data_1LAQ # _entry.id 1LAQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LAQ pdb_00001laq 10.2210/pdb1laq/pdb RCSB RCSB015796 ? ? WWPDB D_1000015796 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-04-17 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-02-23 5 'Structure model' 2 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Polymer sequence' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' entity_poly 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 4 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 5 4 'Structure model' '_pdbx_nmr_software.name' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LAQ _pdbx_database_status.recvd_initial_deposition_date 2002-03-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LA8 '1la8 is the Solution structure of the DNA 13-mer hairpin CGCGGTGTCCGCG' unspecified PDB 1LAE ;1lae is the Solution structure of the DNA 13-mer hairpin CGCGGTXTCCGCG (X=PdG) containing the 1,N2-propanodeoxyguanosine adduct at the seventh position. ; unspecified PDB 1LAI '1lai is the Solution structure of the B-DNA duplex CGCGGTGTCCGCG' unspecified PDB 1LAS ;1LAS IS THE Solution structure of the B-DNA duplex CGCGGTXTCCGCG (X=PdG) containing the 1,N2-propanodeoxyguanosine adduct with the deoxyribose at C20 opposite PdG in the C3' endo conformation. ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Weisenseel, J.P.' 1 'Reddy, G.R.' 2 'Marnett, L.J.' 3 'Stone, M.P.' 4 # _citation.id primary _citation.title ;Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2. ; _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 15 _citation.page_first 127 _citation.page_last 139 _citation.year 2002 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11849038 _citation.pdbx_database_id_DOI 10.1021/tx0101090 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weisenseel, J.P.' 1 ? primary 'Reddy, G.R.' 2 ? primary 'Marnett, L.J.' 3 ? primary 'Stone, M.P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3'" 4024.636 1 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*CP*GP*GP*AP*(DNR)P*AP*CP*CP*GP*CP*G)-3'" 3963.584 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DG)(DT)(P)(DT)(DC)(DC)(DG)(DC)(DG)' CGCGGTGTCCGCG A ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DG)(DA)(DNR)(DA)(DC)(DC)(DG)(DC)(DG)' CGCGGACACCGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 P n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DC n 1 13 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DNR n 2 8 DA n 2 9 DC n 2 10 DC n 2 11 DG n 2 12 DC n 2 13 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This Synthetic DNA sequence was derived from the hisD3052 gene of salmonella typhimurium.' 2 1 sample ? ? ? ? ? 'This Synthetic DNA sequence was derived from the hisD3052 gene of salmonella typhimurium.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DNR 'DNA linking' n ;2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE ; ? 'C9 H15 N3 O7 P 1' 308.205 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 P 'DNA linking' n ;2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE ; ? 'C13 H18 N5 O7 P' 387.285 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 P 7 7 7 P P A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DG 13 13 13 DG G A . n B 2 1 DC 1 14 14 DC C B . n B 2 2 DG 2 15 15 DG G B . n B 2 3 DC 3 16 16 DC C B . n B 2 4 DG 4 17 17 DG G B . n B 2 5 DG 5 18 18 DG G B . n B 2 6 DA 6 19 19 DA A B . n B 2 7 DNR 7 20 20 DNR DNR B . n B 2 8 DA 8 21 21 DA A B . n B 2 9 DC 9 22 22 DC C B . n B 2 10 DC 10 23 23 DC C B . n B 2 11 DG 11 24 24 DG G B . n B 2 12 DC 12 25 25 DC C B . n B 2 13 DG 13 26 26 DG G B . n # _exptl.entry_id 1LAQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1LAQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1LAQ _struct.title ;Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C2' Endo Conformation. