HEADER METAL BINDING PROTEIN 25-APR-02 1LKJ TITLE NMR STRUCTURE OF APO CALMODULIN FROM YEAST SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS YEAST CALMODULIN, SACCHAROMYCES CEREVISIAE, EF-HAND, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 31 AUTHOR H.ISHIDA,K.NAKASHIMA,Y.KUMAKI,M.NAKATA,K.HIKICHI,M.YAZAWA REVDAT 4 29-MAY-24 1LKJ 1 REMARK REVDAT 3 23-FEB-22 1LKJ 1 REMARK REVDAT 2 24-FEB-09 1LKJ 1 VERSN REVDAT 1 29-APR-03 1LKJ 0 JRNL AUTH H.ISHIDA,K.NAKASHIMA,Y.KUMAKI,M.NAKATA,K.HIKICHI,M.YAZAWA JRNL TITL THE SOLUTION STRUCTURE OF APOCALMODULIN FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE IMPLIES A MECHANISM FOR ITS UNIQUE CA2+ BINDING JRNL TITL 3 PROPERTY. JRNL REF BIOCHEMISTRY V. 41 15536 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12501182 JRNL DOI 10.1021/BI020330R REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851, X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER, A. T. (X-PLOR), BRUNGER, A. T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LKJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000016030. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0-1.4MM YEAST CALMUDULIN U REMARK 210 -15N,13C; 50MM KCL; 1.0-1.4MM REMARK 210 YEAST CALMUDULIN U-15N; 50MM KCL; REMARK 210 1.0-1.4MM YEAST CALMODULIN; REMARK 210 50MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 4D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : A; UNITY REMARK 210 SPECTROMETER MANUFACTURER : JEOL; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 21 52.68 -118.71 REMARK 500 1 ASP A 22 -98.55 -128.80 REMARK 500 1 ASN A 23 34.08 -174.43 REMARK 500 1 ASN A 24 -75.02 -150.06 REMARK 500 1 SER A 42 64.03 -168.66 REMARK 500 1 LEU A 76 47.89 -95.53 REMARK 500 1 SER A 78 50.58 -167.21 REMARK 500 1 ASP A 80 97.66 -167.85 REMARK 500 1 THR A 117 -167.25 -63.05 REMARK 500 1 SER A 132 -67.92 -132.20 REMARK 500 1 SER A 145 -73.70 -102.61 REMARK 500 2 LYS A 21 67.42 -103.37 REMARK 500 2 ASP A 22 -75.23 -138.41 REMARK 500 2 ASN A 23 -59.90 -164.95 REMARK 500 2 SER A 42 68.66 -168.89 REMARK 500 2 HIS A 61 108.50 56.68 REMARK 500 2 LYS A 77 -158.81 41.36 REMARK 500 2 SER A 78 -52.27 -168.38 REMARK 500 2 LYS A 94 41.17 -108.88 REMARK 500 2 ASN A 95 -43.30 -158.30 REMARK 500 2 THR A 117 -174.17 -62.98 REMARK 500 3 ASN A 3 -170.79 52.56 REMARK 500 3 LYS A 21 -92.74 -79.33 REMARK 500 3 ASP A 22 43.52 -173.07 REMARK 500 3 ASN A 23 -63.76 -101.97 REMARK 500 3 ASN A 24 27.52 -150.57 REMARK 500 3 SER A 42 68.79 -166.34 REMARK 500 3 ASP A 56 92.18 -58.55 REMARK 500 3 ASP A 58 -150.89 -127.43 REMARK 500 3 ASN A 79 42.61 -106.58 REMARK 500 3 ASN A 95 -59.85 -134.32 REMARK 500 4 ASN A 23 25.79 -151.18 REMARK 500 4 ASN A 24 -86.62 55.44 REMARK 500 4 SER A 42 67.19 -167.35 REMARK 500 4 ASP A 56 94.32 -64.59 REMARK 500 4 HIS A 61 116.61 -167.17 REMARK 500 4 ASP A 80 43.89 -158.61 REMARK 500 4 ASP A 130 -37.98 -169.96 REMARK 500 4 SER A 132 -58.40 -124.89 REMARK 500 5 SER A 2 -63.84 -98.84 REMARK 500 5 LYS A 21 -90.47 -64.94 REMARK 500 5 ASP A 22 35.89 -175.79 REMARK 500 5 ASN A 23 -66.19 -151.48 REMARK 500 5 SER A 42 68.21 -167.72 REMARK 500 5 ILE A 55 -62.49 -94.02 REMARK 500 5 LEU A 76 46.48 -92.50 REMARK 500 5 LYS A 77 -158.12 -61.62 REMARK 500 5 SER A 78 89.30 -60.40 REMARK 500 5 SER A 81 -70.46 -59.98 REMARK 500 5 LYS A 94 -65.36 66.15 REMARK 500 REMARK 500 THIS ENTRY HAS 349 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.20 SIDE CHAIN REMARK 500 1 ARG A 74 0.22 SIDE CHAIN REMARK 500 1 ARG A 126 0.32 