HEADER LIGASE 08-APR-02 1LDK TITLE STRUCTURE OF THE CUL1-RBX1-SKP1-F BOXSKP2 SCF UBIQUITIN LIGASE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CULLIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 15-410; COMPND 5 SYNONYM: CUL1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CULLIN HOMOLOG; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 411-776; COMPND 11 SYNONYM: CUL1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RING-BOX PROTEIN 1; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: RBX1; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: CYCLIN A/CDK2-ASSOCIATED PROTEIN P19; COMPND 20 CHAIN: D; COMPND 21 SYNONYM: SKP1, RNA POLYMERASE II ELONGATION FACTOR-LIKE PROTEIN, COMPND 22 ORGAN OF CORTI PROTEIN 2, OCP-II PROTEIN, TRANSCRIPTION ELONGATION COMPND 23 FACTOR B, SIII; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: SKP2-LIKE PROTEIN TYPE GAMMA; COMPND 27 CHAIN: E; COMPND 28 SYNONYM: SKP2-FBOX; COMPND 29 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX4T1; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PGEX4T1; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PGEX4T1; SOURCE 33 MOL_ID: 5; SOURCE 34 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 35 ORGANISM_COMMON: HUMAN; SOURCE 36 ORGANISM_TAXID: 9606; SOURCE 37 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS SCF, CULLIN, RBX1, ROC1, HRT1, SKP1, SKP2, F-BOX, FBOX, UBIQUITIN, KEYWDS 2 UBIQUITINATION, E3 LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHENG,B.A.SCHULMAN,L.SONG,J.J.MILLER,P.D.JEFFREY,P.WANG,C.CHU, AUTHOR 2 D.M.KOEPP,S.J.ELLEDGE,M.PAGANO,R.C.CONAWAY,J.W.CONAWAY,J.W.HARPER, AUTHOR 3 N.P.PAVLETICH REVDAT 4 20-NOV-24 1LDK 1 REMARK REVDAT 3 20-NOV-19 1LDK 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1LDK 1 VERSN REVDAT 1 08-MAY-02 1LDK 0 JRNL AUTH N.ZHENG,B.A.SCHULMAN,L.SONG,J.J.MILLER,P.D.JEFFREY,P.WANG, JRNL AUTH 2 C.CHU,D.M.KOEPP,S.J.ELLEDGE,M.PAGANO,R.C.CONAWAY, JRNL AUTH 3 J.W.CONAWAY,J.W.HARPER,N.P.PAVLETICH JRNL TITL STRUCTURE OF THE CUL1-RBX1-SKP1-F BOXSKP2 SCF UBIQUITIN JRNL TITL 2 LIGASE COMPLEX. JRNL REF NATURE V. 416 703 2002 JRNL REFN ISSN 0028-0836 JRNL PMID 11961546 JRNL DOI 10.1038/416703A REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 170; NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; CHESS REMARK 200 BEAMLINE : A1; F1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.928; 0.943 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30847 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 109.68900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.26450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 109.68900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.26450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 99800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 219.37800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 56 REMARK 465 HIS A 57 REMARK 465 GLN A 58 REMARK 465 SER A 59 REMARK 465 ASN A 60 REMARK 465 