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1LAQ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, B-type, propanodeoxyguanosine' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1LAQ 1LAQ ? ? ? 2 2 PDB 1LAQ 1LAQ ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LAQ A 1 ? 13 ? 1LAQ 1 ? 13 ? 1 13 2 2 1LAQ B 1 ? 13 ? 1LAQ 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 6 "O3'" ? ? ? 1_555 A P 7 P ? ? A DT 6 A P 7 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A P 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A P 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? B DA 6 "O3'" ? ? ? 1_555 B DNR 7 P ? ? B DA 19 B DNR 20 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale4 covale both ? B DNR 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B DNR 20 B DA 21 1_555 ? ? ? ? ? ? ? 1.614 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 5 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 5 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 5 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 6 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 6 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A P 7 O6 ? ? ? 1_555 B DNR 7 N4 ? ? A P 7 B DNR 20 1_555 ? ? ? ? ? ? 'P-DNR PAIR' ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 8 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 8 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.86 108.30 2.56 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.80 108.30 2.50 0.30 N 3 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 117.74 113.10 4.64 0.50 N 4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.28 108.30 2.98 0.30 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.78 108.30 2.48 0.30 N 6 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 117.66 113.10 4.56 0.50 N 7 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.79 106.40 -2.61 0.40 N 8 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.63 108.30 3.33 0.30 N 9 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.64 113.10 4.54 0.50 N 10 1 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.80 106.40 -2.60 0.40 N 11 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.23 108.30 2.93 0.30 N 12 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.06 108.30 2.76 0.30 N 13 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.30 108.30 3.00 0.30 N 14 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.33 108.30 3.03 0.30 N 15 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.65 108.30 2.35 0.30 N 16 1 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 117.78 113.10 4.68 0.50 N 17 1 C8 A DG 11 ? ? N9 A DG 11 ? ? C4 A DG 11 ? ? 103.88 106.40 -2.52 0.40 N 18 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.24 108.30 2.94 0.30 N 19 1 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.03 108.30 2.73 0.30 N 20 1 N7 A DG 13 ? ? C8 A DG 13 ? ? N9 A DG 13 ? ? 117.60 113.10 4.50 0.50 N 21 1 C8 A DG 13 ? ? N9 A DG 13 ? ? C4 A DG 13 ? ? 103.46 106.40 -2.94 0.40 N 22 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.26 108.30 2.96 0.30 N 23 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.64 108.30 2.34 0.30 N 24 1 N7 B DG 15 ? ? C8 B DG 15 ? ? N9 B DG 15 ? ? 117.75 113.10 4.65 0.50 N 25 1 C8 B DG 15 ? ? N9 B DG 15 ? ? C4 B DG 15 ? ? 103.86 106.40 -2.54 0.40 N 26 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.40 108.30 3.10 0.30 N 27 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.48 108.30 2.18 0.30 N 28 1 N7 B DG 17 ? ? C8 B DG 17 ? ? N9 B DG 17 ? ? 