB
REMARK 900 RELATED ID: 1K9D RELATED DB: PDB
DBREF 1L8N A 1 679 GB 16930794 AAL32057 1 679
SEQRES 1 A 679 MET THR ALA GLY TYR GLU PRO CYS TRP LEU ARG TYR GLU
SEQRES 2 A 679 ARG LYS ASP GLN TYR SER ARG LEU ARG PHE GLU GLU ILE
SEQRES 3 A 679 VAL ALA LYS ARG THR SER PRO ILE PHE GLN ALA ALA VAL
SEQRES 4 A 679 GLU GLU LEU GLN LYS GLY LEU ARG SER MET MET GLU ILE
SEQRES 5 A 679 GLU PRO GLN VAL VAL GLN GLU VAL ASN GLU THR ALA ASN
SEQRES 6 A 679 SER ILE TRP LEU GLY THR LEU GLU ASP GLU GLU PHE GLU
SEQRES 7 A 679 ARG PRO LEU GLU GLY THR LEU VAL HIS PRO GLU GLY TYR
SEQRES 8 A 679 VAL ILE ARG SER ASP VAL ASP ASP GLY PRO PHE ARG ILE
SEQRES 9 A 679 TYR ILE ILE GLY LYS THR ASP ALA GLY VAL LEU TYR GLY
SEQRES 10 A 679 VAL PHE HIS PHE LEU ARG LEU LEU GLN MET GLY GLU ASN
SEQRES 11 A 679 ILE ALA GLN LEU SER ILE ILE GLU GLN PRO LYS ASN ARG
SEQRES 12 A 679 LEU ARG MET ILE ASN HIS TRP ASP ASN MET ASP GLY SER
SEQRES 13 A 679 ILE GLU ARG GLY TYR ALA GLY ARG SER ILE PHE PHE VAL
SEQRES 14 A 679 ASP ASP GLN PHE VAL LYS GLN ASN GLN ARG ILE LYS ASP
SEQRES 15 A 679 TYR ALA ARG LEU LEU ALA SER VAL GLY ILE ASN ALA ILE
SEQRES 16 A 679 SER ILE ASN ASN VAL ASN VAL HIS LYS THR GLU THR LYS
SEQRES 17 A 679 LEU ILE THR ASP HIS PHE LEU PRO ASP VAL ALA GLU VAL
SEQRES 18 A 679 ALA ASP ILE PHE ARG THR TYR GLY ILE LYS THR PHE LEU
SEQRES 19 A 679 SER ILE ASN TYR ALA SER PRO ILE GLU ILE GLY GLY LEU
SEQRES 20 A 679 PRO THR ALA ASP PRO LEU ASP PRO GLU VAL ARG TRP TRP
SEQRES 21 A 679 TRP LYS GLU THR ALA LYS ARG ILE TYR GLN TYR ILE PRO
SEQRES 22 A 679 ASP PHE GLY GLY PHE VAL VAL LYS ALA ASP SER GLU PHE
SEQRES 23 A 679 ARG PRO GLY PRO PHE THR TYR GLY ARG ASP HIS ALA GLU
SEQRES 24 A 679 GLY ALA ASN MET LEU ALA GLU ALA LEU ALA PRO PHE GLY
SEQRES 25 A 679 GLY LEU VAL ILE TRP ARG CYS PHE VAL TYR ASN CYS GLN
SEQRES 26 A 679 GLN ASP TRP ARG ASP ARG THR THR ASP ARG ALA LYS ALA
SEQRES 27 A 679 ALA TYR ASP HIS PHE LYS PRO LEU ASP GLY GLN PHE ARG
SEQRES 28 A 679 GLU ASN VAL ILE LEU GLN ILE LYS ASN GLY PRO MET ASP
SEQRES 29 A 679 PHE GLN VAL ARG GLU PRO VAL SER PRO LEU PHE GLY ALA
SEQRES 30 A 679 MET PRO LYS THR ASN GLN MET MET GLU VAL GLN ILE THR
SEQRES 31 A 679 GLN GLU TYR THR GLY GLN GLN LYS HIS LEU CYS PHE LEU
