data_1LEX # _entry.id 1LEX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LEX pdb_00001lex 10.2210/pdb1lex/pdb RCSB GDL037 ? ? WWPDB D_1000174690 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-03 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LEX _pdbx_database_status.recvd_initial_deposition_date 1995-10-10 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goodsell, D.S.' 1 'Ng, H.L.' 2 'Kopka, M.L.' 3 'Lown, J.W.' 4 'Dickerson, R.E.' 5 # _citation.id primary _citation.title 'Structure of a dicationic monoimidazole lexitropsin bound to DNA.' _citation.journal_abbrev Biochemistry _citation.journal_volume 34 _citation.page_first 16654 _citation.page_last 16661 _citation.year 1995 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8527438 _citation.pdbx_database_id_DOI 10.1021/bi00051a013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goodsell, D.S.' 1 ? primary 'Ng, H.L.' 2 ? primary 'Kopka, M.L.' 3 ? primary 'Lown, J.W.' 4 ? primary 'Dickerson, R.E.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MONOIMIDAZOLE LEXITROPSIN' 431.452 1 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MONOIMIDAZOLE LEXITROPSIN' ILT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 ILT non-polymer . 'MONOIMIDAZOLE LEXITROPSIN' ? 'C17 H25 N11 O3' 431.452 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ILT 1 25 25 ILT ILT B . D 3 HOH 1 31 31 HOH HOH A . D 3 HOH 2 32 32 HOH HOH A . D 3 HOH 3 35 35 HOH HOH A . D 3 HOH 4 37 37 HOH HOH A . D 3 HOH 5 38 38 HOH HOH A . D 3 HOH 6 39 39 HOH HOH A . D 3 HOH 7 46 46 HOH HOH A . D 3 HOH 8 47 47 HOH HOH A . D 3 HOH 9 51 51 HOH HOH A . D 3 HOH 10 52 52 HOH HOH A . D 3 HOH 11 54 54 HOH HOH A . D 3 HOH 12 56 56 HOH HOH A . D 3 HOH 13 57 57 HOH HOH A . D 3 HOH 14 61 61 HOH HOH A . E 3 HOH 1 26 26 HOH HOH B . E 3 HOH 2 27 27 HOH HOH B . E 3 HOH 3 28 28 HOH HOH B . E 3 HOH 4 29 29 HOH HOH B . E 3 HOH 5 30 30 HOH HOH B . E 3 HOH 6 33 33 HOH HOH B . E 3 HOH 7 34 34 HOH HOH B . E 3 HOH 8 36 36 HOH HOH B . E 3 HOH 9 40 40 HOH HOH B . E 3 HOH 10 41 41 HOH HOH B . E 3 HOH 11 42 42 HOH HOH B . E 3 HOH 12 43 43 HOH HOH B . E 3 HOH 13 44 44 HOH HOH B . E 3 HOH 14 45 45 HOH HOH B . E 3 HOH 15 48 48 HOH HOH B . E 3 HOH 16 49 49 HOH HOH B . E 3 HOH 17 50 50 HOH HOH B . E 3 HOH 18 53 53 HOH HOH B . E 3 HOH 19 55 55 HOH HOH B . E 3 HOH 20 58 58 HOH HOH B . E 3 HOH 21 59 59 HOH HOH B . E 3 HOH 22 60 60 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1LEX _cell.length_a 24.030 _cell.length_b 39.260 _cell.length_c 66.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1LEX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.85 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 278.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP, temperature 278.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 248.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1LEX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.250 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1LEX _refine.ls_number_reflns_obs 2322 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs 86.000 _refine.ls_R_factor_obs 0.1650000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2480000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 553 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 5.287 6.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 5.938 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 5.958 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 5.830 6.000 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.025 0.030 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.046 0.040 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.024 0.025 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.066 0.050 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.016 0.020 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.165 0.150 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.097 0.100 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.098 0.100 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1LEX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1LEX _struct.title 'STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LEX _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1LEX _struct_ref.pdbx_db_accession 1LEX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LEX A 1 ? 12 ? 1LEX 1 ? 12 ? 1 12 2 1 1LEX B 1 ? 12 ? 1LEX 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 DNA CHAINS AND 1 MONOIMIDAZOLE LEXITROPSIN MOLECULE. INDEPENDENT REFINEMENTS OF THE STRUCTURE WERE CARRIED OUT WITH THE LEXITROPSIN MOLECULE IN TWO DIFFERENT ORIENTATIONS. IT COULD NOT BE DETERMINED WHICH OF THESE ORIENTATIONS WAS CORRECT. THE TWO SETS OF COORDINATES ARE AVAILABLE IN THE PDB FILES 1LEX AND 1LEY. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ILT 25 ? 12 'BINDING SITE FOR RESIDUE ILT B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 12 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 12 DT A 7 ? DT A 7 . ? 1_555 ? 5 AC1 12 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 12 DC A 9 ? DC A 9 . ? 1_555 ? 7 AC1 12 DA B 5 ? DA B 17 . ? 1_555 ? 8 AC1 12 DA B 6 ? DA B 18 . ? 1_555 ? 9 AC1 12 DT B 7 ? DT B 19 . ? 1_555 ? 10 AC1 12 DT B 8 ? DT B 20 . ? 1_555 ? 11 AC1 12 DC B 9 ? DC B 21 . ? 1_555 ? 12 AC1 12 HOH E . ? HOH B 59 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.383 1.446 -0.063 0.010 N 2 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.426 1.518 -0.092 0.010 N 3 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.324 1.419 -0.095 0.006 N 4 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.367 1.446 -0.079 0.010 N 5 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.458 1.388 0.070 0.006 N 6 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.252 1.305 -0.053 0.006 N 7 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.420 1.374 0.046 0.007 N 8 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.338 1.419 -0.081 0.006 N 9 1 C4 A DT 8 ? ? O4 A DT 8 ? ? 1.291 1.228 0.063 0.009 N 10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.531 1.420 0.111 0.011 N 11 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.334 1.379 -0.045 0.007 N 12 1 C5 A DG 12 ? ? N7 A DG 12 ? ? 1.428 1.388 0.040 0.006 N 13 1 C4 B DG 14 ? ? C5 B DG 14 ? ? 1.333 1.379 -0.046 0.007 N 14 1 C6 B DG 14 ? ? N1 B DG 14 ? ? 1.347 1.391 -0.044 0.007 N 15 1 N7 B DG 14 ? ? C8 B DG 14 ? ? 1.240 1.305 -0.065 0.006 N 16 1 "C2'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.438 1.518 -0.080 0.010 N 17 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.382 1.446 -0.064 0.010 N 18 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.379 1.446 -0.067 0.010 N 19 1 N1 B DA 17 ? ? C2 B DA 17 ? ? 1.398 1.339 0.059 0.009 N 20 1 C2 B DA 17 ? ? N3 B DA 17 ? ? 1.388 1.331 0.057 0.009 N 21 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.429 1.388 0.041 0.006 N 22 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.494 1.420 0.074 0.011 N 23 1 C4 B DT 19 ? ? C5 B DT 19 ? ? 1.382 1.445 -0.063 0.009 N 24 1 "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.443 1.518 -0.075 0.010 N 25 1 C4 B DT 20 ? ? C5 B DT 20 ? ? 1.383 1.445 -0.062 0.009 N 26 1 C6 B DT 20 ? ? N1 B DT 20 ? ? 1.335 1.378 -0.043 0.007 N 27 1 C4 B DT 20 ? ? O4 B DT 20 ? ? 1.295 1.228 0.067 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.90 102.40 -6.50 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.98 105.90 -7.92 0.80 N 3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.25 119.90 3.35 0.50 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.40 121.90 -2.50 0.40 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.82 118.90 3.92 0.60 N 6 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.30 108.00 -5.70 0.70 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.66 128.60 -3.94 0.60 N 8 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 134.78 119.70 15.08 1.20 Y 9 1 "O3'" A DG 2 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 119.74 110.50 9.24 1.10 Y 10 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 106.76 119.60 -12.84 1.50 N 11 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 118.42 110.70 7.72 1.20 N 12 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 101.71 104.50 -2.79 0.40 N 13 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.68 110.10 -7.42 1.00 N 14 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.15 102.40 -6.25 0.80 N 15 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 114.58 106.80 7.78 0.50 N 16 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 123.59 120.30 3.29 0.40 N 17 1 C2 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 111.49 118.80 -7.31 1.10 N 18 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 171.16 119.70 51.46 1.20 Y 19 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.99 109.40 -6.41 0.80 N 20 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 106.43 120.90 -14.47 1.60 N 21 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 96.67 102.40 -5.73 0.80 N 22 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 103.62 108.00 -4.38 0.70 N 23 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.21 128.60 -4.39 0.60 N 24 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 103.83 109.40 -5.57 0.80 N 25 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.28 108.30 1.98 0.30 N 26 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 114.37 117.70 -3.33 0.50 N 27 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 124.24 118.60 5.64 0.60 N 28 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 128.67 119.70 8.97 1.20 Y 29 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 95.88 102.40 -6.52 0.80 N 30 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 124.42 118.60 5.82 0.60 N 31 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.40 129.30 -4.90 0.50 N 32 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.52 117.70 -4.18 0.50 N 33 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 125.32 118.60 6.72 0.60 N 34 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 131.18 119.70 11.48 1.20 Y 35 1 "O3'" A DA 6 ? ? P A DT 7 ? ? "O5'" A DT 7 ? ? 88.33 104.00 -15.67 1.90 Y 36 1 "O3'" A DA 6 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 120.53 110.50 10.03 1.10 Y 37 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 99.72 109.40 -9.68 0.80 N 38 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? "O4'" A DT 7 ? ? 116.83 109.80 7.03 1.10 N 39 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.69 114.60 4.09 0.60 N 40 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.26 127.20 -5.94 0.60 N 41 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.42 115.20 4.22 0.60 N 42 1 C5 A DT 7 ? ? C6 A DT 7 ? ? N1 A DT 7 ? ? 118.40 123.70 -5.30 0.60 N 43 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 119.20 124.90 -5.70 0.70 N 44 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 101.97 110.10 -8.13 1.00 N 45 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 103.72 108.00 -4.28 0.70 N 46 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.33 114.60 3.73 0.60 N 47 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 119.88 127.20 -7.32 0.60 N 48 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 120.68 115.20 5.48 0.60 N 49 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 119.96 123.70 -3.74 0.60 N 50 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 115.56 123.10 -7.54 0.80 N 51 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 126.11 122.30 3.81 0.60 N 52 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 143.28 119.70 23.58 1.20 Y 53 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 118.03 110.70 7.33 1.20 N 54 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 102.66 109.40 -6.74 0.80 N 55 1 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.77 110.10 -6.33 1.00 N 56 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 102.11 108.00 -5.89 0.70 N 57 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.62 108.30 7.32 0.30 N 58 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 114.73 111.50 3.23 0.50 N 59 1 N1 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 122.80 116.20 6.60 0.90 N 60 1 N3 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 113.38 119.90 -6.52 0.70 N 61 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.29 128.60 -5.31 0.60 N 62 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 131.05 119.70 11.35 1.20 Y 63 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 118.85 121.90 -3.05 0.40 N 64 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 123.24 118.00 5.24 0.70 N 65 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 127.03 119.70 7.33 1.20 Y 66 1 P A DG 12 ? ? "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? 139.95 120.90 19.05 1.60 N 67 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 100.32 104.50 -4.18 0.40 N 68 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 122.95 119.90 3.05 0.50 N 69 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 119.02 121.90 -2.88 0.40 N 70 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 129.97 119.70 10.27 1.20 Y 71 1 "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? "C1'" B DG 14 ? ? 