117.75 113.10 4.65 0.50 N 29 1 C8 B DG 17 ? ? N9 B DG 17 ? ? C4 B DG 17 ? ? 103.77 106.40 -2.63 0.40 N 30 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.03 108.30 2.73 0.30 N 31 1 N7 B DG 18 ? ? C8 B DG 18 ? ? N9 B DG 18 ? ? 117.58 113.10 4.48 0.50 N 32 1 C8 B DG 18 ? ? N9 B DG 18 ? ? C4 B DG 18 ? ? 103.77 106.40 -2.63 0.40 N 33 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 111.25 108.30 2.95 0.30 N 34 1 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.47 113.80 3.67 0.50 N 35 1 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 111.18 108.30 2.88 0.30 N 36 1 N7 B DA 21 ? ? C8 B DA 21 ? ? N9 B DA 21 ? ? 117.71 113.80 3.91 0.50 N 37 1 "O4'" B DC 22 ? ? "C1'" B DC 22 ? ? N1 B DC 22 ? ? 111.70 108.30 3.40 0.30 N 38 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.33 108.30 3.03 0.30 N 39 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.70 108.30 2.40 0.30 N 40 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 117.76 113.10 4.66 0.50 N 41 1 C8 B DG 24 ? ? N9 B DG 24 ? ? C4 B DG 24 ? ? 103.99 106.40 -2.41 0.40 N 42 1 "O4'" B DC 25 ? ? "C1'" B DC 25 ? ? N1 B DC 25 ? ? 111.47 108.30 3.17 0.30 N 43 1 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 111.03 108.30 2.73 0.30 N 44 1 N7 B DG 26 ? ? C8 B DG 26 ? ? N9 B DG 26 ? ? 117.63 113.10 4.53 0.50 N 45 1 C8 B DG 26 ? ? N9 B DG 26 ? ? C4 B DG 26 ? ? 103.58 106.40 -2.82 0.40 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A P 7 A P 7 ? DG ? 2 B DNR 7 B DNR 20 ? DC ? # _pdbx_nmr_ensemble.entry_id 1LAQ _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1LAQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.8 mM DNA strand, 10 mM sodium phosphate, 100 mM NaCl, 50 uM EDTA' D2O 2 '1.8 mM DNA strand, 1 mM sodium phosphate, 100 mM NaCl, 50 uM EDTA' H2O/D2O # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 ambient 5.2 '100 mM NaCl' ? K 2 278 ambient 5.2 '100 mM NaCl' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY 3 1 1 '31P-1H COSY' 4 2 2 '2D NOESY' # _pdbx_nmr_refine.entry_id 1LAQ _pdbx_nmr_refine.method 'Molecular dynamics using a simulated annealing protocol.' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal UXNMR 3.0 collection Bruker 1 Felix '97.0, 2000' 'data analysis' 'Hare, D.' 2 MARDIGRAS 3.2 'iterative matrix relaxation' 'Borgias & James' 3 X-PLOR 3.8 refinement 'Brunger, A.' 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DNR P P N N 108 DNR OP1 O N N 109 DNR OP2 O N N 110 DNR "O5'" O N N 111 DNR "C5'" C N N 112 DNR "C4'" C N R 113 DNR "O4'" O N N 114 DNR "C1'" C N R 115 DNR N1 N N N 116 DNR C6 C N N 117 DNR C2 C N N 118 DNR O2 O N N 119 DNR N3 N N N 120 DNR C4 C N N 121 DNR N4 N N N 122 DNR C5 C N N 123 DNR "C2'" C N N 124 DNR "C3'" C N S 125 DNR "O3'" O N N 126 DNR OP3 O N N 127 DNR HOP2 H N N 128 DNR "H5'" H N N 129 DNR "H5''" H N N 130 DNR "H4'" H N N 131 DNR "H1'" H N N 132 DNR H6 H N N 133 DNR HN3 H N N 134 DNR H41 H N N 135 DNR H42 H N N 136 DNR H5 H N N 137 DNR "H2'" H N N 138 DNR "H2''" H N N 139 DNR "H3'" H N N 140 DNR "HO3'" H N N 141 DNR HOP3 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 P P P N N 179 P OP1 O N N 180 P OP2 O N N 181 P OP3 O N N 182 P "O5'" O N N 183 P "C5'" C N N 184 P "C4'" C N R 185 P "O4'" O N N 186 P "C3'" C N S 187 P "O3'" O N N 188 P "C2'" C N N 189 P "C1'" C N R 190 P N9 N Y N 191 P C8 C Y N 192 P N7 N Y N 193 P C5 C Y N 194 P C6 C N N 195 P O6 O N N 196 P N1 N N N 197 P C2 C N N 198 P N2 N N N 199 P N3 N N N 200 P C4 C Y N 201 P C6A C N N 202 P C7A C N N 203 P C8A C N N 204 P HOP2 H N N 205 P