GLN A 61 REMARK 465 ALA A 62 REMARK 465 ARG A 63 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 VAL A 67 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 SER A 70 REMARK 465 LYS A 71 REMARK 465 SER A 72 REMARK 465 LYS A 73 REMARK 465 LYS A 74 REMARK 465 GLY A 75 REMARK 465 GLN A 76 REMARK 465 THR A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 ALA A 81 REMARK 465 ASP A 150 REMARK 465 GLU A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 ASP A 217 REMARK 465 ALA A 218 REMARK 465 PHE A 219 REMARK 465 ALA A 220 REMARK 465 LYS A 221 REMARK 465 GLY A 222 REMARK 465 PRO A 223 REMARK 465 THR A 224 REMARK 465 GLY C 1107 REMARK 465 HIS C 1108 REMARK 465 PRO D 2069 REMARK 465 PRO D 2070 REMARK 465 PRO D 2071 REMARK 465 PRO D 2072 REMARK 465 GLU D 2073 REMARK 465 ASP D 2074 REMARK 465 ASP D 2075 REMARK 465 GLU D 2076 REMARK 465 ASN D 2077 REMARK 465 LYS D 2078 REMARK 465 GLU D 2079 REMARK 465 LYS D 2080 REMARK 465 ARG D 2081 REMARK 465 THR D 2082 REMARK 465 ASP D 2083 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO D2002 CG CD REMARK 470 ASP D2084 CG OD1 OD2 REMARK 470 ASP E3110 CG OD1 OD2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP C 1036 REMARK 475 ILE C 1037 REMARK 475 VAL C 1038 REMARK 475 VAL C 1039 REMARK 475 ASP C 1040 REMARK 475 ASN C 1041 REMARK 475 CYS C 1042 REMARK 475 ALA C 1043 REMARK 475 ILE C 1044 REMARK 475 CYS C 1045 REMARK 475 ARG C 1046 REMARK 475 ASN C 1047 REMARK 475 HIS C 1048 REMARK 475 ILE C 1049 REMARK 475 MET C 1050 REMARK 475 ASP C 1051 REMARK 475 LEU C 1052 REMARK 475 CYS C 1053 REMARK 475 ILE C 1054 REMARK 475 GLU C 1055 REMARK 475 CYS C 1056 REMARK 475 GLN C 1057 REMARK 475 ALA C 1058 REMARK 475 ASN C 1059 REMARK 475 GLN C 1060 REMARK 475 ALA C 1061 REMARK 475 SER C 1062 REMARK 475 ALA C 1063 REMARK 475 THR C 1064 REMARK 475 SER C 1065 REMARK 475 GLU C 1066 REMARK 475 GLU C 1067 REMARK 475 CYS C 1068 REMARK 475 THR C 1069 REMARK 475 VAL C 1070 REMARK 475 ALA C 1071 REMARK 475 TRP C 1072 REMARK 475 GLY C 1073 REMARK 475 VAL C 1074 REMARK 475 CYS C 1075 REMARK 475 ASN C 1076 REMARK 475 HIS C 1077 REMARK 475 ALA C 1078 REMARK 475 PHE C 1079 REMARK 475 HIS C 1080 REMARK 475 PHE C 1081 REMARK 475 HIS C 1082 REMARK 475 CYS C 1083 REMARK 475 ILE C 1084 REMARK 475 SER C 1085 REMARK 475 ARG C 1086 REMARK 475 TRP C 1087 REMARK 475 LEU C 1088 REMARK 475 LYS C 1089 REMARK 475 THR C 1090 REMARK 475 ARG C 1091 REMARK 475 GLN C 1092 REMARK 475 VAL C 1093 REMARK 475 CYS C 1094 REMARK 475 PRO C 1095 REMARK 475 LEU C 1096 REMARK 475 ASN C 1098 REMARK 475 ARG C 1099 REMARK 475 GLU C 1100 REMARK 475 TRP C 1101 REMARK 475 GLU C 1102 REMARK 475 PHE C 1103 REMARK 475 GLN C 1104 REMARK 475 LYS C 1105 REMARK 475 TYR C 1106 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP C 1097 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 168 OE2 GLU A 215 0.99 REMARK 500 CE1 HIS C 1077 ZN ZN C 4002 1.33 REMARK 500 CG1 VAL A 145 O TYR A 157 1.38 REMARK 500 O PRO B 687 O MET B 688 1.42 