HEADER HYDROLASE 17-APR-02 1LI4 TITLE HUMAN S-ADENOSYLHOMOCYSTEINE HYDROLASE COMPLEXED WITH NEPLANOCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLHOMOCYSTEINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPROKCD20 KEYWDS ALPHA-BETA STRUCTURE, INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,Y.HU,D.H.YIN,M.A.TURNER,M.WANG,R.T.BORCHARDT,P.L.HOWELL, AUTHOR 2 K.KUCZERA,R.L.SCHOWEN REVDAT 4 16-AUG-23 1LI4 1 REMARK REVDAT 3 13-JUL-11 1LI4 1 VERSN REVDAT 2 24-FEB-09 1LI4 1 VERSN REVDAT 1 20-MAY-03 1LI4 0 JRNL AUTH X.YANG,Y.HU,D.H.YIN,M.A.TURNER,M.WANG,R.T.BORCHARDT, JRNL AUTH 2 P.L.HOWELL,K.KUCZERA,R.L.SCHOWEN JRNL TITL CATALYTIC STRATEGY OF S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE: JRNL TITL 2 TRANSITION-STATE STABILIZATION AND THE AVOIDANCE OF ABORTIVE JRNL TITL 3 REACTIONS JRNL REF BIOCHEMISTRY V. 42 1900 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12590576 JRNL DOI 10.1021/BI0262350 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 814101.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 34435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3434 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4372 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 491 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.44000 REMARK 3 B22 (A**2) : -5.68000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 62.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NOV19NAHNEP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NOV19NAHNEP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : COLLIMATING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ID 1A7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, IOSPROPANOL, AMMONIUM ACETATE, REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TETRAMER WHICH CAN BE GENERATED USING REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY OPERATORS: -X, -Y, Z; -X, Y, -Z; X, - REMARK 300 Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.83000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.83000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 171.49000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 171.49000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 7 171.47 173.92 REMARK 500 ASP A 11 104.31 -166.00 REMARK 500 MET A 29 63.94 -119.26 REMARK 500 LYS A 43 55.16 38.91 REMARK 500 HIS A 55 116.93 -15.93 REMARK 500 ALA A 95 1.06 -67.02 REMARK 500 ASP A 122 52.78 -99.75 REMARK 500 LYS A 186 -70.66 -109.94 REMARK 500 PHE A 189 -61.52 -126.99 REMARK 500 LEU A 192 -73.83 -83.96 REMARK 500 ASP A 208 18.45 57.13 REMARK 500 ALA A 350 -148.58 -143.