HOP3 H N N 206 P "H5'" H N N 207 P "H5''" H N N 208 P "H4'" H N N 209 P "H3'" H N N 210 P "HO3'" H N N 211 P "H2'" H N N 212 P "H2''" H N N 213 P "H1'" H N N 214 P H8 H N N 215 P H2 H N N 216 P H6A1 H N N 217 P H6A2 H N N 218 P H7A1 H N N 219 P H7A2 H N N 220 P H8A1 H N N 221 P H8A2 H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DNR P OP1 doub N N 113 DNR P OP2 sing N N 114 DNR P "O5'" sing N N 115 DNR P OP3 sing N N 116 DNR OP2 HOP2 sing N N 117 DNR "O5'" "C5'" sing N N 118 DNR "C5'" "C4'" sing N N 119 DNR "C5'" "H5'" sing N N 120 DNR "C5'" "H5''" sing N N 121 DNR "C4'" "O4'" sing N N 122 DNR "C4'" "C3'" sing N N 123 DNR "C4'" "H4'" sing N N 124 DNR "O4'" "C1'" sing N N 125 DNR "C1'" N1 sing N N 126 DNR "C1'" "C2'" sing N N 127 DNR "C1'" "H1'" sing N N 128 DNR N1 C6 sing N N 129 DNR N1 C2 sing N N 130 DNR C6 C5 doub N N 131 DNR C6 H6 sing N N 132 DNR C2 O2 doub N N 133 DNR C2 N3 sing N N 134 DNR N3 C4 doub N N 135 DNR N3 HN3 sing N N 136 DNR C4 N4 sing N N 137 DNR C4 C5 sing N N 138 DNR N4 H41 sing N N 139 DNR N4 H42 sing N N 140 DNR C5 H5 sing N N 141 DNR "C2'" "C3'" sing N N 142 DNR "C2'" "H2'" sing N N 143 DNR "C2'" "H2''" sing N N 144 DNR "C3'" "O3'" sing N N 145 DNR "C3'" "H3'" sing N N 146 DNR "O3'" "HO3'" sing N N 147 DNR OP3 HOP3 sing N N 148 DT OP3 P sing N N 149 DT OP3 HOP3 sing N N 150 DT P OP1 doub N N 151 DT P OP2 sing N N 152 DT P "O5'" sing N N 153 DT OP2 HOP2 sing N N 154 DT "O5'" "C5'" sing N N 155 DT "C5'" "C4'" sing N N 156 DT "C5'" "H5'" sing N N 157 DT "C5'" "H5''" sing N N 158 DT "C4'" "O4'" sing N N 159 DT "C4'" "C3'" sing N N 160 DT "C4'" "H4'" sing N N 161 DT "O4'" "C1'" sing N N 162 DT "C3'" "O3'" sing N N 163 DT "C3'" "C2'" sing N N 164 DT "C3'" "H3'" sing N N 165 DT "O3'" "HO3'" sing N N 166 DT "C2'" "C1'" sing N N 167 DT "C2'" "H2'" sing N N 168 DT "C2'" "H2''" sing N N 169 DT "C1'" N1 sing N N 170 DT "C1'" "H1'" sing N N 171 DT N1 C2 sing N N 172 DT N1 C6 sing N N 173 DT C2 O2 doub N N 174 DT C2 N3 sing N N 175 DT N3 C4 sing N N 176 DT N3 H3 sing N N 177 DT C4 O4 doub N N 178 DT C4 C5 sing N N 179 DT C5 C7 sing N N 180 DT C5 C6 doub N N 181 DT C7 H71 sing N N 182 DT C7 H72 sing N N 183 DT C7 H73 sing N N 184 DT C6 H6 sing N N 185 P P OP1 doub N N 186 P P OP2 sing N N 187 P P OP3 sing N N 188 P P "O5'" sing N N 189 P OP2 HOP2 sing N N 190 P OP3 HOP3 sing N N 191 P "O5'" "C5'" sing N N 192 P "C5'" "C4'" sing N N 193 P "C5'" "H5'" sing N N 194 P "C5'" "H5''" sing N N 195 P "C4'" "O4'" sing N N 196 P "C4'" "C3'" sing N N 197 P "C4'" "H4'" sing N N 198 P "O4'" "C1'" sing N N 199 P "C3'" "O3'" sing N N 200 P "C3'" "C2'" sing N N 201 P "C3'" "H3'" sing N N 202 P "O3'" "HO3'" sing N N 203 P "C2'" "C1'" sing N N 204 P "C2'" "H2'" sing N N 205 P "C2'" "H2''" sing N N 206 P "C1'" N9 sing N N 207 P "C1'" "H1'" sing N N 208 P N9 C8 sing Y N 209 P N9 C4 sing Y N 210 P C8 N7 doub Y N 211 P C8 H8 sing N N 212 P N7 C5 sing Y N 213 P C5 C6 sing N N 214 P C5 C4 doub Y N 215 P C6 O6 doub N N 216 P C6 N1 sing N N 217 P N1 C2 sing N N 218 P N1 C8A sing N N 219 P C2 N2 sing N N 220 P C2 N3 doub N N 221 P N2 C6A sing N N 222 P N2 H2 sing N N 223 P N3 C4 sing N N 224 P C6A C7A sing N N 225 P C6A H6A1 sing N N 226 P C6A H6A2 sing N N 227 P C7A C8A sing N N 228 P C7A H7A1 sing N N 229 P C7A H7A2 sing N N 230 P C8A H8A1 sing N N 231 P C8A H8A2 sing N N 232 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LAQ 'double helix' 1LAQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.100 -0.031 0.723 -30.048 -1.048 -3.491 1 A_DC1:DG26_B A 1 ? B 26 ? 19 1 1 A DG 2 1_555 B DC 12 1_555 -0.136 -0.120 0.052 -13.398 -4.093 -1.865 2 A_DG2:DC25_B A 2 ? B 25 ? 