REMARK 500 CG2 THR A 409 O SER B 414 1.44 REMARK 500 O GLY A 16 CG1 ILE A 20 1.46 REMARK 500 NH2 ARG A 168 CD GLU A 215 1.53 REMARK 500 O GLN A 30 O THR A 33 1.62 REMARK 500 O PRO D 2038 CD PRO D 2040 1.63 REMARK 500 O PHE B 569 OG SER B 572 1.66 REMARK 500 O LEU B 474 O HIS B 476 1.71 REMARK 500 O ARG A 142 NH2 ARG A 146 1.71 REMARK 500 OD2 ASP E 3145 O GLU E 3146 1.71 REMARK 500 O GLY B 576 N ASP C 1036 1.73 REMARK 500 C PRO B 687 O MET B 688 1.76 REMARK 500 O GLU B 660 O VAL B 661 1.76 REMARK 500 O ASN A 404 OD1 ASN A 405 1.76 REMARK 500 CD2 LEU B 555 CD2 LEU B 559 1.77 REMARK 500 CB GLN B 638 SD MET B 688 1.80 REMARK 500 O PHE A 402 ND2 ASN A 406 1.81 REMARK 500 O GLU A 297 N LEU A 300 1.86 REMARK 500 CG2 THR A 409 CA SER B 415 1.88 REMARK 500 O PHE B 566 N PHE B 569 1.89 REMARK 500 O GLY B 576 CA ASP C 1036 1.90 REMARK 500 CG2 THR A 409 C SER B 414 1.96 REMARK 500 O LEU A 211 CD2 LEU A 213 1.96 REMARK 500 NH2 ARG A 168 CG GLU A 215 1.99 REMARK 500 OE1 GLN B 638 CE MET B 688 1.99 REMARK 500 CZ ARG A 168 OE2 GLU A 215 1.99 REMARK 500 O ARG A 142 NE ARG A 146 2.00 REMARK 500 CB LYS B 578 O ASP C 1036 2.01 REMARK 500 O THR D 2119 OG1 THR D 2122 2.01 REMARK 500 O GLY A 107 CG LEU A 110 2.02 REMARK 500 C THR A 409 O SER B 414 2.03 REMARK 500 O SER A 231 OE1 GLN A 235 2.04 REMARK 500 C LEU B 474 O HIS B 476 2.04 REMARK 500 O LYS A 177 OD1 ASN A 181 2.06 REMARK 500 O GLU A 297 CB LEU A 300 2.07 REMARK 500 O GLY B 576 CB ASP C 1036 2.09 REMARK 500 O ARG A 142 CZ ARG A 146 2.09 REMARK 500 O GLY A 16 CB ILE A 20 2.10 REMARK 500 O VAL A 209 N GLY A 212 2.12 REMARK 500 O SER B 433 O LYS B 435 2.14 REMARK 500 CG2 THR A 409 N SER B 415 2.15 REMARK 500 O LEU B 644 O SER B 646 2.15 REMARK 500 CA THR A 409 O SER B 414 2.15 REMARK 500 CB THR A 409 O SER B 414 2.16 REMARK 500 O ASN A 134 N ALA A 138 2.16 REMARK 500 O LEU A 211 ND2 ASN A 214 2.18 REMARK 500 OG SER B 586 O ASN C 1028 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 199 OG1 THR A 305 3546 1.76 REMARK 500 OD1 ASN B 597 OD2 ASP B 659 3547 2.00 REMARK 500 O SER B 572 CB ALA C 1061 1545 2.04 REMARK 500 OE1 GLU B 660 CB LYS B 676 3557 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 135 N GLY A 135 CA 0.163 REMARK 500 ILE A 196 CG1 ILE A 196 CD1 0.419 REMARK 500 GLU A 210 N GLU A 210 CA 0.171 REMARK 500 ASP A 216 C ASP A 216 O -0.126 REMARK 500 ILE A 344 N ILE A 344 CA 0.137 REMARK 500 VAL A 367 N VAL A 367 CA 0.169 REMARK 500 CYS B 426 N CYS B 426 CA 0.138 REMARK 500 GLU B 443 C ASP B 444 N 0.195 REMARK 500 PHE B 453 N PHE B 453 CA 0.193 REMARK 500 ILE B 489 N ILE B 489 CA 0.191 REMARK 500 LYS B 523 N LYS B 523 CA 0.137 REMARK 500 GLU D2102 N GLU D2102 CA 0.365 REMARK 500 LEU D2110 N LEU D2110 CA 0.133 REMARK 500 TRP E3149 C TRP E3149 OXT 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 16 N - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 THR A 33 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 ASP A 112 CA - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP A 112 O - C - N ANGL. DEV. = -26.8 DEGREES REMARK 500 GLU A 113 C - N - CA ANGL. DEV. = 26.2 DEGREES REMARK 500 ARG A 127 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY A 135 C - N - CA ANGL. DEV. = -13.7 DEGREES REMARK 500 GLY A 135 N - CA - C ANGL. DEV. = -23.9 DEGREES REMARK 500 PRO A 174 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 GLU A 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 THR A 195 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ILE A 196 CB - CG1 - CD1 ANGL. DEV. = -27.0 DEGREES REMARK 500 LEU A 213 C - N - CA ANGL. DEV. = -29.5 DEGREES REMARK 500 LEU A 213 CA - C - O ANGL. DEV. = 18.9 DEGREES REMARK 500 LEU A 213 CA - C - N ANGL. DEV. = -31.4 DEGREES REMARK 500 LEU A 213 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 ASN A 214 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 PRO A 256 CA - N - CD ANGL. DEV. = -12.4 DEGREES REMARK 500 ILE A 296 CB - CG1 - CD1 ANGL. DEV. = -22.6 DEGREES REMARK 500 ILE A 344 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 VAL A 367 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG B 424 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO B 437 C - N - CD ANGL. DEV. = -19.0 DEGREES REMARK 500 PRO B 437 CA - N - CD ANGL. DEV. = -11.0 DEGREES REMARK 500 HIS B 476 N - CA - C ANGL. DEV. = -23.4 DEGREES REMARK 500 SER B 479 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ALA B 495 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE B 521 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 LYS B 523 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 PRO B 556 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PHE B 566 CB - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 PHE B 566 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP B 618 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 ASP B 634 C - N - CA ANGL. DEV. = -17.0 DEGREES REMARK 500 SER B 646 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO B 665 C - N - CD ANGL. DEV. = -23.9 DEGREES REMARK 500 MET B 688 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS B 701 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP B 706 N - CA - CB ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP B 706 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 GLU C1023 N - CA - CB ANGL. DEV. = -21.9 DEGREES REMARK 500 PRO D2002 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 PRO D2040 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 GLU D2102 C - N - CA ANGL. DEV. = -21.0 DEGREES REMARK 500 GLU D2102 N - CA - CB ANGL. DEV. = -18.9 DEGREES REMARK 500 GLU D2102 N - CA - C ANGL. DEV. = 28.6 DEGREES REMARK 500 LEU D2110 N - CA - C ANGL. DEV. = -25.6 DEGREES REMARK 500 PRO E3113 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO E3113 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU E3146 N - CA - C ANGL. DEV. = -31.