HEADER HYDROLASE 27-MAR-02 1L9Y TITLE FEZ-1-Y228A, A MUTANT OF THE METALLO-BETA-LACTAMASE FROM LEGIONELLA TITLE 2 GORMANII COMPND MOL_ID: 1; COMPND 2 MOLECULE: FEZ-1 B-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FEZ-1 PROTEIN; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLUORIBACTER GORMANII; SOURCE 3 ORGANISM_TAXID: 464; SOURCE 4 GENE: BLAFEZ-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOMER WITH ALPHA-BETA/BETA-ALPHA FOLD, TWO MONOMERS PER ASSYMMETRIC KEYWDS 2 UNIT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.GARCIA-SAEZ,P.S.MERCURI,M.GALLENI,O.DIDEBERG REVDAT 5 16-AUG-23 1L9Y 1 REMARK REVDAT 4 27-OCT-21 1L9Y 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1L9Y 1 VERSN REVDAT 2 24-FEB-09 1L9Y 1 VERSN REVDAT 1 01-JUL-03 1L9Y 0 JRNL AUTH I.GARCIA-SAEZ,P.S.MERCURI,C.PAPAMICAEL,R.KAHN,J.M.FRRE, JRNL AUTH 2 M.GALLENI,G.M.ROSSOLINI,O.DIDEBERG JRNL TITL THREE-DIMENSIONAL STRUCTURE OF FEZ-1, A MONOMERIC SUBCLASS JRNL TITL 2 B3 METALLO-BETA-LACTAMASE FROM FLUORIBACTER GORMANII, IN JRNL TITL 3 NATIVE FORM AND IN COMPLEX WITH -CAPTOPRIL JRNL REF J.MOL.BIOL. V. 325 651 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12507470 JRNL DOI 10.1016/S0022-2836(02)01271-8 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 33305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3304 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2093 REMARK 3 BIN FREE R VALUE : 0.2321 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47000 REMARK 3 B22 (A**2) : -1.56200 REMARK 3 B33 (A**2) : 0.09300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.76800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.557 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.896 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.826 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.163 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 56.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : SULF.PARAM REMARK 3 PARAMETER FILE 5 : GLYC.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINEMENT OF DOUBLE CONFORMATION OF RESIDUES 168 AND 255 IN REMARK 3 MONOMER A, REMARK 3 AND RESIDUES 38, 168 AND 255 IN MONOMER B. REFINEMENT OF TWO REMARK 3 DIFFERENT POSITIONS REMARK 3 OF WATER MOLECULES 89 AND 126. REMARK 4 REMARK 4 1L9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 54.233 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : 0.11800 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1K07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG MME 5000, 0.2M AMM.SULFATE, REMARK 280 0.1M CACOD.ACID/NA CACODYLATE, 10MICROM ZN ACETATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 149.37 -174.53 REMARK 500 THR A 57 -165.62 -104.52 REMARK 500 ASP A 67 -80.90 -136.87 REMARK 500 ASN A 84 116.08 79.06 REMARK 500 ASP A 86 -152.74 52.69 REMARK 500 SER A 221 130.69 133.50 REMARK 500 ASN A 282 94.36 1.27 REMARK 500 ALA B 49 147.17 -174.25 REMARK 500 THR B 57 -164.72 -102.75 REMARK 500 ASP B 67 -79.73 -136.26 REMARK 500 ASN B 84 112.08 77.34 REMARK 500 ASP B 86 -149.06 55.44 REMARK 500 SER B 221 129.91 133.79 REMARK 500 ASN B 282 95.40 -10.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 95.0 REMARK 620 3 HIS A 196 NE2 99.5 103.1 REMARK 620 4 SO4 A 501 O4 160.6 96.7 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 HIS A 121 NE2 90.3 REMARK 620 3 HIS A 263 NE2 94.5 93.5 REMARK 620 4 SO4 A 501 O3 88.5 170.2 96.2 REMARK 620 5 HOH A 645 O 162.4 107.1 87.0 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 99.4 REMARK 620 3 HIS B 196 NE2 97.4 101.5 REMARK 620 4 SO4 B 503 O2 158.4 97.5 92.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 HIS B 121 NE2 96.2 REMARK 620 3 HIS B 263 NE2 92.2 94.1 REMARK 620 4 SO4 B 503 O3 89.5 169.7 94.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K07 RELATED DB: PDB REMARK 900 NATIVE FEZ-1 METALLO-BETA-LACTAMASE FROM LEGIONELLA GORMANII REMARK 900 RELATED ID: 1JT1 RELATED DB: PDB REMARK 900 FEZ-1 METALLO-BETA-LACTAMASE FROM LEGIONELLA GORMANII MODELED WITH REMARK 900 D-CAPTOPRIL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A CONFLICT BETWEEN SEQRES(SER277 AND GLY311) REMARK 999 AND SEQUENCE DATABASE(GB8980430). REMARK 999 THE AUTHORS BELIEVE THAT SER277 AND GLY311 ARE CORRECT REMARK 999 AND ARE THE TRUE IDENTITIES OF THESE RESIDUES, REMARK 999 RESPECTIVELY. REMARK 999 RESIDUES ARE NUMBERED FOLLOWING THE STANDARD NUMBERING REMARK 999 FOR CLASS B BETA-LACTAMASES, (BBL NUMBERING). REMARK 999 (GALLENI M. ET AL. . 2001. "STANDARD NUMBERING SCHEME REMARK 999 FOR CLASS B BETA-LACTAMASES". ANTIMICROB.AGENTS CHEMOTHER. REMARK 999 MARCH, P. 660-663). DBREF 1L9Y A 35 311 UNP Q9K578 Q9K578_9GAMM 20 282 DBREF 1L9Y B 35 311 UNP Q9K578 Q9K578_9GAMM 20 282 SEQADV 1L9Y ALA A 228 UNP Q9K578 TYR 200 ENGINEERED MUTATION SEQADV 1L9Y SER A 277 UNP Q9K578 GLN 248 SEE REMARK 999 SEQADV 1L9Y GLY A 311 UNP Q9K578 ALA 282 SEE REMARK 999 SEQADV 1L9Y ALA B 228 UNP Q9K578 TYR 200 ENGINEERED MUTATION SEQADV 1L9Y SER B 277 UNP Q9K578 GLN 248 SEE REMARK 999 SEQADV 1L9Y GLY