HEADER HYDROLASE 30-APR-02 1LM4 TITLE STRUCTURE OF PEPTIDE DEFORMYLASE FROM STAPHYLOCOCCUS AUREUS AT 1.45 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE PDF1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.88; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: PDF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMH1 KEYWDS PDF, METALLOENZYME, STAPHYLOCOCCUS AUREUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KREUSCH,G.SPRAGGON,C.C.LEE,H.KLOCK,D.MCMULLAN,K.NG,T.SHIN, AUTHOR 2 J.VINCENT,I.WARNER,C.ERICSON,S.A.LESLEY REVDAT 6 15-NOV-23 1LM4 1 REMARK REVDAT 5 16-AUG-23 1LM4 1 REMARK SEQADV LINK REVDAT 4 12-NOV-14 1LM4 1 HETATM HETNAM LINK MODRES REVDAT 3 13-JUL-11 1LM4 1 VERSN REVDAT 2 24-FEB-09 1LM4 1 VERSN REVDAT 1 24-JUN-03 1LM4 0 JRNL AUTH A.KREUSCH,G.SPRAGGON,C.C.LEE,H.KLOCK,D.MCMULLAN,K.NG,T.SHIN, JRNL AUTH 2 J.VINCENT,I.WARNER,C.ERICSON,S.A.LESLEY JRNL TITL STRUCTURE ANALYSIS OF PEPTIDE DEFORMYLASES FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE,STAPHYLOCOCCUS AUREUS, THERMOTOGA JRNL TITL 3 MARITIMA, AND PSEUDOMONAS AERUGINOSA: SNAPSHOTS OF THE JRNL TITL 4 OXYGEN SENSITIVITY OF PEPTIDE DEFORMYLASE JRNL REF J.MOL.BIOL. V. 330 309 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12823970 JRNL DOI 10.1016/S0022-2836(03)00596-5 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 58823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2968 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8856 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 480 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.95000 REMARK 3 B22 (A**2) : 1.41000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 44.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, 0.1 M CITRIC ACID PH 5.0, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.11200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.05800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.35150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.05800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.11200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.35150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 99 CA SER A 99 CB 0.113 REMARK 500 SER A 99 CB SER A 99 OG 0.112 REMARK 500 SER B 99 CB SER B 99 OG 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 99 -172.44 -64.25 REMARK 500 ASP B 179 -10.18 73.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 603 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -10 N REMARK 620 2 OCS A 111 SG 129.8 REMARK 620 3 OCS A 111 OD3 146.4 31.7 REMARK 620 4 HIS A 154 NE2 104.1 113.7 109.5 REMARK 620 5 HIS A 158 NE2 89.9 108.2 80.4 107.