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 65.47 -104.94 REMARK 500 GLN A 35 8.39 -66.34 REMARK 500 SER A 36 86.68 57.56 REMARK 500 LYS A 39 -9.98 -50.11 REMARK 500 THR A 54 92.07 -168.53 REMARK 500 PHE A 83 -97.02 -57.78 REMARK 500 VAL A 84 71.25 34.50 REMARK 500 LEU A 86 -78.45 -39.61 REMARK 500 LEU A 103 2.40 -164.02 REMARK 500 ASP A 109 -1.12 80.23 REMARK 500 GLU A 113 -60.70 -127.64 REMARK 500 TYR A 119 -71.24 -85.76 REMARK 500 HIS A 143 -75.86 -128.62 REMARK 500 GLU A 148 -15.51 -148.36 REMARK 500 TYR A 157 -57.89 -145.51 REMARK 500 GLU A 158 -158.93 -129.58 REMARK 500 ILE A 159 -65.31 -131.60 REMARK 500 ASP A 169 19.03 -166.09 REMARK 500 LEU A 171 -69.77 -122.13 REMARK 500 PRO A 174 -90.21 -59.38 REMARK 500 ASN A 176 -96.80 -7.15 REMARK 500 ARG A 191 -159.45 -88.83 REMARK 500 ASN A 192 12.71 -53.71 REMARK 500 ASN A 197 -8.77 -59.80 REMARK 500 GLU A 215 136.22 -32.36 REMARK 500 THR A 226 -70.64 -96.88 REMARK 500 VAL A 227 -74.34 -38.91 REMARK 500 TYR A 228 -32.41 -38.08 REMARK 500 THR A 258 39.54 -70.13 REMARK 500 GLU A 259 -22.57 -158.85 REMARK 500 TYR A 278 -6.97 -151.41 REMARK 500 THR A 283 37.77 -84.69 REMARK 500 LYS A 298 -28.83 -33.56 REMARK 500 ALA A 313 -159.13 -84.64 REMARK 500 LYS A 315 60.94 -65.14 REMARK 500 GLU A 317 -39.81 -29.95 REMARK 500 SER A 327 -32.48 -30.73 REMARK 500 ASP A 331 23.93 40.62 REMARK 500 GLU A 357 -63.29 -148.29 REMARK 500 ASN A 361 35.86 -73.89 REMARK 500 PHE A 402 -35.42 -157.02 REMARK 500 ASN A 405 34.71 -169.84 REMARK 500 THR A 409 -74.62 -110.21 REMARK 500 LYS B 431 145.43 -16.99 REMARK 500 LYS B 435 -130.85 -126.08 REMARK 500 GLU B 439 -76.51 -32.99 REMARK 500 LYS B 454 21.70 -55.04 REMARK 500 LYS B 459 8.11 -55.81 REMARK 500 ALA B 495 10.66 50.50 REMARK 500 LEU B 504 -77.75 -35.79 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 112 GLU A 113 123.20 REMARK 500 VAL B 452 PHE B 453 -148.85 REMARK 500 MET B 488 ILE B 489 149.44 REMARK 500 PHE D 2101 GLU D 2102 143.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 323 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 111 -11.08 REMARK 500 ASP A 112 28.79 REMARK 500 GLU A 113 -12.00 REMARK 500 GLU B 443 11.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1042 SG REMARK 620 2 CYS C1045 SG 92.5 REMARK 620 3 HIS C1080 ND1 77.5 88.4 REMARK 620 4 CYS C1083 SG 52.7 128.1 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C4003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1053 SG REMARK 620 2 CYS C1056 SG 86.5 REMARK 620 3 CYS C1068 SG 110.3 113.0 REMARK 620 4 HIS C1082 ND1 115.0 114.1 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1075 SG REMARK 620 2 HIS C1077 ND1 83.7 REMARK 620 3 HIS C1077 NE2 124.9 55.7 REMARK 620 4 CYS C1094 SG 103.3 115.1 125.9 REMARK 620 5 ASP C1097 OD1 76.3 146.1 116.2 96.