B 311 UNP Q9K578 ALA 282 SEE REMARK 999 SEQRES 1 A 263 ALA TYR PRO MET PRO ASN PRO PHE PRO PRO PHE ARG ILE SEQRES 2 A 263 ALA GLY ASN LEU TYR TYR VAL GLY THR ASP ASP LEU ALA SEQRES 3 A 263 SER TYR LEU ILE VAL THR PRO ARG GLY ASN ILE LEU ILE SEQRES 4 A 263 ASN SER ASP LEU GLU ALA ASN VAL PRO MET ILE LYS ALA SEQRES 5 A 263 SER ILE LYS LYS LEU GLY PHE LYS PHE SER ASP THR LYS SEQRES 6 A 263 ILE LEU LEU ILE SER HIS ALA HIS PHE ASP HIS ALA ALA SEQRES 7 A 263 GLY SER GLU LEU ILE LYS GLN GLN THR LYS ALA LYS TYR SEQRES 8 A 263 MET VAL MET ASP GLU ASP VAL SER VAL ILE LEU SER GLY SEQRES 9 A 263 GLY LYS SER ASP PHE HIS TYR ALA ASN ASP SER SER THR SEQRES 10 A 263 TYR PHE THR GLN SER THR VAL ASP LYS VAL LEU HIS ASP SEQRES 11 A 263 GLY GLU ARG VAL GLU LEU GLY GLY THR VAL LEU THR ALA SEQRES 12 A 263 HIS LEU THR PRO GLY HIS THR ARG GLY CYS THR THR TRP SEQRES 13 A 263 THR MET LYS LEU LYS ASP HIS GLY LYS GLN TYR GLN ALA SEQRES 14 A 263 VAL ILE ILE GLY SER ILE GLY VAL ASN PRO GLY ALA LYS SEQRES 15 A 263 LEU VAL ASP ASN ILE THR TYR PRO LYS ILE ALA GLU ASP SEQRES 16 A 263 TYR LYS HIS SER ILE LYS VAL LEU GLU SER MET ARG CYS SEQRES 17 A 263 ASP ILE PHE LEU GLY SER HIS ALA GLY MET PHE ASP LEU SEQRES 18 A 263 LYS ASN LYS TYR VAL LEU LEU SER LYS GLY GLN ASN ASN SEQRES 19 A 263 PRO PHE VAL ASP PRO THR GLY CYS LYS ASN TYR ILE GLU SEQRES 20 A 263 GLN LYS ALA ASN ASP PHE TYR THR GLU LEU LYS LYS GLN SEQRES 21 A 263 GLU THR GLY SEQRES 1 B 263 ALA TYR PRO MET PRO ASN PRO PHE PRO PRO PHE ARG ILE SEQRES 2 B 263 ALA GLY ASN LEU TYR TYR VAL GLY THR ASP ASP LEU ALA SEQRES 3 B 263 SER TYR LEU ILE VAL THR PRO ARG GLY ASN ILE LEU ILE SEQRES 4 B 263 ASN SER ASP LEU GLU ALA ASN VAL PRO MET ILE LYS ALA SEQRES 5 B 263 SER ILE LYS LYS LEU GLY PHE LYS PHE SER ASP THR LYS SEQRES 6 B 263 ILE LEU LEU ILE SER HIS ALA HIS PHE ASP HIS ALA ALA SEQRES 7 B 263 GLY SER GLU LEU ILE LYS GLN GLN THR LYS ALA LYS TYR SEQRES 8 B 263 MET VAL MET ASP GLU ASP VAL SER VAL ILE LEU SER GLY SEQRES 9 B 263 GLY LYS SER ASP PHE HIS TYR ALA ASN ASP SER SER THR SEQRES 10 B 263 TYR PHE THR GLN SER THR VAL ASP LYS VAL LEU HIS ASP SEQRES 11 B 263 GLY GLU ARG VAL GLU LEU GLY GLY THR VAL LEU THR ALA SEQRES 12 B 263 HIS LEU THR PRO GLY HIS THR ARG GLY CYS THR THR TRP SEQRES 13 B 263 THR MET LYS LEU LYS ASP HIS GLY LYS GLN TYR GLN ALA SEQRES 14 B 263 VAL ILE ILE GLY SER ILE GLY VAL ASN PRO GLY ALA LYS SEQRES 15 B 263 LEU VAL ASP ASN ILE THR TYR PRO LYS ILE ALA GLU ASP SEQRES 16 B 263 TYR LYS HIS SER ILE LYS VAL LEU GLU SER MET ARG CYS SEQRES 