HEADER OXIDOREDUCTASE 25-NOV-87 1LDM TITLE REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: M4 LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SQUALUS ACANTHIAS; SOURCE 3 ORGANISM_COMMON: SPINY DOGFISH; SOURCE 4 ORGANISM_TAXID: 7797 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.GRIFFITH,M.G.ROSSMANN REVDAT 8 14-FEB-24 1LDM 1 REMARK SEQADV REVDAT 7 29-NOV-17 1LDM 1 HELIX REVDAT 6 22-OCT-14 1LDM 1 HEADER LINK REVDAT 5 08-MAY-13 1LDM 1 REMARK MTRIX1 MTRIX2 MTRIX3 REVDAT 4 25-AUG-09 1LDM 1 SOURCE REVDAT 3 24-FEB-09 1LDM 1 VERSN REVDAT 2 15-APR-90 1LDM 1 FORMUL REVDAT 1 12-JUL-89 1LDM 0 JRNL AUTH C.ABAD-ZAPATERO,J.P.GRIFFITH,J.L.SUSSMAN,M.G.ROSSMANN JRNL TITL REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE JRNL TITL 2 DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 198 445 1987 JRNL REFN ISSN 0022-2836 JRNL PMID 3430615 JRNL DOI 10.1016/0022-2836(87)90293-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.WHITE,M.L.HACKERT,M.BUEHNER,M.J.ADAMS,G.C.FORD, REMARK 1 AUTH 2 P.J.LENTZJUNIOR,I.E.SMILEY,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL A COMPARISON OF THE STRUCTURES OF APO DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE AND ITS TERNARY COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 102 759 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.EVENTOFF,M.G.ROSSMANN,S.S.TAYLOR,H.-J.TORFF,H.MEYER, REMARK 1 AUTH 2 W.KEIL,H.-H.KILTZ REMARK 1 TITL STRUCTURAL ADAPTATIONS OF LACTATE DEHYDROGENASE ISOZYMES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 74 2677 1977 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.WHITE,M.G.ROSSMANN,G.C.FORD REMARK 1 TITL A 5 ANGSTROMS X-RAY DIFFRACTION STUDY OF COENZYME-DEFICIENT REMARK 1 TITL 2 LACTATE DEHYDROGENASE,NAD-PYRUVATE TERNARY COMPLEX REMARK 1 REF J.MOL.BIOL. V. 98 259 1975 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH W.EVENTOFF,M.L.HACKERT,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL A STRUCTURAL COMPARISON OF PORCINE B4 AND DOGFISH A4 REMARK 1 TITL 2 ISOZYMES OF LACTATE DEHYDROGENASE REMARK 1 EDIT C.L.MARKERT REMARK 1 REF ISOZYMES-MOLECULAR STRUCTURE V. 1 137 1975 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 5 REMARK 1 AUTH J.J.HOLBROOK,A.LILJAS,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL LACTATE DEHYDROGENASE REMARK 1 EDIT P.D.BOYER REMARK 1 REF THE ENZYMES,THIRD EDITION V. 11 191 1975 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 6 REMARK 1 AUTH A.LILJAS,M.G.ROSSMANN REMARK 1 TITL X-RAY STUDIES OF PROTEIN INTERACTIONS REMARK 1 REF ANNU.REV.BIOCHEM. V. 43 475 1974 REMARK 1 REFN ISSN 0066-4154 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.G.ROSSMANN,D.MORAS,K.W.OLSEN REMARK 1 TITL CHEMICAL AND BIOLOGICAL EVOLUTION OF A NUCLEOTIDE BINDING REMARK 1 TITL 2 PROTEIN REMARK 1 REF NATURE V. 250 194 1974 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.G.ROSSMANN,A.LILJAS REMARK 1 TITL RECOGNITION OF STRUCTURAL DOMAINS IN GLOBULAR PROTEINS REMARK 1 REF J.MOL.BIOL. V. 85 177 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 9 REMARK 1 AUTH M.J.ADAMS,G.C.FORD,A.LILJAS,M.G.ROSSMANN REMARK 1 TITL ATOMIC CO-ORDINATES FOR DOGFISH M4 APO-LACTATE DEHYDROGENASE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 