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 4002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LDD RELATED DB: PDB REMARK 900 STRUCTURE OF THE CUL1-RBX1-SKP1-F BOXSKP2 SCF UBIQUITIN REMARK 900 RELATED ID: 1LDJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CUL1-RBX1-SKP1-F BOXSKP2 SCF UBIQUITIN DBREF 1LDK A 15 410 UNP Q13616 CUL1_HUMAN 15 410 DBREF 1LDK B 411 776 UNP Q13616 CUL1_HUMAN 411 776 DBREF 1LDK C 1019 1108 UNP P62877 RBX1_HUMAN 19 108 DBREF 1LDK D 2002 2140 UNP P63208 SKP1_HUMAN 1 139 DBREF 1LDK E 3109 3149 UNP Q13309 SKP2_HUMAN 97 137 SEQADV 1LDK D UNP P63208 ASP 36 DELETION SEQADV 1LDK D UNP P63208 ASP 37 DELETION SEQADV 1LDK D UNP P63208 GLU 38 DELETION SEQADV 1LDK D UNP P63208 GLY 39 DELETION SEQADV 1LDK D UNP P63208 ASP 40 DELETION SEQADV 1LDK D UNP P63208 ASP 41 DELETION SEQRES 1 A 396 ILE GLY LEU ASP GLN ILE TRP ASP ASP LEU ARG ALA GLY SEQRES 2 A 396 ILE GLN GLN VAL TYR THR ARG GLN SER MET ALA LYS SER SEQRES 3 A 396 ARG TYR MET GLU LEU TYR THR HIS VAL TYR ASN TYR CYS SEQRES 4 A 396 THR SER VAL HIS GLN SER ASN GLN ALA ARG GLY ALA GLY SEQRES 5 A 396 VAL PRO PRO SER LYS SER LYS LYS GLY GLN THR PRO GLY SEQRES 6 A 396 GLY ALA GLN PHE VAL GLY LEU GLU LEU TYR LYS ARG LEU SEQRES 7 A 396 LYS GLU PHE LEU LYS ASN TYR LEU THR ASN LEU LEU LYS SEQRES 8 A 396 ASP GLY GLU ASP LEU MET ASP GLU SER VAL LEU LYS PHE SEQRES 9 A 396 TYR THR GLN GLN TRP GLU ASP TYR ARG PHE SER SER LYS SEQRES 10 A 396 VAL LEU ASN GLY ILE CYS ALA TYR LEU ASN ARG HIS TRP SEQRES 11 A 396 VAL ARG ARG GLU CYS ASP GLU GLY ARG LYS GLY ILE TYR SEQRES 12 A 396 GLU ILE TYR SER LEU ALA LEU VAL THR TRP ARG ASP CYS SEQRES 13 A 396 LEU PHE ARG PRO LEU ASN LYS GLN VAL THR ASN ALA VAL SEQRES 14 A 396 LEU LYS LEU ILE GLU LYS GLU ARG ASN GLY GLU THR ILE SEQRES 15 A 396 ASN THR ARG LEU ILE SER GLY VAL VAL GLN SER TYR VAL SEQRES 16 A 396 GLU LEU GLY LEU ASN GLU ASP ASP ALA PHE ALA LYS GLY SEQRES 17 A 396 PRO THR LEU THR VAL TYR LYS GLU SER PHE GLU SER GLN SEQRES 18 A 396 PHE LEU ALA ASP THR GLU ARG PHE TYR THR ARG GLU SER SEQRES 19 A 396 THR GLU PHE LEU GLN GLN ASN PRO VAL THR GLU TYR MET SEQRES 20 A 396 LYS LYS ALA GLU ALA ARG LEU LEU GLU GLU GLN ARG ARG SEQRES 21 A 396 VAL GLN VAL TYR LEU HIS GLU SER THR GLN ASP GLU LEU SEQRES 22 A 396 ALA ARG LYS CYS GLU GLN VAL LEU ILE GLU LYS HIS LEU SEQRES 23 A 396 GLU ILE PHE HIS THR GLU PHE GLN ASN LEU LEU ASP ALA SEQRES 24 A 396 ASP LYS ASN GLU ASP LEU GLY ARG MET TYR ASN LEU VAL SEQRES 25 A 396 SER ARG ILE GLN ASP GLY LEU GLY GLU LEU LYS LYS LEU SEQRES 26 A 396 LEU GLU THR HIS ILE HIS ASN GLN GLY LEU ALA ALA ILE SEQRES 27 A 396 GLU LYS CYS GLY GLU ALA ALA LEU ASN ASP PRO LYS MET SEQRES 28 A 396 TYR VAL GLN THR VAL LEU ASP VAL HIS LYS LYS TYR ASN SEQRES 29 A 396 ALA LEU VAL MET SER ALA PHE ASN ASN ASP ALA GLY PHE SEQRES 30 A 396 VAL ALA ALA LEU ASP LYS ALA CYS GLY ARG PHE ILE ASN SEQRES 31 A 396 ASN ASN ALA VAL THR LYS SEQRES 1 B 366 MET ALA GLN SER SER SER LYS SER PRO GLU LEU LEU ALA SEQRES 2 B 366 ARG TYR CYS ASP SER LEU LEU LYS LYS SER SER LYS ASN SEQRES 3 B 366 PRO GLU GLU ALA GLU LEU GLU ASP THR LEU ASN GLN VAL SEQRES 4 B 366 MET VAL VAL PHE LYS TYR ILE GLU ASP LYS ASP VAL PHE SEQRES 5 B 366 GLN LYS PHE TYR ALA LYS MET LEU ALA LYS ARG LEU VAL SEQRES 6 B 366 HIS GLN ASN SER ALA SER