SEQRES 32 A 679 ILE PRO GLN TRP LYS GLU VAL LEU ASP PHE ASP THR TYR
SEQRES 33 A 679 ALA LYS GLY LYS GLY SER GLU VAL LYS LYS VAL ILE ASP
SEQRES 34 A 679 GLY SER LEU PHE ASP TYR ARG TYR SER GLY ILE ALA GLY
SEQRES 35 A 679 VAL SER ASN ILE GLY SER ASP PRO ASN TRP THR GLY HIS
SEQRES 36 A 679 THR LEU ALA GLN ALA ASN LEU TYR GLY PHE GLY ARG LEU
SEQRES 37 A 679 ALA TRP ASN PRO ASP LEU SER ALA GLU GLU ILE ALA ASN
SEQRES 38 A 679 GLU TRP VAL VAL GLN THR PHE GLY ASP ASP SER GLN VAL
SEQRES 39 A 679 VAL GLU THR ILE SER TRP MET LEU LEU SER SER TRP ARG
SEQRES 40 A 679 ILE TYR GLU ASN TYR THR SER PRO LEU GLY VAL GLY TRP
SEQRES 41 A 679 MET VAL ASN PRO GLY HIS HIS TYR GLY PRO ASN VAL ASP
SEQRES 42 A 679 GLY TYR GLU TYR SER HIS TRP GLY THR TYR HIS TYR ALA
SEQRES 43 A 679 ASP ARG ASP GLY ILE GLY VAL ASP ARG THR VAL ALA THR
SEQRES 44 A 679 GLY THR GLY TYR THR ALA GLN TYR PHE PRO GLU ASN ALA
SEQRES 45 A 679 ALA MET TYR GLU SER LEU ASP THR CYS PRO ASP GLU LEU
SEQRES 46 A 679 LEU LEU PHE PHE HIS HIS VAL PRO TYR THR HIS ARG LEU
SEQRES 47 A 679 HIS SER GLY GLU THR VAL ILE GLN HIS ILE TYR ASN THR
SEQRES 48 A 679 HIS PHE GLU GLY VAL GLU GLN ALA LYS GLN LEU ARG LYS
SEQRES 49 A 679 ARG TRP GLU GLN LEU LYS GLY LYS ILE ASP GLU LYS ARG
SEQRES 50 A 679 TYR HIS ASP VAL LEU GLU ARG LEU THR ILE GLN VAL GLU
SEQRES 51 A 679 HIS ALA LYS GLU TRP ARG ASP VAL ILE ASN THR TYR PHE
SEQRES 52 A 679 TYR ARG LYS SER GLY ILE ASP ASP GLN TYR GLY ARG LYS
SEQRES 53 A 679 ILE TYR ARG
HET XYP B 1 10
HET XYP B 2 9
HET GCW A 701 14
HET GOL A 750 6
HET GOL A 751 6
HET GOL A 752 6
HET GOL A 753 6
HET GOL A 754 6
HET GOL A 755 6
HET GOL A 756 6
HET GOL A 757 6
HET GOL A 758 6
HET GOL A 759 6
HET GOL A 760 6
HET GOL A 761 6
HET GOL A 762 6
HET GOL A 763 6
HETNAM XYP BETA-D-XYLOPYRANOSE
HETNAM GCW 4-O-METHYL-BETA-D-GLUCOPYRANURONIC ACID
HETNAM GOL GLYCEROL
HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE
HETSYN GCW 4-O-METHYL-BETA-D-GLUCURONIC ACID; 4-O-METHYL-D-
HETSYN 2 GCW GLUCURONIC ACID; 4-O-METHYL-GLUCURONIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 XYP 2(C5 H10 O5)
FORMUL 3 GCW C7 H12 O7
FORMUL 4 GOL 14(C3 H8 O3)
FORMUL 18 HOH *667(H2 O)
HELIX 1 1 SER A 32 GLU A 51 1 20
