data_1LDO # _entry.id 1LDO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LDO RCSB RCSB015861 WWPDB D_1000015861 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LCV 'streptavidin-norbiotin complex' unspecified PDB 1LCW 'streptavidin-homobiotin complex' unspecified PDB 1LCZ 'streptavidin-BCAP complex' unspecified PDB 1LDQ 'avidin-homobiotin complex' unspecified PDB 1LEL 'avidin BCAP complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LDO _pdbx_database_status.recvd_initial_deposition_date 2002-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pazy, Y.' 1 'Kulik, T.' 2 'Bayer, E.A.' 3 'Wilchek, M.' 4 'Livnah, O.' 5 # _citation.id primary _citation.title 'Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 30892 _citation.page_last 30900 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12055191 _citation.pdbx_database_id_DOI 10.1074/jbc.M202874200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pazy, Y.' 1 ? primary 'Kulik, T.' 2 ? primary 'Bayer, E.A.' 3 ? primary 'Wilchek, M.' 4 ? primary 'Livnah, O.' 5 ? # _cell.entry_id 1LDO _cell.length_a 71.103 _cell.length_b 79.813 _cell.length_c 43.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDO _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat avidin 14350.081 2 ? ? ? ? 2 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 3 non-polymer syn NORBIOTIN 230.284 2 ? ? ? ? 4 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYTTAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ; _entity_poly.pdbx_seq_one_letter_code_can ;ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYTTAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ARG n 1 3 LYS n 1 4 CYS n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 GLY n 1 9 LYS n 1 10 TRP n 1 11 THR n 1 12 ASN n 1 13 ASP n 1 14 LEU n 1 15 GLY n 1 16 SER n 1 17 ASN n 1 18 MET n 1 19 THR n 1 20 ILE n 1 21 GLY n 1 22 ALA n 1 23 VAL n 1 24 ASN n 1 25 SER n 1 26 ARG n 1 27 GLY n 1 28 GLU n 1 29 PHE n 1 30 THR n 1 31 GLY n 1 32 THR n 1 33 TYR n 1 34 THR n 1 35 THR n 1 36 ALA n 1 37 VAL n 1 38 THR n 1 39 ALA n 1 40 THR n 1 41 SER n 1 42 ASN n 1 43 GLU n 1 44 ILE n 1 45 LYS n 1 46 GLU n 1 47 SER n 1 48 PRO n 1 49 LEU n 1 50 HIS n 1 51 GLY n 1 52 THR n 1 53 GLU n 1 54 ASN n 1 55 THR n 1 56 ILE n 1 57 ASN n 1 58 LYS n 1 59 ARG n 1 60 THR n 1 61 GLN n 1 62 PRO n 1 63 THR n 1 64 PHE n 1 65 GLY n 1 66 PHE n 1 67 THR n 1 68 VAL n 1 69 ASN n 1 70 TRP n 1 71 LYS n 1 72 PHE n 1 73 SER n 1 74 GLU n 1 75 SER n 1 76 THR n 1 77 THR n 1 78 VAL n 1 79 PHE n 1 80 THR n 1 81 GLY n 1 82 GLN n 1 83 CYS n 1 84 PHE n 1 85 ILE n 1 86 ASP n 1 87 ARG n 1 88 ASN n 1 89 GLY n 1 90 LYS n 1 91 GLU n 1 92 VAL n 1 93 LEU n 1 94 LYS n 1 95 THR n 1 96 MET n 1 97 TRP n 1 98 LEU n 1 99 LEU n 1 100 ARG n 1 101 SER n 1 102 SER n 1 103 VAL n 1 104 ASN n 1 105 ASP n 1 106 ILE n 1 107 GLY n 1 108 ASP n 1 109 ASP n 1 110 TRP n 1 111 LYS n 1 112 ALA n 1 113 THR n 1 114 ARG n 1 115 VAL n 1 116 GLY n 1 117 ILE n 1 118 ASN n 1 119 ILE n 1 120 PHE n 1 121 THR n 1 122 ARG n 1 123 LEU n 1 124 ARG n 1 125 THR n 1 126 GLN n 1 127 LYS n 1 128 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus Gallus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction 'egg white' _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AVID_CHICK _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_accession P02701 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LDO A 1 ? 