HEADER HYDROLASE 21-MAR-02 1L8N TITLE THE 1.5A CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS T-1, COMPLEXED WITH 4-O-METHYL-GLUCURONIC ACID AND TITLE 3 XYLOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-D-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.139; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: AGUA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV,V.STOJANOFF, AUTHOR 2 A.THOMPSON,Y.SHOHAM,G.SHOHAM REVDAT 7 16-AUG-23 1L8N 1 HETSYN REVDAT 6 29-JUL-20 1L8N 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 13-JUL-11 1L8N 1 VERSN REVDAT 4 24-FEB-09 1L8N 1 VERSN REVDAT 3 27-JAN-04 1L8N 1 JRNL REVDAT 2 28-OCT-03 1L8N 1 REMARK JRNL AUTHOR SOURCE REVDAT 1 21-MAR-03 1L8N 0 JRNL AUTH G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV, JRNL AUTH 2 V.STOJANOFF,A.THOMPSON,Y.SHOHAM,G.SHOHAM JRNL TITL CRYSTAL STRUCTURES OF GEOBACILLUS STEAROTHERMOPHILUS JRNL TITL 2 {ALPHA}-GLUCURONIDASE COMPLEXED WITH ITS SUBSTRATE AND JRNL TITL 3 PRODUCTS: MECHANISTIC IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 3014 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14573597 JRNL DOI 10.1074/JBC.M310098200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.140 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 7157 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 141046 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 667 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 42 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB CODE 1K9D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE PH 5.0, 14% PEG 4000, REMARK 280 12% ISO-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 165.67050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.97300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.97300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.83525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.97300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.97300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 248.50575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.97300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.97300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.83525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.97300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.97300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 248.50575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 165.67050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 331.34100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1078 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1146 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 LYS A 175 REMARK 465 GLN A 176 REMARK 465 ARG A 679 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 330 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 243 CG GLU A 243 CD 0.893 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ILE A 67 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 MET A 127 CA - CB - CG ANGL. DEV. = -12.3 DEGREES REMARK 500 TYR A 183 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 183 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU A 243 CG - CD - OE1 ANGL. DEV. = -28.2 DEGREES REMARK 500 GLU A 243 CG - CD - OE2 ANGL. DEV. = -28.1 DEGREES REMARK 500 TYR A 293 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 296 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 296 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 435 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 507 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 507 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 555 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 555 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 623 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 