17 B 263 ASP ILE PHE LEU GLY SER HIS ALA GLY MET PHE ASP LEU SEQRES 18 B 263 LYS ASN LYS TYR VAL LEU LEU SER LYS GLY GLN ASN ASN SEQRES 19 B 263 PRO PHE VAL ASP PRO THR GLY CYS LYS ASN TYR ILE GLU SEQRES 20 B 263 GLN LYS ALA ASN ASP PHE TYR THR GLU LEU LYS LYS GLN SEQRES 21 B 263 GLU THR GLY HET ZN A 1 1 HET ZN A 2 1 HET CL A 400 1 HET SO4 A 500 5 HET SO4 A 501 5 HET SO4 A 505 5 HET SO4 A 507 5 HET GOL A 600 6 HET GOL A 601 6 HET ZN B 1 1 HET ZN B 2 1 HET CL B 401 1 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 506 5 HET GOL B 602 6 HET GOL B 603 6 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 SO4 7(O4 S 2-) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 20 HOH *317(H2 O) HELIX 1 1 LEU A 87 ALA A 90 5 3 HELIX 2 2 ASN A 91 LEU A 102 1 12 HELIX 3 3 LYS A 105 SER A 107 5 3 HELIX 4 4 HIS A 118 ALA A 123 1 6 HELIX 5 5 GLY A 124 LYS A 133 1 10 HELIX 6 6 ASP A 142 SER A 148 1 7 HELIX 7 7 ASP A 160 TYR A 164 5 5 HELIX 8 8 LYS A 238 SER A 252 1 15 HELIX 9 9 HIS A 263 PHE A 267 5 5 HELIX 10 10 ASP A 268 LYS A 278 1 11 HELIX 11 11 ASP A 286 GLY A 311 1 26 HELIX 12 12 LEU B 87 ALA B 90 5 3 HELIX 13 13 ASN B 91 LEU B 102 1 12 HELIX 14 14 LYS B 105 SER B 107 5 3 HELIX 15 15 HIS B 118 ALA B 123 1 6 HELIX 16 16 GLY B 124 LYS B 133 1 10 HELIX 17 17 ASP B 142 SER B 148 1 7 HELIX 18 18 ASP B 160 TYR B 164 5 5 HELIX 19 19 LYS B 238 SER B 252 1 15 HELIX 20 20 HIS B 263 PHE B 267 5 5 HELIX 21 21 ASP B 268 LYS B 278 1 11 HELIX 22 22 ASP B 286 GLY B 311 1 26 SHEET 1 A 7 PHE A 45 ALA A 49 0 SHEET 2 A 7 LEU A 52 TYR A 54 -1 O TYR A 54 N PHE A 45 SHEET 3 A 7 TYR A 71 THR A 75 -1 O LEU A 72 N TYR A 53 SHEET 4 A 7 GLY A 79 ILE A 83 -1 O ILE A 81 N ILE A 73 SHEET 5 A 7 THR A 109 LEU A 113 1 O LEU A 113 N LEU A 82 SHEET 6 A 7 LYS A 135 MET A 139 1 O LYS A 135 N LEU A 112 SHEET 7 A 7 LYS A 172 LEU A 174 1 O LEU A 174 N VAL A 138 SHEET 1 B 5 ARG A 179 LEU A 182 0 SHEET 2 B 5 THR A 185 LEU A 191 -1 O LEU A 187 N VAL A 180 SHEET 3 B 5 THR A 201 ASP A 209 -1 O THR A 202 N HIS A 190 SHEET 4 B 5 LYS A 212 ILE A 219 -1 O ILE A 218 N TRP A 203 SHEET 5 B 5 ILE A 258 GLY A 261 1 O ILE A 258 N VAL A 217 SHEET 1 C 7 PHE B 45 ALA B 49 0 SHEET 2 C 7 LEU B 52 TYR B 54 -1 O TYR B 54 N PHE B 45 SHEET 3 C 7 TYR B 71 THR B 75 -1 O LEU B 72 N TYR B 53 SHEET 4 C 7 GLY B 79 ILE B 83 -1 O ILE B 81 N ILE B 73 SHEET 5 C 7 THR B 109 LEU B 113 1 O ILE B 111 N LEU B 82 SHEET 6 C 7 LYS B 135 MET B 139 1 O LYS B 135 N LEU B 112 SHEET 7 C 7 LYS B 172 LEU B 174 1 O LEU B 174 N VAL B 138 SHEET 1 D 5 ARG B 