94.60 102.40 -7.80 0.80 N 72 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 98.97 105.90 -6.93 0.80 N 73 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 119.16 125.10 -5.94 0.60 N 74 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 130.35 123.90 6.45 0.60 N 75 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 107.83 111.90 -4.07 0.50 N 76 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 107.57 104.30 3.27 0.50 N 77 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.10 128.60 -4.50 0.60 N 78 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 103.18 109.40 -6.22 0.80 N 79 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 110.66 120.90 -10.24 1.60 N 80 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 102.54 108.00 -5.46 0.70 N 81 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.68 108.30 3.38 0.30 N 82 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 127.92 119.70 8.22 1.20 Y 83 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 106.01 119.60 -13.59 1.50 N 84 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 121.59 110.70 10.89 1.20 N 85 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.85 108.30 4.55 0.30 N 86 1 C5 B DA 17 ? ? N7 B DA 17 ? ? C8 B DA 17 ? ? 100.63 103.90 -3.27 0.50 N 87 1 N7 B DA 17 ? ? C8 B DA 17 ? ? N9 B DA 17 ? ? 117.83 113.80 4.03 0.50 N 88 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 130.05 119.70 10.35 1.20 Y 89 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 101.85 104.50 -2.65 0.40 N 90 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 125.74 115.70 10.04 1.20 N 91 1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 97.15 102.40 -5.25 0.80 N 92 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 112.73 108.30 4.43 0.30 N 93 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.38 129.30 -4.92 0.50 N 94 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 132.89 119.70 13.19 1.20 Y 95 1 "O5'" B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 118.96 110.70 8.26 1.20 N 96 1 "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.45 109.40 -6.95 0.80 N 97 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.12 110.10 -7.98 1.00 N 98 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? "C2'" B DT 19 ? ? 98.25 105.90 -7.65 0.80 N 99 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 123.13 127.20 -4.07 0.60 N 100 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.72 115.20 4.52 0.60 N 101 1 OP1 B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 108.36 119.60 -11.24 1.50 N 102 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP1 B DT 20 ? ? 119.26 110.70 8.56 1.20 N 103 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 122.20 110.70 11.50 1.20 N 104 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 111.24 106.80 4.44 0.50 N 105 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 97.00 108.00 -11.00 0.70 N 106 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 121.40 127.20 -5.80 0.60 N 107 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 118.89 115.20 3.69 0.60 N 108 1 C5 B DT 20 ? ? C6 B DT 20 ? ? N1 B DT 20 ? ? 117.45 123.70 -6.25 0.60 N 109 1 N3 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 113.96 119.90 -5.94 0.60 N 110 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.49 122.90 -4.41 0.60 N 111 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 101.24 109.40 -8.16 0.80 N 112 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 101.94 108.00 -6.06 0.70 N 113 1 C6 B DC 21 ? ? N1 B DC 21 ? ? C2 B DC 21 ? ? 122.72 120.30 2.42 0.40 N 114 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DG 22 ? ? 131.00 119.70 11.30 1.20 Y 115 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.32 102.40 -5.08 0.80 N 116 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 98.50 105.90 -7.40 0.80 N 117 1 N3 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 115.35 119.90 -4.55 0.70 N 118 1 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.30 119.90 4.40 0.60 N 119 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 122.96 128.60 -5.64 0.60 N 120 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 138.44 119.60 18.84 1.50 N 121 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 104.13 109.40 -5.27 0.80 N 122 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 113.01 108.30 4.71 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILT N1 N N N 147 ILT N2 N N N 148 ILT C1 C N N 149 ILT N3 N N N 150 ILT C2 C N N 151 ILT C3 C N N 152 ILT O1 O N N 153 ILT N4 N N N 154 ILT C4 C Y N 155 ILT N5 N Y N 156 ILT C6 C Y N 157 ILT C7 C Y N 158 ILT C8 C N N 159 ILT N11 N Y N 160 ILT C9 C N N 161 ILT O2 O N N 162 ILT N6 N N N 163 ILT C10 C Y N 164 ILT C11 C Y N 165 ILT C12 C Y N 166 ILT C13 C Y N 167 ILT N7 N Y N 168 ILT C14 C N N 169 ILT C15 C N N 170 ILT O3 O N N 171 ILT N8 N N N 172 ILT C16 C N N 173 ILT C17 C N N 174 ILT C18 C N N 175 ILT N9 N N N 176 ILT N10 N N N 177 ILT H1 H N N 178 ILT H2 H N N 179 ILT H3 H N N 180 ILT H4 H N N 181 ILT H5 H N N 182 ILT H6 H N N 183 ILT H7 H N N 184 ILT H8 H N N 185 ILT H9 H N N 186 ILT H10 H N N 187 ILT H11 H N N 