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 100 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOC A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 901 DBREF 1LI4 A 1 432 UNP P23526 SAHH_HUMAN 1 432 SEQRES 1 A 432 MET SER ASP LYS LEU PRO TYR LYS VAL ALA ASP ILE GLY SEQRES 2 A 432 LEU ALA ALA TRP GLY ARG LYS ALA LEU ASP ILE ALA GLU SEQRES 3 A 432 ASN GLU MET PRO GLY LEU MET ARG MET ARG GLU ARG TYR SEQRES 4 A 432 SER ALA SER LYS PRO LEU LYS GLY ALA ARG ILE ALA GLY SEQRES 5 A 432 CYS LEU HIS MET THR VAL GLU THR ALA VAL LEU ILE GLU SEQRES 6 A 432 THR LEU VAL THR LEU GLY ALA GLU VAL GLN TRP SER SER SEQRES 7 A 432 CYS ASN ILE PHE SER THR GLN ASP HIS ALA ALA ALA ALA SEQRES 8 A 432 ILE ALA LYS ALA GLY ILE PRO VAL TYR ALA TRP LYS GLY SEQRES 9 A 432 GLU THR ASP GLU GLU TYR LEU TRP CYS ILE GLU GLN THR SEQRES 10 A 432 LEU TYR PHE LYS ASP GLY PRO LEU ASN MET ILE LEU ASP SEQRES 11 A 432 ASP GLY GLY ASP LEU THR ASN LEU ILE HIS THR LYS TYR SEQRES 12 A 432 PRO GLN LEU LEU PRO GLY ILE ARG GLY ILE SER GLU GLU SEQRES 13 A 432 THR THR THR GLY VAL HIS ASN LEU TYR LYS MET MET ALA SEQRES 14 A 432 ASN GLY ILE LEU LYS VAL PRO ALA ILE ASN VAL ASN ASP SEQRES 15 A 432 SER VAL THR LYS SER LYS PHE ASP ASN LEU TYR GLY CYS SEQRES 16 A 432 ARG GLU SER LEU ILE ASP GLY ILE LYS ARG ALA THR ASP SEQRES 17 A 432 VAL MET ILE ALA GLY LYS VAL ALA VAL VAL ALA GLY TYR SEQRES 18 A 432 GLY ASP VAL GLY LYS GLY CYS ALA GLN ALA LEU ARG GLY SEQRES 19 A 432 PHE GLY ALA ARG VAL ILE ILE THR GLU ILE ASP PRO ILE SEQRES 20 A 432 ASN ALA LEU GLN ALA ALA MET GLU GLY TYR GLU VAL THR SEQRES 21 A 432 THR MET ASP GLU ALA CYS GLN GLU GLY ASN ILE PHE VAL SEQRES 22 A 432 THR THR THR GLY CYS ILE ASP ILE ILE LEU GLY ARG HIS SEQRES 23 A 432 PHE GLU GLN MET LYS ASP ASP ALA ILE VAL CYS ASN ILE SEQRES 24 A 432 GLY HIS PHE ASP VAL GLU ILE ASP VAL LYS TRP LEU ASN SEQRES 25 A 432 GLU ASN ALA VAL GLU LYS VAL ASN ILE LYS PRO GLN VAL SEQRES 26 A 432 ASP ARG TYR ARG LEU LYS ASN GLY ARG ARG ILE ILE LEU SEQRES 27 A 432 LEU ALA GLU GLY ARG LEU VAL ASN LEU GLY CYS ALA MET SEQRES 28 A 432 GLY HIS PRO SER PHE VAL MET SER ASN SER PHE THR ASN SEQRES 29 A 432 GLN VAL MET ALA GLN ILE GLU LEU TRP THR HIS PRO ASP SEQRES 30 A 432 LYS TYR PRO VAL GLY VAL HIS PHE LEU PRO LYS LYS LEU SEQRES 31 A 432 ASP GLU ALA VAL ALA GLU ALA HIS LEU GLY LYS LEU ASN SEQRES 32 A 432 VAL LYS LEU THR LYS LEU THR GLU LYS GLN ALA GLN TYR SEQRES 33 A 432 LEU GLY MET SER CYS ASP GLY PRO PHE LYS PRO ASP HIS SEQRES 34 A 432 TYR ARG TYR HET NAD A 433 44 HET NOC A 434 19 HET IPA A 900 4 HET IPA A 901 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NOC 3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1, HETNAM 2 NOC 2-DIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN NOC NEPLANOCIN HETSYN IPA 2-PROPANOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 