128 ? P02701 25 ? 152 ? 1 128 2 1 1LDO B 1 ? 128 ? P02701 25 ? 152 ? 201 328 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1LDO THR A 34 ? UNP P02701 ILE 58 conflict 34 1 2 1LDO THR B 34 ? UNP P02701 ILE 58 conflict 234 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SNR non-polymer . NORBIOTIN '4-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-BUTYRIC ACID' 'C9 H14 N2 O3 S' 230.284 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LDO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.31 _exptl_crystal.density_Matthews 2.13 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details '12% PEG 1000, 0.1 immidazole malate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2001-12-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'max flux optics' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1LDO _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 12800 _reflns.number_all ? _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.115 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.24 _reflns_shell.percent_possible_all 89.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LDO _refine.ls_number_reflns_obs 11701 _refine.ls_number_reflns_all 12323 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 622 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1892 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 2057 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 30.0 # _struct.entry_id 1LDO _struct.title 'avidin-norbioitn complex' _struct.pdbx_descriptor 'avidin, NORBIOTIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LDO _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'avidin, streptavidin, biotin, high affinity systems, ligand exchange, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assembly is generated by the two fold axis -x, -y+1, z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 55 ? ARG A 59 ? THR A 55 ARG A 59 5 ? 5 HELX_P HELX_P2 2 ASP A 105 ? LYS A 111 ? ASP A 105 LYS A 111 5 ? 7 HELX_P HELX_P3 3 THR B 55 ? ARG B 59 ? THR B 255 ARG B 259 5 ? 5 HELX_P HELX_P4 4 ASP B 105 ? LYS B 111 ? ASP B 305 LYS B 311 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 83 SG ? ? A CYS 4 A CYS 83 1_555 ? ? ? ? ? ? ? 2.396 ? ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 83 SG ? ? B CYS 204 B CYS 283 1_555 ? ? ? ? ? ? ? 2.142 ? ? covale1 covale one ? A ASN 17 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 17 A NAG 151 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation covale2 covale one ? B ASN 17 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 217 B NAG 352 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 8 ? ASN A 12 ? GLY A 8 ASN A 12 A 2 ASN A 17 ? ILE A 20 ? ASN A 17 ILE A 20 A 3 GLU A 28 ? THR A 34 ? GLU A 28 THR A 34 A 4 SER A 47 ? GLU A 53 ? SER