53 46 1973 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 10 REMARK 1 AUTH M.J.ADAMS,M.BUEHNER,K.CHANDRASEKHAR,G.C.FORD,M.L.HACKERT, REMARK 1 AUTH 2 A.LILJAS,M.G.ROSSMANN,I.E.SMILEY,W.S.ALLISON,J.EVERSE, REMARK 1 AUTH 3 N.O.KAPLAN,S.S.TAYLOR REMARK 1 TITL STRUCTURE-FUNCTION RELATIONSHIPS IN LACTATE DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 1968 1973 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 11 REMARK 1 AUTH S.S.TAYLOR,S.S.OXLEY,W.S.ALLISON,N.O.KAPLAN REMARK 1 TITL AMINO-ACID SEQUENCE OF DOGFISH M4 LACTATE DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 1790 1973 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 12 REMARK 1 AUTH M.G.ROSSMANN,M.J.ADAMS,M.BUEHNER,G.C.FORD,M.L.HACKERT, REMARK 1 AUTH 2 A.LILJAS,S.T.RAO,L.J.BANASZAK,E.HILL,D.TSERNOGLOU,L.WEBB REMARK 1 TITL MOLECULAR SYMMETRY AXES AND SUBUNIT INTERFACES IN CERTAIN REMARK 1 TITL 2 DEHYDROGENASES REMARK 1 REF J.MOL.BIOL. V. 76 533 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 13 REMARK 1 AUTH M.J.ADAMS,A.LILJAS,M.G.ROSSMANN REMARK 1 TITL FUNCTIONAL ANION BINDING SITES IN DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 519 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 14 REMARK 1 AUTH A.MCPHERSONJUNIOR REMARK 1 TITL BINDING OF OXAMATE TO THE APOENZYME OF DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 528 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 15 REMARK 1 AUTH K.CHANDRASEKHAR,A.MCPHERSONJUNIOR,M.J.ADAMS,M.G.ROSSMANN REMARK 1 TITL CONFORMATION OF COENZYME FRAGMENTS WHEN BOUND TO LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 503 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 16 REMARK 1 AUTH I.E.SMILEY,R.KOEKOEK,M.J.ADAMS,M.G.ROSSMANN REMARK 1 TITL THE 5 ANGSTROMS RESOLUTION STRUCTURE OF AN ABORTIVE TERNARY REMARK 1 TITL 2 COMPLEX OF LACTATE DEHYDROGENASE AND ITS COMPARISON WITH THE REMARK 1 TITL 3 APO-ENZYME REMARK 1 REF J.MOL.BIOL. V. 55 467 1971 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 17 REMARK 1 AUTH M.J.ADAMS,G.C.FORD,R.KOEKOEK,P.J.LENTZJUNIOR, REMARK 1 AUTH 2 A.MCPHERSONJUNIOR,M.G.ROSSMANN,I.E.SMILEY,R.W.SCHEVITZ, REMARK 1 AUTH 3 A.J.WONACOTT REMARK 1 TITL STRUCTURE OF LACTATE DEHYDROGENASE AT 2.8 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF NATURE V. 227 1098 1970 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 18 REMARK 1 AUTH M.J.ADAMS,D.J.HAAS,B.A.JEFFERY,A.MCPHERSONJUNIOR, REMARK 1 AUTH 2 H.L.MERMALL,M.G.ROSSMANN,R.W.SCHEVITZ,A.J.WONACOTT REMARK 1 TITL LOW RESOLUTION STUDY OF CRYSTALLINE L-LACTATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 41 159 1969 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 19 REMARK 1 AUTH M.G.ROSSMANN,B.A.JEFFERY,P.MAIN,S.WARREN REMARK 1 TITL THE CRYSTAL STRUCTURE OF LACTIC DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 57 515 1967 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.048 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.213 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.267 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.260 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SPACE GROUP C 4 21 2 (WHICH, MORE PROPERLY, SHOULD BE NAMED REMARK 3 C 4 2 21) IS A