NOC C11 H15 N5 O3 FORMUL 4 IPA 2(C3 H8 O) FORMUL 6 HOH *213(H2 O) HELIX 1 1 ASP A 11 GLY A 13 5 3 HELIX 2 2 LEU A 14 ASN A 27 1 14 HELIX 3 3 MET A 29 SER A 40 1 12 HELIX 4 4 THR A 57 LEU A 70 1 14 HELIX 5 5 GLN A 85 ALA A 95 1 11 HELIX 6 6 THR A 106 GLN A 116 1 11 HELIX 7 7 GLY A 133 TYR A 143 1 11 HELIX 8 8 PRO A 144 ILE A 150 5 7 HELIX 9 9 THR A 157 ASN A 170 1 14 HELIX 10 10 SER A 183 LYS A 188 1 6 HELIX 11 11 PHE A 189 ASP A 208 1 20 HELIX 12 12 GLY A 222 PHE A 235 1 14 HELIX 13 13 ASP A 245 GLU A 255 1 11 HELIX 14 14 THR A 261 CYS A 266 1 6 HELIX 15 15 LEU A 283 GLU A 288 1 6 HELIX 16 16 ASP A 307 ALA A 315 1 9 HELIX 17 17 GLU A 341 ARG A 343 5 3 HELIX 18 18 LEU A 344 CYS A 349 1 6 HELIX 19 19 PRO A 354 HIS A 375 1 22 HELIX 20 20 PRO A 376 TYR A 379 5 4 HELIX 21 21 PRO A 387 GLY A 400 1 14 HELIX 22 22 THR A 410 GLY A 418 1 9 SHEET 1 A 8 LYS A 8 VAL A 9 0 SHEET 2 A 8 VAL A 99 ALA A 101 1 O VAL A 99 N LYS A 8 SHEET 3 A 8 GLU A 73 SER A 77 1 N TRP A 76 O TYR A 100 SHEET 4 A 8 ARG A 49 CYS A 53 1 N GLY A 52 O GLN A 75 SHEET 5 A 8 MET A 127 ASP A 130 1 O MET A 127 N ALA A 51 SHEET 6 A 8 GLY A 152 GLU A 155 1 O SER A 154 N ASP A 130 SHEET 7 A 8 PRO A 176 ASN A 179 1 O ILE A 178 N ILE A 153 SHEET 8 A 8 GLY A 382 HIS A 384 1 O HIS A 384 N ALA A 177 SHEET 1 B 2 TYR A 119 PHE A 120 0 SHEET 2 B 2 GLY A 123 PRO A 124 -1 O GLY A 123 N PHE A 120 SHEET 1 C 8 GLU A 258 VAL A 259 0 SHEET 2 C 8 ARG A 238 THR A 242 1 N ILE A 241 O GLU A 258 SHEET 3 C 8 VAL A 215 ALA A 219 1 N ALA A 216 O ILE A 240 SHEET 4 C 8 ILE A 271 THR A 274 1 O ILE A 271 N VAL A 217 SHEET 5 C 8 ALA A 294 ASN A 298 1 O ILE A 295 N PHE A 272 SHEET 6 C 8 ARG A 335 LEU A 339 1 O ILE A 337 N VAL A 296 SHEET 7 C 8 VAL A 325 ARG A 329 -1 N ASP A 326 O LEU A 338 SHEET 8 C 8 GLU A 317 LYS A 322 -1 N VAL A 319 O ARG A 327 CISPEP 1 GLY A 423 PRO A 424 0 -2.20 SITE 1 AC1 32 THR A 157 THR A 158 THR A 159 ASP A 190 SITE 2 AC1 32 ASN A 191 GLY A 220 GLY A 222 ASP A 223 SITE 3 AC1 32 VAL A 224 THR A 242 GLU A 243 ILE A 244 SITE 4 AC1 32 ASP A 245 ASN A 248 THR A 275 THR A 276 SITE 5 AC1 32 CYS A 278 ILE A 281 ILE A 299 GLY A 300 SITE 6 AC1 32 HIS A 301 LEU A 344 ASN A 346 HIS A 353 SITE 7 AC1 32 LYS A 426 TYR A 430 NOC A 434 HOH A 903 SITE 8 AC1 32 HOH A 929 HOH A 930 HOH A 938 HOH A 998 SITE 1 AC2 16 HIS A 55 THR A 57 GLU A 59 THR A 60 SITE 2 AC2 16 ASP A 131 GLU A 156 THR A 157 LYS A 186 SITE 3 AC2 16 ASP A 190 HIS A 301 MET A 351 GLY A 352 SITE 4 AC2 16 HIS A 353 MET A 358 PHE A 362 NAD A 433 SITE 1 AC3 6 ARG A 238 ALA A 253 TYR A 257 VAL A 259 SITE 2 AC3 6 LEU A 402 HOH A1039 SITE 1 AC4 3 GLN A 85 ASP A 86 HIS A 87 CRYST1 92.830 135.670 171.490 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005831 0.00000