A 47 GLU A 53 A 5 THR A 63 ? ASN A 69 ? THR A 63 ASN A 69 A 6 THR A 76 ? ILE A 85 ? THR A 76 ILE A 85 A 7 GLU A 91 ? ARG A 100 ? GLU A 91 ARG A 100 A 8 THR A 113 ? ARG A 122 ? THR A 113 ARG A 122 A 9 GLY A 8 ? ASN A 12 ? GLY A 8 ASN A 12 B 1 GLY B 8 ? ASN B 12 ? GLY B 208 ASN B 212 B 2 ASN B 17 ? ILE B 20 ? ASN B 217 ILE B 220 B 3 GLU B 28 ? THR B 34 ? GLU B 228 THR B 234 B 4 SER B 47 ? GLU B 53 ? SER B 247 GLU B 253 B 5 THR B 63 ? ASN B 69 ? THR B 263 ASN B 269 B 6 THR B 76 ? ILE B 85 ? THR B 276 ILE B 285 B 7 GLU B 91 ? ARG B 100 ? GLU B 291 ARG B 300 B 8 THR B 113 ? ARG B 122 ? THR B 313 ARG B 322 B 9 GLY B 8 ? ASN B 12 ? GLY B 208 ASN B 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 10 ? N TRP A 10 O MET A 18 ? O MET A 18 A 2 3 N ASN A 17 ? N ASN A 17 O THR A 34 ? O THR A 34 A 3 4 N TYR A 33 ? N TYR A 33 O SER A 47 ? O SER A 47 A 4 5 N HIS A 50 ? N HIS A 50 O THR A 67 ? O THR A 67 A 5 6 N VAL A 68 ? N VAL A 68 O THR A 77 ? O THR A 77 A 6 7 N THR A 76 ? N THR A 76 O ARG A 100 ? O ARG A 100 A 7 8 N TRP A 97 ? N TRP A 97 O GLY A 116 ? O GLY A 116 A 8 9 O THR A 121 ? O THR A 121 N THR A 11 ? N THR A 11 B 1 2 N TRP B 10 ? N TRP B 210 O MET B 18 ? O MET B 218 B 2 3 N ASN B 17 ? N ASN B 217 O THR B 34 ? O THR B 234 B 3 4 N TYR B 33 ? N TYR B 233 O SER B 47 ? O SER B 247 B 4 5 N THR B 52 ? N THR B 252 O GLY B 65 ? O GLY B 265 B 5 6 N VAL B 68 ? N VAL B 268 O THR B 77 ? O THR B 277 B 6 7 N THR B 76 ? N THR B 276 O ARG B 100 ? O ARG B 300 B 7 8 N LEU B 99 ? N LEU B 299 O ARG B 114 ? O ARG B 314 B 8 9 O THR B 121 ? O THR B 321 N THR B 11 ? N THR B 211 # _database_PDB_matrix.entry_id 1LDO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LDO _atom_sites.fract_transf_matrix[1][1] 0.014064 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023180 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG A 151 HAS WRONG CHIRALITY AT ATOM C1' 2 'NAG B 352 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ARG 124 124 ? ? ? A . n A 1 125 THR 125 125 ? ? ? A . n A 1 126 GLN 126 126 ? ? ? A . n A 1 127 LYS 127 127 ? ? ? A . n A 1 128 GLU 128 128 ? ? ? A . n B 1 1 ALA 1 201 ? ? ? B . n B 1 2 ARG 2 202 ? ? ? B . n B 1 3 LYS 3 203 203 LYS LYS B . n B 1 4 CYS 4 204 204 CYS CYS B . n B 1 5 SER 5 205 205 SER SER B . n B 1 6 LEU 6 206 206 LEU LEU B . n B 1 7 THR 7 207 207 THR THR B . n B 1 8 GLY 8 208 208 GLY GLY B . n B 1 9 LYS 9 209 209 LYS LYS B . n B 1 10 TRP 10 210 210 TRP TRP B . n B 1 11 THR 11 211 211 THR THR B . n B 1 12 ASN 12 212 212 ASN ASN B . n B 1 13 ASP 13 213 213 ASP ASP B . n B 1 14 LEU 14 214 214 LEU LEU B . n B 1 15 GLY 15 215 215 GLY GLY B . n B 1 16 SER 16 216 216 SER SER B . n B 1 17 ASN 17 217 217 ASN ASN B . n B 1 18 MET 18 218 218 MET MET B . n B 1 19 THR 19 219 219 THR THR B . n B 1 20 ILE 20 220 220 ILE ILE B . n B 1 21 GLY 21 221 221 GLY GLY B . n B 1 22 ALA 22 222 222 ALA ALA B . n B 1 23 VAL 23 223 223 VAL VAL B . n B 1 24 ASN 24 224 224 ASN ASN B . n B 1 25 SER 25 225 225 SER SER B . n B 1 26 ARG 26 226 226 ARG ARG B . n B 1 27 GLY 27 227 227 GLY GLY B . n B 1 28 GLU 28 228 228 GLU GLU B . n B 1 29 PHE 29 229 229 PHE PHE