HELIX 2 2 GLU A 73 GLU A 75 5 3
HELIX 3 3 ARG A 79 THR A 84 1 6
HELIX 4 4 THR A 110 MET A 127 1 18
HELIX 5 5 ASN A 177 VAL A 190 1 14
HELIX 6 6 THR A 205 THR A 211 5 7
HELIX 7 7 PHE A 214 TYR A 228 1 15
HELIX 8 8 ALA A 239 ILE A 244 1 6
HELIX 9 9 ASP A 254 ILE A 272 1 19
HELIX 10 10 GLY A 289 GLY A 294 5 6
HELIX 11 11 ASP A 296 ALA A 309 1 14
HELIX 12 12 PRO A 310 GLY A 312 5 3
HELIX 13 13 ASP A 334 ALA A 336 5 3
HELIX 14 14 LYS A 337 LYS A 344 1 8
HELIX 15 15 PRO A 345 ASP A 347 5 3
HELIX 16 16 LEU A 403 ASP A 412 1 10
HELIX 17 17 GLU A 423 ASP A 429 1 7
HELIX 18 18 HIS A 455 LEU A 457 5 3
HELIX 19 19 ALA A 458 ASN A 471 1 14
HELIX 20 20 SER A 475 GLY A 489 1 15
HELIX 21 21 ASP A 491 THR A 513 1 23
HELIX 22 22 GLY A 562 TYR A 567 5 6
HELIX 23 23 PHE A 568 SER A 577 1 10
HELIX 24 24 PRO A 582 GLU A 584 5 3
HELIX 25 25 LEU A 585 HIS A 590 1 6
HELIX 26 26 THR A 603 GLN A 628 1 26
HELIX 27 27 ASP A 634 GLY A 668 1 35
SHEET 1 A 6 GLN A 55 VAL A 57 0
SHEET 2 A 6 GLU A 25 ALA A 28 1 N ILE A 26 O VAL A 57
SHEET 3 A 6 SER A 66 THR A 71 1 O LEU A 69 N VAL A 27
SHEET 4 A 6 ARG A 103 GLY A 108 1 O ILE A 104 N TRP A 68
SHEET 5 A 6 TYR A 91 SER A 95 -1 N ARG A 94 O TYR A 105
SHEET 6 A 6 SER A 135 GLU A 138 -1 O ILE A 136 N ILE A 93
SHEET 1 B 9 LEU A 144 ASN A 148 0
SHEET 2 B 9 ALA A 194 SER A 196 1 O SER A 196 N ILE A 147
SHEET 3 B 9 LYS A 231 ILE A 236 1 O PHE A 233 N ILE A 195
SHEET 4 B 9 GLY A 277 VAL A 280 1 O VAL A 279 N LEU A 234
SHEET 5 B 9 LEU A 314 ARG A 318 1 O ILE A 316 N PHE A 278
SHEET 6 B 9 VAL A 354 LYS A 359 1 O ILE A 355 N VAL A 315
SHEET 7 B 9 GLN A 383 GLN A 388 1 O MET A 384 N ILE A 358
SHEET 8 B 9 GLY A 439 VAL A 443 1 O ALA A 441 N MET A 385
SHEET 9 B 9 LEU A 144 ASN A 148 1 N MET A 146 O ILE A 440
SHEET 1 C 2 PHE A 168 VAL A 169 0
SHEET 2 C 2 GLN A 172 PHE A 173 -1 O GLN A 172 N VAL A 169
SHEET 1 D 2 GLY A 550 ILE A 551 0
SHEET 2 D 2 VAL A 592 PRO A 593 -1 O VAL A 592 N ILE A 551
LINK O4 XYP B 1 C1 AXYP B 2 1555 1555 1.41
CRYST1 73.946 73.946 331.341 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013523 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013523 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003018 0.00000