HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-APR-02 1LKN TITLE SOLUTION NMR STRUCTURE OF PROTEIN TM_1112 FROM THERMOTOGA MARITIMA. TITLE 2 ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET TM1112_1_89; TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VT74. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TM1112; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3(MAGIC GOLD); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BETA BARREL, STRUCTURAL GENOMICS, OCSP, NESG, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.XIA,A.YEE,A.SEMESI,C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (NESG) REVDAT 6 22-MAY-24 1LKN 1 REMARK REVDAT 5 23-FEB-22 1LKN 1 REMARK REVDAT 4 24-FEB-09 1LKN 1 VERSN REVDAT 3 25-JAN-05 1LKN 1 AUTHOR KEYWDS REVDAT 2 12-OCT-04 1LKN 1 KEYWDS REMARK TITLE REVDAT 1 24-JUN-03 1LKN 0 JRNL AUTH Y.XIA,A.YEE,A.SEMESI,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF HYPOTHETICAL PROTEIN TM1112 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, ARIA BASED ON XPLOR3.851 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), M. NILGES, A.T. BRUNGER REMARK 3 (ARIA BASED ON XPLOR3.851) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 2619 RESTRAINTS, IN WHICH REMARK 3 2508 ARE NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 111 ARE DIHEDRAL ANGLE RESTRAINTS FROM TALOS REMARK 3 ANALYSIS AND HNHA REMARK 3 EXPERIMENT. REMARK 4 REMARK 4 1LKN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000016032. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20UM ZN2+ REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM TM1112 U-15N,13C; 25MM REMARK 210 PHOSPHATE BUFFER NA; 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C/15N-SEPARATED_NOESY; REMARK 210 3D_15N/15N-SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY SPARKY 3, ARIA BASED ON REMARK 210 XPLOR3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED,BACK CALCULATED DATA REMARK 210 AGREE WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 42 H HIS A 85 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 TYR A 35 CE1 TYR A 35 CZ 0.078 REMARK 500 10 TYR A 35 CZ TYR A 35 CE2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 -30.62 -37.37 REMARK 500 1 SER A 17 88.02 -28.68 REMARK 500 1 PRO A 22 -179.73 -53.74 REMARK 500 1 VAL A 28 62.97 -53.73 REMARK 500 1 SER A 29 -155.86 -94.93 REMARK 500 1 ASP A 36 26.16 -159.45 REMARK 500 1 THR A 37 141.56 170.31 REMARK 500 1 ASN A 38 93.61 -58.40 REMARK 500 1 GLU A 45 100.79 177.15 REMARK 500 1 LYS A 62 110.82 47.65 REMARK 500 1 PRO A 81 121.23 -34.53 REMARK 500 1 ASN A 87 73.24 -164.07 REMARK 500 2 PRO A 10 -30.13 -39.47 REMARK 500 2 SER A 17 88.65 -29.59 REMARK 500 2 PRO A 22 179.24 -49.90 REMARK 500 2 VAL A 28 45.57 -63.57 REMARK 500 2 GLU A 45 100.68 -169.55 REMARK 500 2 LYS A 62 115.77 49.78 REMARK 500 2 LEU A 72 93.39 -45.18 REMARK 500 2 PRO A 81 118.45 -35.07 REMARK 500 2 ASN A 87 54.19 -157.50 REMARK 500 3 GLU A 2 39.13 -174.50 REMARK 500 3 SER A 17 89.51 -26.22 REMARK 500 3 PRO A 22 -171.55 -52.38 REMARK 500 3 VAL A 28 43.22 26.54 REMARK 500 3 ASP A 36 20.14 -152.35 REMARK 500 3 GLU A 45 106.29 -172.03 REMARK 500 3 LYS A 62 106.71 58.57 REMARK 500 3 ASN A 87 73.43 -151.27 REMARK 500 4 PRO A 10 -29.64 -39.71 REMARK 500 4 SER A 17 88.66 -29.10 REMARK 500 4 PRO A 22 174.54 -48.32 REMARK 500 4 VAL A 28 47.65 -64.34 REMARK 500 4 ASP A 36 17.73 -152.09 REMARK 500 4 GLU A 45 137.05 179.16 REMARK 500 4 LYS A 62 111.59 25.77 REMARK 500 4 LEU A 72 91.53 -46.84 REMARK 500 4 PRO A 81 117.79 -35.01 REMARK 500 4 ASN A 87 60.56 -170.86 REMARK 500 5 SER A 17 88.28 -29.50 REMARK 500 5 PRO A 22 -174.62 -51.16 REMARK 500 5 VAL A 28 59.11 -49.06 REMARK 500 5 SER A 29 -158.65 -95.51 REMARK 500 5 ASP A 36 21.43 -150.15 REMARK 500 5 ASN A 38 97.12 -69.92 REMARK 500 5 GLU A 45 104.65 -171.87 REMARK 500 5 LYS A 62 110.82 30.96 REMARK 500 5 LYS A 70 107.96 -44.09 REMARK 500 5 PRO A 81 107.89 -42.37 REMARK 500 5 ASN A 87 57.05 -150.10 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VT74 RELATED DB: TARGETDB DBREF 1LKN A 1 89 UNP Q9X0J6 Q9X0J6_THEMA 1 89 SEQRES 1 A 89 MET GLU VAL LYS ILE GLU LYS PRO THR PRO GLU LYS LEU SEQRES 2 A 89 LYS GLU LEU SER VAL GLU LYS TRP PRO ILE TRP GLU LYS SEQRES 3 A 89 GLU VAL SER GLU PHE ASP TRP TYR TYR ASP THR ASN GLU SEQRES 4 A 89 THR CYS TYR ILE LEU GLU GLY LYS VAL GLU VAL THR THR SEQRES 5 A 89 GLU ASP GLY LYS LYS TYR VAL ILE GLU LYS GLY ASP LEU SEQRES 6 A 89 VAL THR PHE PRO LYS GLY LEU ARG CYS ARG TRP LYS VAL SEQRES 7 A 89 LEU GLU PRO VAL ARG LYS HIS TYR ASN LEU PHE HELIX 1 1 THR A 9 LEU A 16 1 8 HELIX 2 2 SER A 17 TRP A 21 5 5 SHEET 1 A 8 ILE A 23 LYS A 26 0 SHEET 2 A 8 ARG A 73 LEU A 88 -1 N VAL A 82 O LYS A 26 SHEET 3 A 8 GLU A 30 TYR A 34 -1 O PHE A 31 N TRP A 76 SHEET 4 A 8 ARG A 73 LEU A 88 -1 O CYS A 74 N TRP A 33 SHEET 5 A 8 GLU A 39 THR A 52 -1 N THR A 40 O ASN A 87 SHEET 6 A 8 LYS A 57 GLU A 61 -1 O TYR A 58 N VAL A 50 SHEET 7 A 8 GLU A 39 THR A 52 -1 O VAL A 48 N ILE A 60 SHEET 8 A 8 LEU A 65 THR A 67 -1 N VAL A 66 O CYS A 41 CISPEP 1 THR A 9 PRO A 10 9 10.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1