NON-STANDARD REPRESENTATION OF SPACE GROUP REMARK 3 P 4 21 2. IN THIS CASE THE AXES OF THE UNIT CELL ARE REMARK 3 CONSIDERED TO BE LEFT-HANDED. REMARK 4 REMARK 4 1LDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z REMARK 290 10555 -X+1/2,-Y+1/2,Z REMARK 290 11555 -Y,X,Z REMARK 290 12555 Y,-X,Z REMARK 290 13555 -X,Y,-Z REMARK 290 14555 X,-Y,-Z REMARK 290 15555 Y+1/2,X+1/2,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 -1.414170 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 1.000000 1.000000 47.55112 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 4 -1.414170 -1.000000 -1.000000 47.55112 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 5 1.414170 0.000000 1.000000 47.55112 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.55112 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 1.414170 1.000000 1.000000 0.00000 REMARK 290 SMTRY1 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.55112 REMARK 290 SMTRY1 10 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 -1.414170 0.000000 -1.000000 47.55112 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 1.000000 1.000000 0.00000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 12 -1.414170 -1.000000 -1.000000 0.00000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 13 1.414170 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 1.414170 1.000000 1.000000 47.55112 REMARK 290 SMTRY1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 -1.000000 -1.000000 47.55112 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: NON-CRYSTALLOGRAPHIC SYMMETRY ELEMENTS CORRESPONDING TO THE REMARK 300 THREE ORTHOGONAL MOLECULAR SYMMETRY AXES ARE PRESENTED ON REMARK 300 THE *MTRIX* RECORDS BELOW. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 332 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES IN THIS ENTRY ARE NUMBERED SEQUENTIALLY FROM REMARK 999 1 - 329. SEE THE PAPER CITED AS REFERENCE 1 ABOVE FOR AN REMARK 999 EXPLANATION OF THE NUMBERING SYSTEM USED IN SOME EARLIER REMARK 999 LDH ENTRIES. DBREF 1LDM A 1 329 UNP P00341 LDHA_SQUAC 1 329 SEQADV 1LDM ASN A 205 UNP P00341 TRP 205 CONFLICT SEQADV 1LDM VAL A 206 UNP P00341 ASN 206 CONFLICT SEQADV 1LDM SER A 208 UNP P00341 LEU 208 CONFLICT SEQADV 1LDM ILE A 209 UNP P00341 LYS 209 CONFLICT SEQADV 1LDM LYS A 210 UNP P00341 GLU 210 CONFLICT SEQADV 1LDM LEU A 214 UNP P00341 GLU 214 CONFLICT SEQADV 1LDM ASP A 215 UNP P00341 LEU 215 CONFLICT SEQADV 1LDM ASN A 308 UNP P00341 ASP 308 CONFLICT SEQRES 1 A 329 ALA THR LEU LYS ASP LYS LEU ILE GLY HIS LEU ALA THR SEQRES 2 A 329 SER GLN GLU PRO ARG SER TYR ASN LYS ILE THR VAL VAL SEQRES 3 A 329 GLY VAL GLY ALA VAL GLY MET ALA CYS ALA ILE SER ILE SEQRES 4 A 329 LEU MET LYS ASP LEU ALA ASP GLU VAL ALA LEU VAL ASP SEQRES 5 A 329 VAL MET GLU ASP LYS LEU LYS GLY GLU MET MET ASP LEU SEQRES 6 A 329 GLN HIS GLY SER LEU PHE LEU HIS THR ALA LYS ILE VAL SEQRES 7 A 329 SER GLY LYS ASP TYR SER VAL SER ALA GLY SER LYS LEU SEQRES 8 A 329 VAL VAL ILE THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SEQRES 9 A 329 SER ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE SEQRES 10 A 329 LYS PHE ILE ILE PRO ASN ILE VAL LYS HIS SER PRO ASP SEQRES 11 A 329 CYS ILE ILE LEU VAL VAL SER ASN PRO VAL