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 603 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS B 111 SG REMARK 620 2 OCS B 111 OD1 31.4 REMARK 620 3 HIS B 154 NE2 110.2 103.7 REMARK 620 4 HIS B 158 NE2 107.1 82.5 113.0 REMARK 620 5 HOH B 616 O 131.4 152.9 103.1 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LM6 RELATED DB: PDB REMARK 900 1LM6 IS THE PDF STRUCTURE FROM STREPTOCOCCUS PNEUMONIAE REMARK 900 RELATED ID: 1LME RELATED DB: PDB REMARK 900 1LME IS THE PDF STRUCTURE FROM THERMOTOGA MARITIMA DBREF 1LM4 A 1 183 UNP P68826 DEF_STAAU 1 183 DBREF 1LM4 B 1 183 UNP P68826 DEF_STAAU 1 183 SEQADV 1LM4 GLY A -10 UNP P68826 SEE REMARK 999 SEQADV 1LM4 SER A -9 UNP P68826 SEE REMARK 999 SEQADV 1LM4 ASP A -8 UNP P68826 SEE REMARK 999 SEQADV 1LM4 LYS A -7 UNP P68826 SEE REMARK 999 SEQADV 1LM4 ILE A -6 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A -5 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A -4 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A -3 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A -2 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A -1 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS A 0 UNP P68826 SEE REMARK 999 SEQADV 1LM4 OCS A 111 UNP P68826 CYS 111 MODIFIED RESIDUE SEQADV 1LM4 GLY B -10 UNP P68826 SEE REMARK 999 SEQADV 1LM4 SER B -9 UNP P68826 SEE REMARK 999 SEQADV 1LM4 ASP B -8 UNP P68826 SEE REMARK 999 SEQADV 1LM4 LYS B -7 UNP P68826 SEE REMARK 999 SEQADV 1LM4 ILE B -6 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B -5 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B -4 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B -3 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B -2 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B -1 UNP P68826 SEE REMARK 999 SEQADV 1LM4 HIS B 0 UNP P68826 SEE REMARK 999 SEQADV 1LM4 OCS B 111 UNP P68826 CYS 111 MODIFIED RESIDUE SEQRES 1 A 194 GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET LEU SEQRES 2 A 194 THR MET LYS ASP ILE ILE ARG ASP GLY HIS PRO THR LEU SEQRES 3 A 194 ARG GLN LYS ALA ALA GLU LEU GLU LEU PRO LEU THR LYS SEQRES 4 A 194 GLU GLU LYS GLU THR LEU ILE ALA MET ARG GLU PHE LEU SEQRES 5 A 194 VAL ASN SER GLN ASP GLU GLU ILE ALA LYS ARG TYR GLY SEQRES 6 A 194 LEU ARG SER GLY VAL GLY LEU ALA ALA PRO GLN ILE ASN SEQRES 7 A 194 ILE SER LYS ARG MET ILE ALA VAL LEU ILE PRO ASP ASP SEQRES 8 A 194 GLY SER GLY LYS SER TYR ASP TYR MET LEU VAL ASN PRO SEQRES 9 A 194 LYS ILE VAL SER HIS SER VAL GLN GLU ALA TYR LEU PRO SEQRES 10 A 194 THR GLY GLU GLY OCS LEU SER VAL ASP ASP ASN VAL ALA SEQRES 11 A 194 GLY LEU VAL HIS ARG HIS ASN ARG ILE THR ILE LYS ALA SEQRES 12 A 194 LYS ASP ILE GLU GLY ASN ASP ILE GLN LEU ARG LEU LYS SEQRES 13 A 194 GLY TYR PRO ALA ILE VAL PHE GLN HIS GLU ILE ASP HIS SEQRES 14 A 194 LEU ASN GLY VAL MET PHE TYR ASP HIS ILE ASP LYS ASN SEQRES 15 A 194 HIS PRO LEU GLN PRO HIS THR ASP ALA VAL GLU VAL SEQRES 1 B 194 GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET LEU SEQRES 2 B 194 THR MET LYS ASP ILE ILE ARG ASP GLY HIS PRO THR LEU SEQRES 3 B 194 ARG GLN LYS ALA ALA GLU LEU GLU LEU PRO LEU THR LYS SEQRES 4 B 194 GLU GLU LYS GLU THR LEU ILE ALA MET ARG GLU PHE LEU SEQRES 5 B 194 VAL ASN SER GLN ASP GLU GLU ILE ALA LYS ARG TYR GLY SEQRES 6 B 194 LEU ARG SER GLY VAL GLY LEU ALA ALA PRO GLN ILE ASN SEQRES 7 B 194 ILE SER LYS ARG MET ILE ALA VAL LEU ILE PRO ASP ASP SEQRES 8 B 194 GLY SER GLY LYS SER TYR ASP TYR MET LEU VAL ASN PRO SEQRES 9 B 194 LYS ILE VAL SER HIS SER VAL GLN GLU ALA TYR LEU PRO SEQRES 