188 ILT H12 H N N 189 ILT H13 H N N 190 ILT H14 H N N 191 ILT H15 H N N 192 ILT H16 H N N 193 ILT H17 H N N 194 ILT H18 H N N 195 ILT H19 H N N 196 ILT H20 H N N 197 ILT H21 H N N 198 ILT H22 H N N 199 ILT H23 H N N 200 ILT H24 H N N 201 ILT H25 H N N 202 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILT N9 C18 doub N N 152 ILT C18 N10 sing N N 153 ILT C18 C17 sing N N 154 ILT C17 C16 sing N N 155 ILT C16 N8 sing N N 156 ILT O3 C15 doub N N 157 ILT N8 C15 sing N N 158 ILT C15 C12 sing N N 159 ILT C14 N7 sing N N 160 ILT C12 N7 sing Y N 161 ILT C12 C11 doub Y N 162 ILT N7 C13 sing Y N 163 ILT C11 C10 sing Y N 164 ILT C13 C10 doub Y N 165 ILT C10 N6 sing N N 166 ILT N6 C9 sing N N 167 ILT O2 C9 doub N N 168 ILT C9 C6 sing N N 169 ILT C6 N11 doub Y N 170 ILT C6 N5 sing Y N 171 ILT N11 C4 sing Y N 172 ILT C8 N5 sing N N 173 ILT N5 C7 sing Y N 174 ILT C4 C7 doub Y N 175 ILT C4 N4 sing N N 176 ILT N4 C3 sing N N 177 ILT C3 O1 doub N N 178 ILT C3 C2 sing N N 179 ILT C2 N3 sing N N 180 ILT N3 C1 sing N N 181 ILT C1 N2 doub N N 182 ILT C1 N1 sing N N 183 ILT N1 H1 sing N N 184 ILT N1 H2 sing N N 185 ILT N2 H3 sing N N 186 ILT N3 H4 sing N N 187 ILT C2 H5 sing N N 188 ILT C2 H6 sing N N 189 ILT N4 H7 sing N N 190 ILT C7 H8 sing N N 191 ILT C8 H9 sing N N 192 ILT C8 H10 sing N N 193 ILT C8 H11 sing N N 194 ILT N6 H12 sing N N 195 ILT C11 H13 sing N N 196 ILT C13 H14 sing N N 197 ILT C14 H15 sing N N 198 ILT C14 H16 sing N N 199 ILT C14 H17 sing N N 200 ILT N8 H18 sing N N 201 ILT C16 H19 sing N N 202 ILT C16 H20 sing N N 203 ILT C17 H21 sing N N 204 ILT C17 H22 sing N N 205 ILT N9 H23 sing N N 206 ILT N10 H24 sing N N 207 ILT N10 H25 sing N N 208 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LEX 'double helix' 1LEX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.100 0.054 0.050 2.800 -13.833 -1.895 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.863 -0.709 0.416 2.315 -8.336 -3.854 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.013 -0.102 0.862 -18.855 -7.251 3.596 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.485 -0.035 0.056 9.605 -5.049 3.025 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.791 -0.370 -0.031 3.777 -13.039 -0.060 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.262 -0.059 0.094 -5.697 -16.719 4.006 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.006 -0.254 0.014 -3.977 -20.543 3.436 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.609 -0.177 0.113 -4.817 -22.291 9.539 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.049 -0.428 -0.272 -3.762 -11.818 -0.580 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.543 -0.442 0.330 10.121 -3.003 1.666 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 1.071 -0.750 0.331 6.600 -21.109 -2.601 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.677 -0.433 0.162 8.476 22.716 1.983 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.256 -0.036 3.390 -4.214 9.643 31.017 -1.801 -0.305 3.241 17.415 7.610 32.712 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.794 0.502 3.964 -1.297 -8.091 44.665 1.509 -1.167 3.799 -10.541 1.689 45.372 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.105 0.538 2.661 6.608 9.024 26.118 -0.648 1.491 2.598 18.903 -13.842 28.374 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.141 0.317 3.498 0.931 3.080 41.256 0.095 0.306 3.508 4.363 -1.319 41.375 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.005 -0.307 3.476 -2.345 7.012 31.972 -1.813 -0.433 3.327 12.522 4.188 32.795 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.022 -0.511 3.190 2.244 -5.038 37.300 -0.148 0.252 3.225 -7.824 -3.485 37.691 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.362 -0.032 3.178 0.461 4.611 29.642 -0.985 -0.607 3.142 8.945 -0.894 29.995 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.315 0.762 3.410 2.750 -1.257 42.013 1.195 0.732 3.361 -1.751 -3.829 42.117 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.336 1.090 3.160 -5.634 6.422 25.941 0.715 -2.111 3.191 13.836 12.139 27.288 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.298 0.959 3.683 -2.417 -13.172 51.644 1.995 1.278 3.415 -14.837 2.723 53.236 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.524 0.348 3.455 2.363 -10.201 27.638 2.981 -2.460 3.241 -20.448 -4.737 29.519 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1LEX _atom_sites.fract_transf_matrix[1][1] 0.041614 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025471 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015083 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_