179 LEU B 182 0 SHEET 2 D 5 THR B 185 LEU B 191 -1 O LEU B 187 N VAL B 180 SHEET 3 D 5 THR B 201 ASP B 209 -1 O THR B 202 N HIS B 190 SHEET 4 D 5 LYS B 212 ILE B 219 -1 O ILE B 218 N TRP B 203 SHEET 5 D 5 ILE B 258 GLY B 261 1 O ILE B 258 N VAL B 217 SSBOND 1 CYS A 256 CYS A 290 1555 1555 2.04 SSBOND 2 CYS B 256 CYS B 290 1555 1555 2.03 LINK ZN ZN A 1 NE2 HIS A 116 1555 1555 2.26 LINK ZN ZN A 1 ND1 HIS A 118 1555 1555 2.18 LINK ZN ZN A 1 NE2 HIS A 196 1555 1555 2.14 LINK ZN ZN A 1 O4 SO4 A 501 1555 1555 2.31 LINK ZN ZN A 2 OD1 ASP A 120 1555 1555 2.22 LINK ZN ZN A 2 NE2 HIS A 121 1555 1555 2.19 LINK ZN ZN A 2 NE2 HIS A 263 1555 1555 2.17 LINK ZN ZN A 2 O3 SO4 A 501 1555 1555 2.22 LINK ZN ZN A 2 O BHOH A 645 1555 1555 2.74 LINK ZN ZN B 1 NE2 HIS B 116 1555 1555 2.28 LINK ZN ZN B 1 ND1 HIS B 118 1555 1555 2.20 LINK ZN ZN B 1 NE2 HIS B 196 1555 1555 2.18 LINK ZN ZN B 1 O2 SO4 B 503 1555 1555 2.30 LINK ZN ZN B 2 OD1 ASP B 120 1555 1555 2.25 LINK ZN ZN B 2 NE2 HIS B 121 1555 1555 2.19 LINK ZN ZN B 2 NE2 HIS B 263 1555 1555 2.20 LINK ZN ZN B 2 O3 SO4 B 503 1555 1555 2.31 SITE 1 AC1 5 ZN A 2 HIS A 116 HIS A 118 HIS A 196 SITE 2 AC1 5 SO4 A 501 SITE 1 AC2 6 ZN A 1 ASP A 120 HIS A 121 HIS A 263 SITE 2 AC2 6 SO4 A 501 HOH A 645 SITE 1 AC3 5 ZN B 2 HIS B 116 HIS B 118 HIS B 196 SITE 2 AC3 5 SO4 B 503 SITE 1 AC4 6 ZN B 1 ASP B 120 HIS B 121 HIS B 263 SITE 2 AC4 6 SO4 B 503 HOH B 663 SITE 1 AC5 1 TYR A 293 SITE 1 AC6 1 TYR B 293 SITE 1 AC7 4 LYS A 100 LYS A 105 PHE A 106 SER A 107 SITE 1 AC8 8 ZN A 1 ZN A 2 HIS A 118 ASP A 120 SITE 2 AC8 8 HIS A 196 ASN A 225 HIS A 263 HOH A 645 SITE 1 AC9 4 LYS B 100 LYS B 105 PHE B 106 SER B 107 SITE 1 BC1 8 ZN B 1 ZN B 2 HIS B 118 ASP B 120 SITE 2 BC1 8 HIS B 196 ASN B 225 HIS B 263 HOH B 663 SITE 1 BC2 3 LYS A 212 TYR A 214 LYS B 291 SITE 1 BC3 3 ARG B 78 HIS B 155 HOH B 661 SITE 1 BC4 3 ARG A 78 HIS A 155 HOH A 686 SITE 1 BC5 7 MET A 137 LYS A 172 ARG A 179 VAL A 180 SITE 2 BC5 7 GLU A 181 HOH A 672 HOH A 741 SITE 1 BC6 8 THR A 188 HIS A 190 THR A 204 MET A 205 SITE 2 BC6 8 LYS A 206 GLN A 215 HOH A 647 SER B 252 SITE 1 BC7 6 MET B 137 LYS B 172 ARG B 179 VAL B 180 SITE 2 BC7 6 GLU B 181 HOH B 680 SITE 1 BC8 9 THR B 188 HIS B 190 THR B 204 MET B 205 SITE 2 BC8 9 LYS B 206 GLN B 215 MET B 254 HOH B 634 SITE 3 BC8 9 HOH B 741 CRYST1 44.761 77.430 78.499 90.00 101.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022341 0.000000 0.004627 0.00000 SCALE2 0.000000 0.012915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013009 0.00000