19 1 1 A DC 3 1_555 B DG 11 1_555 0.144 -0.109 -0.023 2.805 -3.186 -2.765 3 A_DC3:DG24_B A 3 ? B 24 ? 19 1 1 A DG 4 1_555 B DC 10 1_555 -0.137 -0.090 0.240 12.524 -2.128 -2.871 4 A_DG4:DC23_B A 4 ? B 23 ? 19 1 1 A DG 5 1_555 B DC 9 1_555 -0.172 -0.045 0.227 20.089 -4.374 -0.027 5 A_DG5:DC22_B A 5 ? B 22 ? 19 1 1 A DT 6 1_555 B DA 8 1_555 0.099 -0.160 -0.504 22.926 -22.716 3.193 6 A_DT6:DA21_B A 6 ? B 21 ? 20 1 1 A P 7 1_555 B DNR 7 1_555 1.083 -3.654 -1.328 21.889 3.309 83.671 7 A_P7:DNR20_B A 7 ? B 20 ? ? ? 1 A DT 8 1_555 B DA 6 1_555 -0.101 -0.139 -0.116 1.073 -9.660 3.276 8 A_DT8:DA19_B A 8 ? B 19 ? 20 1 1 A DC 9 1_555 B DG 5 1_555 0.192 -0.121 -0.390 12.980 -21.400 1.426 9 A_DC9:DG18_B A 9 ? B 18 ? 19 1 1 A DC 10 1_555 B DG 4 1_555 0.164 -0.104 0.004 5.087 -17.385 -1.294 10 A_DC10:DG17_B A 10 ? B 17 ? 19 1 1 A DG 11 1_555 B DC 3 1_555 -0.153 -0.101 0.402 6.953 -6.498 -2.033 11 A_DG11:DC16_B A 11 ? B 16 ? 19 1 1 A DC 12 1_555 B DG 2 1_555 0.140 -0.121 0.210 12.355 -2.371 -3.014 12 A_DC12:DG15_B A 12 ? B 15 ? 19 1 1 A DG 13 1_555 B DC 1 1_555 -0.008 -0.088 0.711 26.636 -8.039 -3.938 13 A_DG13:DC14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DG 2 1_555 B DC 12 1_555 -0.112 0.168 2.876 2.308 -4.021 38.469 0.684 0.417 2.834 -6.076 -3.488 38.737 1 AA_DC1DG2:DC25DG26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DG 2 1_555 B DC 12 1_555 A DC 3 1_555 B DG 11 1_555 -0.078 0.819 2.846 -0.002 -3.325 36.343 1.703 0.125 2.763 -5.316 0.004 36.490 2 AA_DG2DC3:DG24DC25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DC 3 1_555 B DG 11 1_555 A DG 4 1_555 B DC 10 1_555 0.487 -0.256 2.857 0.925 7.029 35.118 -1.294 -0.677 2.767 11.504 -1.515 35.804 3 AA_DC3DG4:DC23DG24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DG 4 1_555 B DC 10 1_555 A DG 5 1_555 B DC 9 1_555 0.307 0.120 2.998 1.053 -0.219 37.388 0.213 -0.351 3.005 -0.342 -1.643 37.403 4 AA_DG4DG5:DC22DC23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DG 5 1_555 B DC 9 1_555 A DT 6 1_555 B DA 8 1_555 0.484 0.479 3.085 9.375 -4.667 38.455 1.220 0.325 3.040 -6.931 -13.921 39.803 5 AA_DG5DT6:DA21DC22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DT 6 1_555 B DA 8 1_555 A P 7 1_555 B DNR 7 1_555 -2.825 3.907 -1.351 170.145 5.587 -107.421 -1.951 -1.553 0.501 -2.825 86.016 -174.226 6 AA_DT6P7:DNR20DA21_BB A 6 ? B 21 ? A 7 ? B 20 ? 1 A P 7 1_555 B DNR 7 1_555 A DT 8 1_555 B DA 6 1_555 1.216 3.208 0.332 -135.366 106.369 -103.028 -1.601 0.615 -0.378 -53.710 -68.351 -175.122 7 AA_P7DT8:DA19DNR20_BB A 7 ? B 20 ? A 8 ? B 19 ? 1 A DT 8 1_555 B DA 6 1_555 A DC 9 1_555 B DG 5 1_555 -0.344 0.625 2.832 1.110 -1.971 38.333 1.161 0.642 2.787 -2.999 -1.688 38.398 8 AA_DT8DC9:DG18DA19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DC 9 1_555 B DG 5 1_555 A DC 10 1_555 B DG 4 1_555 -0.578 0.317 3.480 -1.826 2.325 38.507 0.172 0.633 3.515 3.519 2.763 38.616 9 AA_DC9DC10:DG17DG18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DC 10 1_555 B DG 4 1_555 A DG 11 1_555 B DC 3 1_555 0.271 0.379 3.221 -1.535 3.261 38.449 0.176 -0.597 3.229 4.939 2.325 38.611 10 AA_DC10DG11:DC16DG17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DG 11 1_555 B DC 3 1_555 A DC 12 1_555 B DG 2 1_555 -0.166 0.566 3.226 -0.796 -9.147 38.314 1.891 0.155 3.020 -13.697 1.192 39.358 11 AA_DG11DC12:DG15DC16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DC 12 1_555 B DG 2 1_555 A DG 13 1_555 B DC 1 1_555 0.335 0.419 2.853 1.042 -2.085 39.585 0.829 -0.387 2.836 -3.075 -1.537 39.651 12 AA_DC12DG13:DC14DG15_BB A 12 ? B 15 ? A 13 ? B 14 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1LAQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_