ASP ASP ALA GLU ALA SER MET SEQRES 7 B 366 ILE SER LYS LEU LYS GLN ALA CYS GLY PHE GLU TYR THR SEQRES 8 B 366 SER LYS LEU GLN ARG MET PHE GLN ASP ILE GLY VAL SER SEQRES 9 B 366 LYS ASP LEU ASN GLU GLN PHE LYS LYS HIS LEU THR ASN SEQRES 10 B 366 SER GLU PRO LEU ASP LEU ASP PHE SER ILE GLN VAL LEU SEQRES 11 B 366 SER SER GLY SER TRP PRO PHE GLN GLN SER CYS THR PHE SEQRES 12 B 366 ALA LEU PRO SER GLU LEU GLU ARG SER TYR GLN ARG PHE SEQRES 13 B 366 THR ALA PHE TYR ALA SER ARG HIS SER GLY ARG LYS LEU SEQRES 14 B 366 THR TRP LEU TYR GLN LEU SER LYS GLY GLU LEU VAL THR SEQRES 15 B 366 ASN CYS PHE LYS ASN ARG TYR THR LEU GLN ALA SER THR SEQRES 16 B 366 PHE GLN MET ALA ILE LEU LEU GLN TYR ASN THR GLU ASP SEQRES 17 B 366 ALA TYR THR VAL GLN GLN LEU THR ASP SER THR GLN ILE SEQRES 18 B 366 LYS MET ASP ILE LEU ALA GLN VAL LEU GLN ILE LEU LEU SEQRES 19 B 366 LYS SER LYS LEU LEU VAL LEU GLU ASP GLU ASN ALA ASN SEQRES 20 B 366 VAL ASP GLU VAL GLU LEU LYS PRO ASP THR LEU ILE LYS SEQRES 21 B 366 LEU TYR LEU GLY TYR LYS ASN LYS LYS LEU ARG VAL ASN SEQRES 22 B 366 ILE ASN VAL PRO MET LYS THR GLU GLN LYS GLN GLU GLN SEQRES 23 B 366 GLU THR THR HIS LYS ASN ILE GLU GLU ASP ARG LYS LEU SEQRES 24 B 366 LEU ILE GLN ALA ALA ILE VAL ARG ILE MET LYS MET ARG SEQRES 25 B 366 LYS VAL LEU LYS HIS GLN GLN LEU LEU GLY GLU VAL LEU SEQRES 26 B 366 THR GLN LEU SER SER ARG PHE LYS PRO ARG VAL PRO VAL SEQRES 27 B 366 ILE LYS LYS CYS ILE ASP ILE LEU ILE GLU LYS GLU TYR SEQRES 28 B 366 LEU GLU ARG VAL ASP GLY GLU LYS ASP THR TYR SER TYR SEQRES 29 B 366 LEU ALA SEQRES 1 C 90 LYS LYS ARG PHE GLU VAL LYS LYS TRP ASN ALA VAL ALA SEQRES 2 C 90 LEU TRP ALA TRP ASP ILE VAL VAL ASP ASN CYS ALA ILE SEQRES 3 C 90 CYS ARG ASN HIS ILE MET ASP LEU CYS ILE GLU CYS GLN SEQRES 4 C 90 ALA ASN GLN ALA SER ALA THR SER GLU GLU CYS THR VAL SEQRES 5 C 90 ALA TRP GLY VAL CYS ASN HIS ALA PHE HIS PHE HIS CYS SEQRES 6 C 90 ILE SER ARG TRP LEU LYS THR ARG GLN VAL CYS PRO LEU SEQRES 7 C 90 ASP ASN ARG GLU TRP GLU PHE GLN LYS TYR GLY HIS SEQRES 1 D 133 PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE PHE SEQRES 2 D 133 GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR ILE SEQRES 3 D 133 LYS THR MET LEU GLU ASP LEU GLY MET ASP PRO VAL PRO SEQRES 4 D 133 LEU PRO ASN VAL ASN ALA ALA ILE LEU LYS LYS VAL ILE SEQRES 5 D 133 GLN TRP CYS THR HIS HIS LYS ASP ASP PRO PRO PRO PRO SEQRES 6 D 133 GLU ASP ASP GLU ASN LYS GLU LYS ARG THR ASP ASP ILE SEQRES 7 D 133 PRO VAL TRP ASP GLN GLU PHE LEU LYS VAL ASP GLN GLY SEQRES 8 D 133 THR LEU PHE GLU LEU ILE LEU ALA ALA ASN TYR LEU ASP SEQRES 9 D 133 ILE LYS GLY LEU LEU ASP VAL THR CYS LYS THR VAL ALA SEQRES 10 D 133 ASN MET ILE LYS GLY LYS THR PRO GLU GLU ILE ARG LYS SEQRES 11 D 133 THR PHE ASN SEQRES 1 E 41 TRP ASP SER LEU PRO ASP GLU LEU LEU LEU GLY ILE PHE SEQRES 2 E 41 SER CYS LEU CYS LEU PRO GLU LEU LEU LYS VAL SER GLY SEQRES 3 E 41 VAL CYS LYS ARG TRP TYR ARG LEU ALA SER ASP GLU SER SEQRES 4 E 41 LEU TRP HET ZN C4001 1 HET ZN C4002 1 HET