ASP VAL LEU SEQRES 12 A 329 THR TYR VAL ALA TRP LYS LEU SER GLY LEU PRO MET HIS SEQRES 13 A 329 ARG ILE ILE GLY SER GLY CYS ASN LEU ASP SER ALA ARG SEQRES 14 A 329 PHE ARG TYR LEU MET GLY GLU ARG LEU GLY VAL HIS SER SEQRES 15 A 329 CYS SER CYS HIS GLY TRP VAL ILE GLY GLU HIS GLY ASP SEQRES 16 A 329 SER VAL PRO SER VAL TRP SER GLY MET ASN VAL ALA SER SEQRES 17 A 329 ILE LYS LEU HIS PRO LEU ASP GLY THR ASN LYS ASP LYS SEQRES 18 A 329 GLN ASP TRP LYS LYS LEU HIS LYS ASP VAL VAL ASP SER SEQRES 19 A 329 ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR THR SER TRP SEQRES 20 A 329 ALA ILE GLY LEU SER VAL ALA ASP LEU ALA GLU THR ILE SEQRES 21 A 329 MET LYS ASN LEU CYS ARG VAL HIS PRO VAL SER THR MET SEQRES 22 A 329 VAL LYS ASP PHE TYR GLY ILE LYS ASP ASN VAL PHE LEU SEQRES 23 A 329 SER LEU PRO CYS VAL LEU ASN ASP HIS GLY ILE SER ASN SEQRES 24 A 329 ILE VAL LYS MET LYS LEU LYS PRO ASN GLU GLU GLN GLN SEQRES 25 A 329 LEU GLN LYS SER ALA THR THR LEU TRP ASP ILE GLN LYS SEQRES 26 A 329 ASP LEU LYS PHE HET NAD A 330 44 HET OXM A 331 6 HET OXM A 332 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 OXM 2(C2 H3 N O3) FORMUL 5 HOH *245(H2 O) HELIX 1 AA THR A 2 ILE A 8 1 7 HELIX 2 AB GLY A 29 ASP A 43 1 15 HELIX 3 AC MET A 54 SER A 69 1 16 HELIX 4 AD GLY A 103 ILE A 121 13/10 HELIX 103-111 19 HELIX 5 AE PHE A 119 SER A 128 1CONTIGUOUS WITH HELIX AD 10 HELIX 6 A1F VAL A 140 GLY A 152 1SHORTER IN APO 13 HELIX 7 A2F CYS A 163 GLY A 179 13 H BONDS IN MIDDL ABSENT APO 17 HELIX 8 A1G TRP A 224 TYR A 236 13/10 H-BOND 234-237 13 HELIX 9 A2G VAL A 238 GLY A 243 5 6 HELIX 10 A3G ALA A 248 ASN A 263 13/10 H-BOND 248-251 16 HELIX 11 AH PRO A 307 ILE A 323 1 17 SHEET 1 SH1 6 LYS A 76 GLY A 80 0 SHEET 2 SH1 6 GLU A 47 VAL A 51 1 N LEU A 50 O VAL A 78 SHEET 3 SH1 6 ASN A 21 VAL A 26 1 N VAL A 25 O ALA A 49 SHEET 4 SH1 6 LYS A 90 ILE A 94 1 N VAL A 93 O THR A 24 SHEET 5 SH1 6 ILE A 132 VAL A 136 1 N LEU A 134 O VAL A 92 SHEET 6 SH1 6 ARG A 157 GLY A 160 1 N ILE A 159 O ILE A 133 SHEET 1 SH2 3 SER A 184 TRP A 188 0 SHEET 2 SH2 3 GLY A 203 VAL A 206 -1 N ASN A 205 O SER A 184 SHEET 3 SH2 3 ILE A 209 LEU A 211 -1 O ILE A 209 N VAL A 206 SHEET 1 SH3 3 LEU A 264 MET A 273 0 SHEET 2 SH3 3 ASN A 283 ASN A 293 -1 N CYS A 290 O VAL A 267 SHEET 3 SH3 3 HIS A 295 VAL A 301 -1 N ASN A 299 O CYS A 290 CISPEP 1 ASN A 138 PRO A 139 0 -2.95 SITE 1 AC1 38 VAL A 28 GLY A 29 ASP A 52 VAL A 53 SITE 2 AC1 38 MET A 54 GLU A 55 ASP A 56 LYS A 57 SITE 3 AC1 38 LEU A 58 LYS A 59 GLY A 60 GLU A 61 SITE 4 AC1 38 SER A 79 LYS A 81 ASP A 82 TYR A 83 SITE 5 AC1 38 THR A 95 ALA A 96 ALA A 98 ARG A 99 SITE 6 AC1 38 VAL A 136 SER A 137 ASN A 138 SER A 161 SITE 7 AC1 38 HIS A 193 LEU A 241 LYS A 242 TYR A 244 SITE 8 AC1 38 SER A 246 OXM A 331 HOH A 347 HOH A 353 SITE 9 AC1 38 HOH A 359 HOH A 373 HOH A 384 HOH A 493 SITE 10 AC1 38 HOH A 496 HOH A 497 SITE 1 AC2 4 ARG A 106 HIS A 193 ALA A 235 NAD A 330 SITE 1 AC3 7 GLN A 111 ARG A 171 HIS A 186 VAL A 291 SITE 2 AC3 7 HOH A 335 HOH A 424 HOH A 439 CRYST1 134.500 134.500 85.900 90.00 90.00 90.00 C 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007435 0.010515 0.010515 0.00000 SCALE2 0.007435 0.000000 0.010515 0.00000 SCALE3 -0.011641 0.000000 0.000000 0.00000