637 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 644 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 670 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 675 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -125.47 55.91 REMARK 500 LEU A 10 57.61 -97.20 REMARK 500 MET A 363 -91.21 -106.51 REMARK 500 ASP A 364 76.68 -168.31 REMARK 500 TYR A 416 19.68 59.95 REMARK 500 SER A 422 52.85 -107.53 REMARK 500 TRP A 452 -39.93 70.76 REMARK 500 THR A 513 -134.93 -109.53 REMARK 500 TRP A 520 -131.95 67.03 REMARK 500 ASN A 531 90.22 -162.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 243 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE PRODUCT IS XYLOTRIOSE. IN THE ENTRY, REMARK 600 XYP 702 AND XYP 703 ARE COVALENTLY BOUND. REMARK 600 THE THIRD XYLOSE IS NOT MODELED DUE TO LACK REMARK 600 OF FIXED POSITION AND CLEAR DENSITY. THE REMARK 600 BOND BETWEEN GCW 701 AND XYP 702 WAS BROKEN REMARK 600 BY THE ENZYME. REMARK 600 ALSO, XYP 702 AND GOL 763 OCCUPY THE SAME SPACE REMARK 600 AND EACH HAVE HALF OCCUPANCY. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K9F RELATED DB: PDB REMARK 900 RELATED ID: 1K9E RELATED DB: PDB REMARK 900 RELATED ID: 1K9D RELATED DB: PDB DBREF 1L8N A 1 679 GB 16930794 AAL32057 1 679 SEQRES 1 A 679 MET THR ALA GLY TYR GLU PRO CYS TRP LEU ARG TYR GLU SEQRES 2 A 679 ARG LYS ASP GLN TYR SER ARG LEU ARG PHE GLU GLU ILE SEQRES 3 A 679 VAL ALA LYS ARG THR SER PRO ILE PHE GLN ALA ALA VAL SEQRES 4 A 679 GLU GLU LEU GLN LYS GLY LEU ARG SER MET MET GLU ILE SEQRES 5 A 679 GLU PRO GLN VAL VAL GLN GLU VAL ASN GLU THR ALA ASN SEQRES 6 A 679 SER ILE TRP LEU GLY THR LEU GLU ASP GLU GLU PHE GLU SEQRES 7 A 679 ARG PRO LEU GLU GLY THR LEU VAL HIS PRO GLU GLY TYR SEQRES 8 A 679 VAL ILE ARG SER ASP VAL ASP ASP GLY PRO PHE ARG ILE SEQRES 9 A 679 TYR ILE ILE GLY LYS THR ASP ALA GLY VAL LEU TYR GLY SEQRES 10 A 679 VAL PHE HIS PHE LEU ARG LEU LEU GLN MET GLY GLU ASN SEQRES 11 A 679 ILE ALA GLN LEU SER ILE ILE GLU GLN PRO LYS ASN ARG SEQRES 12 A 679 LEU ARG MET ILE ASN HIS TRP ASP ASN MET ASP GLY SER SEQRES 13 A 679 ILE GLU ARG GLY TYR ALA GLY ARG SER ILE PHE PHE VAL SEQRES 14 A 679 ASP ASP GLN PHE VAL LYS GLN ASN GLN ARG ILE LYS ASP SEQRES 15 A 679 TYR ALA ARG LEU LEU ALA SER VAL GLY ILE ASN ALA ILE SEQRES 16 A 679 SER ILE ASN ASN VAL ASN VAL HIS LYS THR GLU THR LYS SEQRES 17 A 679 LEU ILE THR ASP HIS PHE LEU PRO ASP VAL ALA GLU VAL SEQRES 18 A 679 ALA ASP ILE PHE ARG THR TYR GLY ILE LYS THR PHE LEU SEQRES 19 A 679 SER ILE ASN TYR ALA SER PRO ILE GLU ILE GLY GLY LEU SEQRES 20 A 679 PRO THR ALA ASP PRO LEU ASP PRO GLU VAL ARG TRP TRP SEQRES 21 A 679 TRP LYS GLU THR ALA LYS ARG ILE TYR GLN TYR ILE PRO SEQRES 22 A 679 ASP PHE GLY GLY PHE VAL VAL LYS ALA ASP SER GLU PHE SEQRES 23 A 679 ARG PRO GLY PRO PHE THR TYR GLY ARG ASP HIS ALA GLU SEQRES 24 A 679 GLY ALA ASN MET LEU ALA GLU ALA LEU ALA PRO PHE GLY SEQRES 25 A 679 GLY LEU VAL ILE TRP ARG CYS PHE VAL TYR ASN CYS GLN SEQRES 26 A 679 GLN ASP TRP ARG ASP ARG THR THR ASP ARG ALA LYS ALA SEQRES 27 A 679 ALA TYR ASP HIS PHE LYS PRO LEU ASP GLY GLN PHE ARG SEQRES 28 A 679 GLU ASN VAL ILE LEU GLN ILE LYS ASN GLY PRO MET ASP SEQRES 29 A 679 PHE GLN VAL ARG GLU PRO VAL SER PRO LEU PHE GLY ALA SEQRES 30 A 679 MET PRO LYS THR ASN GLN MET MET GLU VAL GLN ILE THR SEQRES 31 A 679 GLN GLU TYR THR GLY GLN GLN LYS HIS LEU CYS PHE LEU SEQRES 32 A 679 ILE PRO GLN TRP LYS GLU VAL LEU ASP PHE ASP THR TYR SEQRES 33 A 679 ALA LYS GLY LYS GLY SER GLU VAL LYS LYS VAL ILE ASP SEQRES 34 A 679 GLY SER LEU PHE ASP TYR ARG TYR SER GLY ILE ALA GLY SEQRES 35 A 679 VAL SER ASN ILE GLY SER ASP PRO ASN TRP THR GLY HIS SEQRES 36 A 679 THR LEU ALA GLN ALA ASN LEU TYR GLY PHE GLY ARG LEU SEQRES 37 A 679 ALA TRP ASN PRO ASP LEU SER ALA GLU GLU ILE ALA ASN SEQRES 38 A 679 GLU TRP VAL