B . n B 1 30 THR 30 230 230 THR THR B . n B 1 31 GLY 31 231 231 GLY GLY B . n B 1 32 THR 32 232 232 THR THR B . n B 1 33 TYR 33 233 233 TYR TYR B . n B 1 34 THR 34 234 234 THR THR B . n B 1 35 THR 35 235 235 THR THR B . n B 1 36 ALA 36 236 236 ALA ALA B . n B 1 37 VAL 37 237 237 VAL VAL B . n B 1 38 THR 38 238 238 THR THR B . n B 1 39 ALA 39 239 239 ALA ALA B . n B 1 40 THR 40 240 240 THR THR B . n B 1 41 SER 41 241 241 SER SER B . n B 1 42 ASN 42 242 242 ASN ASN B . n B 1 43 GLU 43 243 243 GLU GLU B . n B 1 44 ILE 44 244 244 ILE ILE B . n B 1 45 LYS 45 245 245 LYS LYS B . n B 1 46 GLU 46 246 246 GLU GLU B . n B 1 47 SER 47 247 247 SER SER B . n B 1 48 PRO 48 248 248 PRO PRO B . n B 1 49 LEU 49 249 249 LEU LEU B . n B 1 50 HIS 50 250 250 HIS HIS B . n B 1 51 GLY 51 251 251 GLY GLY B . n B 1 52 THR 52 252 252 THR THR B . n B 1 53 GLU 53 253 253 GLU GLU B . n B 1 54 ASN 54 254 254 ASN ASN B . n B 1 55 THR 55 255 255 THR THR B . n B 1 56 ILE 56 256 256 ILE ILE B . n B 1 57 ASN 57 257 257 ASN ASN B . n B 1 58 LYS 58 258 258 LYS LYS B . n B 1 59 ARG 59 259 259 ARG ARG B . n B 1 60 THR 60 260 260 THR THR B . n B 1 61 GLN 61 261 261 GLN GLN B . n B 1 62 PRO 62 262 262 PRO PRO B . n B 1 63 THR 63 263 263 THR THR B . n B 1 64 PHE 64 264 264 PHE PHE B . n B 1 65 GLY 65 265 265 GLY GLY B . n B 1 66 PHE 66 266 266 PHE PHE B . n B 1 67 THR 67 267 267 THR THR B . n B 1 68 VAL 68 268 268 VAL VAL B . n B 1 69 ASN 69 269 269 ASN ASN B . n B 1 70 TRP 70 270 270 TRP TRP B . n B 1 71 LYS 71 271 271 LYS LYS B . n B 1 72 PHE 72 272 272 PHE PHE B . n B 1 73 SER 73 273 273 SER SER B . n B 1 74 GLU 74 274 274 GLU GLU B . n B 1 75 SER 75 275 275 SER SER B . n B 1 76 THR 76 276 276 THR THR B . n B 1 77 THR 77 277 277 THR THR B . n B 1 78 VAL 78 278 278 VAL VAL B . n B 1 79 PHE 79 279 279 PHE PHE B . n B 1 80 THR 80 280 280 THR THR B . n B 1 81 GLY 81 281 281 GLY GLY B . n B 1 82 GLN 82 282 282 GLN GLN B . n B 1 83 CYS 83 283 283 CYS CYS B . n B 1 84 PHE 84 284 284 PHE PHE B . n B 1 85 ILE 85 285 285 ILE ILE B . n B 1 86 ASP 86 286 286 ASP ASP B . n B 1 87 ARG 87 287 287 ARG ARG B . n B 1 88 ASN 88 288 288 ASN ASN B . n B 1 89 GLY 89 289 289 GLY GLY B . n B 1 90 LYS 90 290 290 LYS LYS B . n B 1 91 GLU 91 291 291 GLU GLU B . n B 1 92 VAL 92 292 292 VAL VAL B . n B 1 93 LEU 93 293 293 LEU LEU B . n B 1 94 LYS 94 294 294 LYS LYS B . n B 1 95 THR 95 295 295 THR THR B . n B 1 96 MET 96 296 296 MET MET B . n B 1 97 TRP 97 297 297 TRP TRP B . n B 1 98 LEU 98 298 298 LEU LEU B . n B 1 99 LEU 99 299 299 LEU LEU B . n B 1 100 ARG 100 300 300 ARG ARG B . n B 1 101 SER 101 301 301 SER SER B . n B 1 102 SER 102 302 302 SER SER B . n B 1 103 VAL 103 303 303 VAL VAL B . n B 1 104 ASN 104 304 304 ASN ASN B . n B 1 105 ASP 105 305 305 ASP ASP B . n B 1 106 ILE 106 306 306 ILE ILE B . n B 1 107 GLY 107 307 307 GLY GLY B . n B 1 108 ASP 108 308 308 ASP ASP B . n B 1 109 ASP 109 309 309 ASP ASP B . n B 1 110 TRP 110 310 310 TRP TRP B . n B 1 111 LYS 111 311 311 LYS LYS B . n B 1 112 ALA 112 312 312 ALA ALA B . n B 1 113 THR 113 313 313 THR THR B . n B 1 114 ARG 114 314 314 ARG ARG B . n B 1 