ZN C4003 1 HETNAM ZN ZINC ION FORMUL 6 ZN 3(ZN 2+) HELIX 1 1 ILE A 20 VAL A 31 1 12 HELIX 2 2 ALA A 38 CYS A 53 1 16 HELIX 3 3 GLY A 85 ASN A 102 1 18 HELIX 4 4 GLU A 113 ARG A 142 1 30 HELIX 5 5 ILE A 159 ARG A 168 1 10 HELIX 6 6 LEU A 175 LYS A 189 1 15 HELIX 7 7 ILE A 196 LEU A 211 1 16 HELIX 8 8 THR A 226 PHE A 232 1 7 HELIX 9 9 PHE A 232 ASN A 255 1 24 HELIX 10 10 PRO A 256 TYR A 278 1 23 HELIX 11 11 HIS A 280 THR A 283 5 4 HELIX 12 12 GLN A 284 GLU A 297 1 14 HELIX 13 13 HIS A 299 ALA A 313 1 15 HELIX 14 14 LYS A 315 VAL A 326 1 12 HELIX 15 15 LEU A 333 GLY A 356 1 24 HELIX 16 16 ASP A 362 ALA A 384 1 23 HELIX 17 17 ASP A 388 GLY A 400 1 13 HELIX 18 18 LYS B 417 LYS B 431 1 15 HELIX 19 19 GLU B 438 LYS B 454 1 17 HELIX 20 20 ASP B 460 HIS B 476 1 17 HELIX 21 21 SER B 481 GLN B 494 1 14 HELIX 22 22 GLU B 499 ASN B 527 1 29 HELIX 23 23 SER B 562 SER B 572 1 11 HELIX 24 24 THR B 605 LEU B 611 1 7 HELIX 25 25 VAL B 622 ASP B 627 1 6 HELIX 26 26 LYS B 632 SER B 646 1 15 HELIX 27 27 THR B 690 LYS B 701 1 12 HELIX 28 28 LYS B 701 ILE B 711 1 11 HELIX 29 29 ILE B 715 LYS B 720 1 6 HELIX 30 30 LYS B 726 LEU B 731 1 6 HELIX 31 31 CYS B 752 ILE B 757 1 6 HELIX 32 32 GLU B 758 GLU B 760 5 3 HELIX 33 33 ILE C 1054 ASN C 1059 1 6 HELIX 34 34 ASP D 2017 LYS D 2022 1 6 HELIX 35 35 SER D 2024 MET D 2030 1 7 HELIX 36 36 ASN D 2045 HIS D 2059 1 15 HELIX 37 37 VAL D 2087 LEU D 2093 1 7 HELIX 38 38 ASP D 2096 LEU D 2110 1 15 HELIX 39 39 ILE D 2112 MET D 2126 1 15 HELIX 40 40 THR D 2131 ASN D 2140 1 10 HELIX 41 41 PRO E 3113 PHE E 3121 1 9 HELIX 42 42 CYS E 3125 PRO E 3127 5 3 HELIX 43 43 GLU E 3128 SER E 3133 1 6 HELIX 44 44 CYS E 3136 SER E 3144 1 9 SHEET 1 A 3 ILE B 537 LEU B 540 0 SHEET 2 A 3 ALA C1029 TRP C1035 1 O ALA C1031 N LEU B 540 SHEET 3 A 3 ARG B 577 TRP B 581 -1 N LYS B 578 O ALA C1034 SHEET 1 B 3 GLN B 602 SER B 604 0 SHEET 2 B 3 LYS B 587 GLU B 589 -1 N GLY B 588 O ALA B 603 SHEET 3 B 3 LYS C1026 TRP C1027 -1 O LYS C1026 N GLU B 589 SHEET 1 C 2 TYR B 620 THR B 621 0 SHEET 2 C 2 LEU B 668 ILE B 669 -1 O ILE B 669 N TYR B 620 SHEET 1 D 2 VAL C1070 ALA C1071 0 SHEET 2 D 2 PHE C1079 HIS C1080 -1 O PHE C1079 N ALA C1071 SSBOND 1 CYS C 1042 CYS C 1083 1555 1555 2.03 LINK SG CYS C1042 ZN ZN C4001 1555 1555 2.30 LINK SG CYS C1045 ZN ZN C4001 1555 1555 2.32 LINK SG CYS C1053 ZN ZN C4003 1555 1555 2.31 LINK SG CYS C1056 ZN ZN C4003 1555 1555 2.30 LINK SG CYS C1068 ZN ZN C4003 1555 1555 2.30 LINK SG CYS C1075 ZN ZN C4002 1555 1555 2.30 LINK ND1 HIS C1077 ZN ZN C4002 1555 1555 2.05 LINK NE2 HIS C1077 ZN ZN C4002 1555 1555 2.57 LINK ND1 HIS C1080 ZN ZN C4001 1555 1555 2.06 LINK ND1 HIS C1082 ZN ZN C4003 1555 1555 2.05 LINK SG CYS C1083 ZN ZN C4001 1555 1555 2.28 LINK SG CYS C1094 ZN ZN C4002 1555 1555 2.32 LINK OD1 ASP C1097 ZN ZN C4002 1555 1555 2.57 SITE 1 AC1 1 ASP C1097 CRYST1 219.378 50.529 158.610 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019791 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.006305 0.00000