SIDE CHAIN REMARK 500 2 ARG A 37 0.26 SIDE CHAIN REMARK 500 2 ARG A 74 0.28 SIDE CHAIN REMARK 500 2 ARG A 126 0.22 SIDE CHAIN REMARK 500 3 ARG A 37 0.24 SIDE CHAIN REMARK 500 3 ARG A 74 0.21 SIDE CHAIN REMARK 500 3 ARG A 126 0.32 SIDE CHAIN REMARK 500 4 ARG A 37 0.31 SIDE CHAIN REMARK 500 4 ARG A 74 0.24 SIDE CHAIN REMARK 500 4 ARG A 126 0.30 SIDE CHAIN REMARK 500 5 ARG A 37 0.23 SIDE CHAIN REMARK 500 5 ARG A 74 0.30 SIDE CHAIN REMARK 500 5 ARG A 126 0.31 SIDE CHAIN REMARK 500 6 ARG A 37 0.30 SIDE CHAIN REMARK 500 6 ARG A 74 0.22 SIDE CHAIN REMARK 500 6 ARG A 126 0.22 SIDE CHAIN REMARK 500 7 ARG A 37 0.28 SIDE CHAIN REMARK 500 7 ARG A 74 0.22 SIDE CHAIN REMARK 500 7 ARG A 126 0.22 SIDE CHAIN REMARK 500 8 ARG A 37 0.31 SIDE CHAIN REMARK 500 8 ARG A 74 0.29 SIDE CHAIN REMARK 500 8 ARG A 126 0.25 SIDE CHAIN REMARK 500 9 ARG A 37 0.32 SIDE CHAIN REMARK 500 9 ARG A 74 0.26 SIDE CHAIN REMARK 500 9 ARG A 126 0.22 SIDE CHAIN REMARK 500 10 ARG A 37 0.26 SIDE CHAIN REMARK 500 10 ARG A 74 0.32 SIDE CHAIN REMARK 500 10 ARG A 126 0.25 SIDE CHAIN REMARK 500 11 ARG A 37 0.25 SIDE CHAIN REMARK 500 11 ARG A 74 0.24 SIDE CHAIN REMARK 500 11 ARG A 126 0.26 SIDE CHAIN REMARK 500 12 ARG A 37 0.23 SIDE CHAIN REMARK 500 12 ARG A 74 0.31 SIDE CHAIN REMARK 500 12 ARG A 126 0.27 SIDE CHAIN REMARK 500 13 ARG A 37 0.21 SIDE CHAIN REMARK 500 13 ARG A 74 0.32 SIDE CHAIN REMARK 500 13 ARG A 126 0.31 SIDE CHAIN REMARK 500 14 ARG A 37 0.31 SIDE CHAIN REMARK 500 14 ARG A 74 0.27 SIDE CHAIN REMARK 500 14 ARG A 126 0.31 SIDE CHAIN REMARK 500 15 ARG A 37 0.29 SIDE CHAIN REMARK 500 15 ARG A 74 0.21 SIDE CHAIN REMARK 500 15 ARG A 126 0.27 SIDE CHAIN REMARK 500 16 ARG A 37 0.26 SIDE CHAIN REMARK 500 16 ARG A 74 0.22 SIDE CHAIN REMARK 500 16 ARG A 126 0.23 SIDE CHAIN REMARK 500 17 ARG A 37 0.27 SIDE CHAIN REMARK 500 17 ARG A 74 0.30 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 93 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F54 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE APO N-TERMINAL DOMAIN OF YEAST CALMODULIN REMARK 900 RELATED ID: 1F55 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE CALCIUM BOUND N-TERMINAL DOMAIN OF YEAST REMARK 900 CALMODULIN DBREF 1LKJ A 1 146 UNP P06787 CALM_YEAST 2 147 SEQRES 1 A 146 SER SER ASN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 146 GLU ALA PHE ALA LEU PHE ASP LYS ASP ASN ASN GLY SER SEQRES 3 A 146 ILE SER SER SER GLU LEU ALA THR VAL MET ARG SER LEU SEQRES 4 A 146 GLY LEU SER PRO SER GLU ALA GLU VAL ASN ASP LEU MET SEQRES 5 A 146 ASN GLU ILE ASP VAL ASP GLY ASN HIS GLN ILE GLU PHE SEQRES 6 A 146 SER GLU PHE LEU ALA LEU MET SER ARG GLN LEU LYS SER SEQRES 7 A 146 ASN ASP SER GLU GLN GLU LEU LEU GLU ALA PHE LYS VAL SEQRES 8 A 146 PHE ASP LYS ASN GLY ASP GLY LEU ILE SER ALA ALA GLU SEQRES 9 A 146 LEU LYS HIS VAL LEU THR SER ILE GLY GLU LYS LEU THR SEQRES 10 A 146 ASP ALA GLU VAL ASP ASP MET LEU ARG GLU VAL SER ASP SEQRES 11 A 146 GLY SER GLY GLU ILE ASN ILE GLN GLN PHE ALA ALA LEU SEQRES 12 A 146 LEU SER LYS HELIX 1 1 THR A 5 ASP A 20 1 16 HELIX 2 2 SER A 29 GLY A 40 1 12 HELIX 3 3 SER A 44 ASP A 56 1 13 HELIX 4 4 PHE A 65 LEU A 76 1 12 HELIX 5 5 ASP A 80 ASP A 93 1 14 HELIX 6 6 ALA A 102 GLY A 113 1 12 HELIX 7 7 THR A 117 SER A 129 1 13 HELIX 8 8 ILE A 137 SER A 145 1 9 SHEET 1 A 2 SER A 26 SER A 28 0 SHEET 2 A 2 GLN A 62 GLU A 64 -1 O ILE A 63 N ILE A 27 SHEET 1 B 2 LEU A 99 SER A 101 0 SHEET 2 B 2 GLU A 134 ASN A 136 -1 O ILE A 135 N ILE A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1