115 VAL 115 315 315 VAL VAL B . n B 1 116 GLY 116 316 316 GLY GLY B . n B 1 117 ILE 117 317 317 ILE ILE B . n B 1 118 ASN 118 318 318 ASN ASN B . n B 1 119 ILE 119 319 319 ILE ILE B . n B 1 120 PHE 120 320 320 PHE PHE B . n B 1 121 THR 121 321 321 THR THR B . n B 1 122 ARG 122 322 322 ARG ARG B . n B 1 123 LEU 123 323 323 LEU LEU B . n B 1 124 ARG 124 324 ? ? ? B . n B 1 125 THR 125 325 ? ? ? B . n B 1 126 GLN 126 326 ? ? ? B . n B 1 127 LYS 127 327 ? ? ? B . n B 1 128 GLU 128 328 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG 1 151 401 NAG NAG A . D 3 SNR 1 150 150 SNR SNR A . E 2 NAG 1 352 402 NAG NAG B . F 3 SNR 1 350 350 SNR SNR B . G 4 HOH 1 402 402 HOH WAT A . G 4 HOH 2 404 404 HOH WAT A . G 4 HOH 3 405 405 HOH WAT A . G 4 HOH 4 409 409 HOH WAT A . G 4 HOH 5 410 410 HOH WAT A . G 4 HOH 6 411 411 HOH WAT A . G 4 HOH 7 414 414 HOH WAT A . G 4 HOH 8 416 416 HOH WAT A . G 4 HOH 9 417 417 HOH WAT A . G 4 HOH 10 420 420 HOH WAT A . G 4 HOH 11 424 424 HOH WAT A . G 4 HOH 12 425 425 HOH WAT A . G 4 HOH 13 426 426 HOH WAT A . G 4 HOH 14 430 430 HOH WAT A . G 4 HOH 15 434 434 HOH WAT A . G 4 HOH 16 435 435 HOH WAT A . G 4 HOH 17 436 436 HOH WAT A . G 4 HOH 18 437 437 HOH WAT A . G 4 HOH 19 438 438 HOH WAT A . G 4 HOH 20 440 440 HOH WAT A . G 4 HOH 21 441 441 HOH WAT A . G 4 HOH 22 442 442 HOH WAT A . G 4 HOH 23 445 445 HOH WAT A . G 4 HOH 24 446 446 HOH WAT A . G 4 HOH 25 447 447 HOH WAT A . G 4 HOH 26 457 457 HOH WAT A . G 4 HOH 27 459 459 HOH WAT A . G 4 HOH 28 462 462 HOH WAT A . G 4 HOH 29 464 464 HOH WAT A . G 4 HOH 30 465 465 HOH WAT A . G 4 HOH 31 466 466 HOH WAT A . G 4 HOH 32 467 467 HOH WAT A . G 4 HOH 33 468 468 HOH WAT A . G 4 HOH 34 470 470 HOH WAT A . G 4 HOH 35 472 472 HOH WAT A . G 4 HOH 36 473 473 HOH WAT A . G 4 HOH 37 475 475 HOH WAT A . G 4 HOH 38 476 476 HOH WAT A . G 4 HOH 39 481 481 HOH WAT A . G 4 HOH 40 482 482 HOH WAT A . G 4 HOH 41 484 484 HOH WAT A . G 4 HOH 42 485 485 HOH WAT A . G 4 HOH 43 490 490 HOH WAT A . G 4 HOH 44 492 492 HOH WAT A . G 4 HOH 45 497 497 HOH WAT A . G 4 HOH 46 500 500 HOH WAT A . G 4 HOH 47 505 505 HOH WAT A . H 4 HOH 1 401 401 HOH WAT B . H 4 HOH 2 403 403 HOH WAT B . H 4 HOH 3 406 406 HOH WAT B . H 4 HOH 4 407 407 HOH WAT B . H 4 HOH 5 408 408 HOH WAT B . H 4 HOH 6 412 412 HOH WAT B . H 4 HOH 7 413 413 HOH WAT B . H 4 HOH 8 415 415 HOH WAT B . H 4 HOH 9 418 418 HOH WAT B . H 4 HOH 10 419 419 HOH WAT B . H 4 HOH 11 421 421 HOH WAT B . H 4 HOH 12 422 422 HOH WAT B . H 4 HOH 13 423 423 HOH WAT B . H 4 HOH 14 427 427 HOH WAT B . H 4 HOH 15 428 428 HOH WAT B . H 4 HOH 16 429 429 HOH WAT B . H 4 HOH 17 431 431 HOH WAT B . H 4 HOH 18 432 432 HOH WAT B . H 4 HOH 19 433 433 HOH WAT B . H 4 HOH 20 439 439 HOH WAT B . H 4 HOH 21 443 443 HOH WAT B . H 4 HOH 22 444 444 HOH WAT B . H 4 HOH 23 448 448 HOH WAT B . H 4 HOH 24 449 449 HOH WAT B . H 4 HOH 25 450 450 HOH WAT B . H 4 HOH 26 451 451 HOH WAT B . H 4 HOH 27 452 452 HOH WAT B . H 4 HOH 28 453 453 HOH WAT B . H 4 HOH 29 454 454 HOH WAT B . H 4 HOH 30 455 455 HOH WAT B . H 4 HOH 31 456 456 HOH WAT B . H 4 HOH 32 458 458 HOH WAT B . H 4 HOH 33 460 