VAL GLN THR PHE GLY ASP ASP SER GLN VAL SEQRES 39 A 679 VAL GLU THR ILE SER TRP MET LEU LEU SER SER TRP ARG SEQRES 40 A 679 ILE TYR GLU ASN TYR THR SER PRO LEU GLY VAL GLY TRP SEQRES 41 A 679 MET VAL ASN PRO GLY HIS HIS TYR GLY PRO ASN VAL ASP SEQRES 42 A 679 GLY TYR GLU TYR SER HIS TRP GLY THR TYR HIS TYR ALA SEQRES 43 A 679 ASP ARG ASP GLY ILE GLY VAL ASP ARG THR VAL ALA THR SEQRES 44 A 679 GLY THR GLY TYR THR ALA GLN TYR PHE PRO GLU ASN ALA SEQRES 45 A 679 ALA MET TYR GLU SER LEU ASP THR CYS PRO ASP GLU LEU SEQRES 46 A 679 LEU LEU PHE PHE HIS HIS VAL PRO TYR THR HIS ARG LEU SEQRES 47 A 679 HIS SER GLY GLU THR VAL ILE GLN HIS ILE TYR ASN THR SEQRES 48 A 679 HIS PHE GLU GLY VAL GLU GLN ALA LYS GLN LEU ARG LYS SEQRES 49 A 679 ARG TRP GLU GLN LEU LYS GLY LYS ILE ASP GLU LYS ARG SEQRES 50 A 679 TYR HIS ASP VAL LEU GLU ARG LEU THR ILE GLN VAL GLU SEQRES 51 A 679 HIS ALA LYS GLU TRP ARG ASP VAL ILE ASN THR TYR PHE SEQRES 52 A 679 TYR ARG LYS SER GLY ILE ASP ASP GLN TYR GLY ARG LYS SEQRES 53 A 679 ILE TYR ARG HET XYP B 1 10 HET XYP B 2 9 HET GCW A 701 14 HET GOL A 750 6 HET GOL A 751 6 HET GOL A 752 6 HET GOL A 753 6 HET GOL A 754 6 HET GOL A 755 6 HET GOL A 756 6 HET GOL A 757 6 HET GOL A 758 6 HET GOL A 759 6 HET GOL A 760 6 HET GOL A 761 6 HET GOL A 762 6 HET GOL A 763 6 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM GCW 4-O-METHYL-BETA-D-GLUCOPYRANURONIC ACID HETNAM GOL GLYCEROL HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN GCW 4-O-METHYL-BETA-D-GLUCURONIC ACID; 4-O-METHYL-D- HETSYN 2 GCW GLUCURONIC ACID; 4-O-METHYL-GLUCURONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 XYP 2(C5 H10 O5) FORMUL 3 GCW C7 H12 O7 FORMUL 4 GOL 14(C3 H8 O3) FORMUL 18 HOH *667(H2 O) HELIX 1 1 SER A 32 GLU A 51 1 20 HELIX 2 2 GLU A 73 GLU A 75 5 3 HELIX 3 3 ARG A 79 THR A 84 1 6 HELIX 4 4 THR A 110 MET A 127 1 18 HELIX 5 5 ASN A 177 VAL A 190 1 14 HELIX 6 6 THR A 205 THR A 211 5 7 HELIX 7 7 PHE A 214 TYR A 228 1 15 HELIX 8 8 ALA A 239 ILE A 244 1 6 HELIX 9 9 ASP A 254 ILE A 272 1 19 HELIX 10 10 GLY A 289 GLY A 294 5 6 HELIX 11 11 ASP A 296 ALA A 309 1 14 HELIX 12 12 PRO A 310 GLY A 312 5 3 HELIX 13 13 ASP A 334 ALA A 336 5 3 HELIX 14 14 LYS A 337 LYS A 344 1 8 HELIX 15 15 PRO A 345 ASP A 347 5 3 HELIX 16 16 LEU A 403 ASP A 412 1 10 HELIX 17 17 GLU A 423 ASP A 429 1 7 HELIX 18 18 HIS A 455 LEU A 457 5 3 HELIX 19 19 ALA A 458 ASN A 471 1 14 HELIX 20 20 SER A 475 GLY A 489 1 15 HELIX 21 21 ASP A 491 THR A 513 1 23 HELIX 22 22 GLY A 562 TYR A 567 5 6 HELIX 23 23 PHE A 568 SER A 577 1 10 HELIX 24 24 PRO A 582 GLU A 584 5 3 HELIX 25 25 LEU A 585 HIS A 590 1 6 HELIX 26 26 THR A 603 GLN A 628 1 26 HELIX 27 27 ASP A 634 GLY A 668 1 35 SHEET 1 A 6 GLN A 55 VAL A 57 0 SHEET 2 A 6 GLU A 25 ALA A 28 1 N ILE A 26 O VAL A 57 SHEET 3 A 6 SER A 66 THR A 71 1 O LEU A 69 N VAL A 27 SHEET 4 A 6 ARG A 103 GLY A 108 1 O ILE A 104 N TRP A 68 SHEET 5 A 6 TYR A 91 SER A 95 -1 N ARG A 94 O TYR A 105 SHEET 6 A 6 SER A 135 GLU A 138 -1 O ILE A 136 N ILE A 93 SHEET 1 B 9 LEU A 144 ASN A 148 0 SHEET 2 B 9 ALA A 194 SER A 196 1 O SER A 196 N ILE A 147 SHEET 3 B 9 LYS A 231 ILE A 236 1 O PHE A 233 N ILE A 195 SHEET 4 B 9 GLY A 277 VAL A 280 1 O VAL A 279 N LEU A 234 SHEET 5 B 9 LEU A 314 ARG A 318 1 O ILE A 316 N PHE A 278 SHEET 6 B 9 VAL A 354 LYS A 359 1 O ILE A 355 N VAL A 315 SHEET 7 B 9 GLN A 383 GLN A 388 1 O MET A 384 N ILE A 358 SHEET 8 B 9 GLY A 439 VAL A 443 1 O ALA A 441 N MET A 385 SHEET 9 B 9 LEU A 144 ASN A 148 1 N MET A 146 O ILE A 440 SHEET 1 C 2 PHE A 168 VAL A 169 0 SHEET 2 C 2 GLN A 172 PHE A 173 -1 O GLN A 172 N VAL A 169 SHEET 1 D 2 GLY A 550 ILE A 551 0 SHEET 2 D 2 VAL A 592 PRO A 593 -1 O VAL A 592 N ILE A 551 LINK O4 XYP B 1 C1 AXYP B 2 1555 1555 1.41 CRYST1 73.946 73.946 331.341 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003018 0.00000