10 B 194 THR GLY GLU GLY OCS LEU SER VAL ASP ASP ASN VAL ALA SEQRES 11 B 194 GLY LEU VAL HIS ARG HIS ASN ARG ILE THR ILE LYS ALA SEQRES 12 B 194 LYS ASP ILE GLU GLY ASN ASP ILE GLN LEU ARG LEU LYS SEQRES 13 B 194 GLY TYR PRO ALA ILE VAL PHE GLN HIS GLU ILE ASP HIS SEQRES 14 B 194 LEU ASN GLY VAL MET PHE TYR ASP HIS ILE ASP LYS ASN SEQRES 15 B 194 HIS PRO LEU GLN PRO HIS THR ASP ALA VAL GLU VAL MODRES 1LM4 OCS A 111 CYS CYSTEINESULFONIC ACID MODRES 1LM4 OCS B 111 CYS CYSTEINESULFONIC ACID HET OCS A 111 8 HET OCS B 111 8 HET FE A 603 1 HET FE B 603 1 HET GOL B 601 6 HETNAM OCS CYSTEINESULFONIC ACID HETNAM FE FE (III) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 FE 2(FE 3+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *530(H2 O) HELIX 1 1 THR A 3 ILE A 7 5 5 HELIX 2 2 HIS A 12 GLN A 17 5 6 HELIX 3 3 THR A 27 ASP A 46 1 20 HELIX 4 4 ASP A 46 GLY A 54 1 9 HELIX 5 5 PRO A 64 ASN A 67 5 4 HELIX 6 6 GLY A 146 ASN A 160 1 15 HELIX 7 7 MET A 163 ILE A 168 5 6 HELIX 8 8 THR B 3 ILE B 7 5 5 HELIX 9 9 HIS B 12 GLN B 17 5 6 HELIX 10 10 THR B 27 GLN B 45 1 19 HELIX 11 11 ASP B 46 GLY B 54 1 9 HELIX 12 12 PRO B 64 ASN B 67 5 4 HELIX 13 13 GLY B 146 ASN B 160 1 15 HELIX 14 14 MET B 163 ILE B 168 5 6 SHEET 1 A10 GLY A 60 ALA A 62 0 SHEET 2 A10 MET A 72 ILE A 77 -1 O ALA A 74 N LEU A 61 SHEET 3 A10 TYR A 86 HIS A 98 -1 O TYR A 88 N VAL A 75 SHEET 4 A10 ARG A 127 LYS A 133 -1 O LYS A 133 N VAL A 91 SHEET 5 A10 ASP A 139 LYS A 145 -1 O ILE A 140 N ALA A 132 SHEET 6 A10 ASP B 139 LYS B 145 -1 O ASP B 139 N GLN A 141 SHEET 7 A10 ARG B 127 LYS B 133 -1 N ILE B 128 O LEU B 144 SHEET 8 A10 TYR B 86 HIS B 98 -1 N VAL B 91 O LYS B 133 SHEET 9 A10 MET B 72 ILE B 77 -1 N ILE B 77 O TYR B 86 SHEET 10 A10 GLY B 60 ALA B 62 -1 N LEU B 61 O ALA B 74 SHEET 1 B 3 ARG A 124 HIS A 125 0 SHEET 2 B 3 GLU A 102 TYR A 104 -1 N ALA A 103 O ARG A 124 SHEET 3 B 3 VAL A 181 GLU A 182 1 O VAL A 181 N TYR A 104 SHEET 1 C 3 ARG B 124 HIS B 125 0 SHEET 2 C 3 GLU B 102 TYR B 104 -1 N ALA B 103 O ARG B 124 SHEET 3 C 3 VAL B 181 GLU B 182 1 O VAL B 181 N TYR B 104 LINK C GLY A 110 N OCS A 111 1555 1555 1.32 LINK C OCS A 111 N LEU A 112 1555 1555 1.33 LINK C GLY B 110 N OCS B 111 1555 1555 1.32 LINK C OCS B 111 N LEU B 112 1555 1555 1.33 LINK N GLY A -10 FE FE A 603 1555 1555 2.06 LINK SG OCS A 111 FE FE A 603 1555 1555 2.24 LINK OD3 OCS A 111 FE FE A 603 1555 1555 2.70 LINK NE2 HIS A 154 FE FE A 603 1555 1555 2.20 LINK NE2 HIS A 158 FE FE A 603 1555 1555 2.17 LINK SG OCS B 111 FE FE B 603 1555 1555 2.34 LINK OD1 OCS B 111 FE FE B 603 1555 1555 2.79 LINK NE2 HIS B 154 FE FE B 603 1555 1555 2.18 LINK NE2 HIS B 158 FE FE B 603 1555 1555 2.09 LINK FE FE B 603 O HOH B 616 1555 1555 2.07 CISPEP 1 LEU A 24 PRO A 25 0 0.12 CISPEP 2 LEU B 24 PRO B 25 0 0.41 SITE 1 AC1 4 GLY A -10 OCS A 111 HIS A 154 HIS A 158 SITE 1 AC2 5 GLN B 65 OCS B 111 HIS B 154 HIS B 158 SITE 2 AC2 5 HOH B 616 SITE 1 AC3 7 GLU B 109 GLY B 110 TYR B 147 HIS B 154 SITE 2 AC3 7 HOH B 687 HOH B 784 HOH B 866 CRYST1 38.224 76.703 112.116 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008919 0.00000