460 HOH WAT B . H 4 HOH 34 461 461 HOH WAT B . H 4 HOH 35 463 463 HOH WAT B . H 4 HOH 36 469 469 HOH WAT B . H 4 HOH 37 471 471 HOH WAT B . H 4 HOH 38 474 474 HOH WAT B . H 4 HOH 39 477 477 HOH WAT B . H 4 HOH 40 478 478 HOH WAT B . H 4 HOH 41 479 479 HOH WAT B . H 4 HOH 42 480 480 HOH WAT B . H 4 HOH 43 483 483 HOH WAT B . H 4 HOH 44 486 486 HOH WAT B . H 4 HOH 45 487 487 HOH WAT B . H 4 HOH 46 488 488 HOH WAT B . H 4 HOH 47 489 489 HOH WAT B . H 4 HOH 48 491 491 HOH WAT B . H 4 HOH 49 493 493 HOH WAT B . H 4 HOH 50 494 494 HOH WAT B . H 4 HOH 51 495 495 HOH WAT B . H 4 HOH 52 496 496 HOH WAT B . H 4 HOH 53 498 498 HOH WAT B . H 4 HOH 54 499 499 HOH WAT B . H 4 HOH 55 501 501 HOH WAT B . H 4 HOH 56 502 502 HOH WAT B . H 4 HOH 57 503 503 HOH WAT B . H 4 HOH 58 504 504 HOH WAT B . H 4 HOH 59 506 506 HOH WAT B . H 4 HOH 60 507 507 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 17 A ASN 17 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 17 B ASN 217 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13540 ? 1 MORE -55 ? 1 'SSA (A^2)' 19210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 79.8130000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-06 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Non-polymer description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_nonpoly_scheme 8 4 'Structure model' pdbx_validate_chiral 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_ref_seq_dif 11 4 'Structure model' struct_site 12 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.auth_comp_id' 7 4 'Structure model' '_atom_site.label_atom_id' 8 4 'Structure model' '_atom_site.label_comp_id' 9 4 'Structure model' '_atom_site.type_symbol' 10 4 'Structure model' '_chem_comp.id' 11 4 'Structure model' '_chem_comp.name' 12 4 'Structure model' '_chem_comp.type' 13 4 'Structure model' '_entity.pdbx_description' 14 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 15 4 'Structure model' '_pdbx_entity_nonpoly.name' 16 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 17 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.pdbx_role' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 309 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 401 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 49 ? ? CB A LEU 49 ? ? CG A LEU 49 ? ? 131.89 115.30 16.59 2.30 N 2 1 CA B LEU 249 ? ? CB B LEU 249 ? ? CG B LEU 249 ? ? 132.33 115.30 17.03 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 258 ? ? 38.15 46.93 2 1 ARG B 259 ? ? -48.74 153.69 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A NAG 151 ? 'WRONG HAND' . 2 1 C1 ? B NAG 352 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A ARG 124 ? A ARG 124 4 1 Y 1 A THR 125 ? A THR 125 5 1 Y 1 A GLN 126 ? A GLN 126 6 1 Y 1 A LYS 127 ? A LYS 127 7 1 Y 1 A GLU 128 ? A GLU 128 8 1 Y 1 B ALA 201 ? B ALA 1 9 1 Y 1 B ARG 202 ? B ARG 2 10 1 Y 1 B ARG 324 ? B ARG 124 11 1 Y 1 B THR 325 ? B THR 125 12 1 Y 1 B GLN 326 ? B GLN 126 13 1 Y 1 B LYS 327 ? B LYS 127 14 1 Y 1 B GLU 328 ? B GLU 128 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 NORBIOTIN SNR 4 water HOH #