data_1LMT # _entry.id 1LMT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LMT WWPDB D_1000174766 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LMT _pdbx_database_status.recvd_initial_deposition_date 1995-01-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsushima, M.' 1 'Song, H.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme.' J.Biol.Chem. 270 5687 5690 1995 JBCHA3 US 0021-9258 0071 ? 7890692 10.1074/jbc.270.11.5687 1 'Structural and Functional Analyses of the Arg-Gly-Asp Sequence Introduced Into Human Lysozyme' J.Biol.Chem. 268 10588 ? 1993 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, T.' 1 ? primary 'Song, H.' 2 ? primary 'Inaka, K.' 3 ? primary 'Shimada, Y.' 4 ? primary 'Kikuchi, M.' 5 ? primary 'Matsushima, M.' 6 ? 1 'Yamada, T.' 7 ? 1 'Matsushima, M.' 8 ? 1 'Inaka, K.' 9 ? 1 'Ohkubo, T.' 10 ? 1 'Uyeda, A.' 11 ? 1 'Maeda, T.' 12 ? 1 'Titani, K.' 13 ? 1 'Sekiguchi, K.' 14 ? 1 'Kikuchi, M.' 15 ? # _cell.entry_id 1LMT _cell.length_a 56.490 _cell.length_b 61.460 _cell.length_c 33.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LMT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HUMAN LYSOZYME' 15343.392 1 3.2.1.17 ? ? ? 2 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 627.594 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 115 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name triacetyl-beta-chitotriose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVCRGDSC NACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVCRGDSC NACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLU n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ARG n 1 11 THR n 1 12 LEU n 1 13 LYS n 1 14 ARG n 1 15 LEU n 1 16 GLY n 1 17 MET n 1 18 ASP n 1 19 GLY n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 ILE n 1 24 SER n 1 25 LEU n 1 26 ALA n 1 27 ASN n 1 28 TRP n 1 29 MET n 1 30 CYS n 1 31 LEU n 1 32 ALA n 1 33 LYS n 1 34 TRP n 1 35 GLU n 1 36 SER n 1 37 GLY n 1 38 TYR n 1 39 ASN n 1 40 THR n 1 41 ARG n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 TYR n 1 46 ASN n 1 47 ALA n 1 48 GLY n 1 49 ASP n 1 50 ARG n 1 51 SER n 1 52 THR n 1 53 ASP n 1 54 TYR n 1 55 GLY n 1 56 ILE n 1 57 PHE n 1 58 GLN n 1 59 ILE n 1 60 ASN n 1 61 SER n 1 62 ARG n 1 63 TYR n 1 64 TRP n 1 65 CYS n 1 66 ASN n 1 67 ASP n 1 68 GLY n 1 69 LYS n 1 70 THR n 1 71 PRO n 1 72 GLY n 1 73 ALA n 1 74 VAL n 1 75 CYS n 1 76 ARG n 1 77 GLY n 1 78 ASP n 1 79 SER n 1 80 CYS n 1 81 ASN n 1 82 ALA n 1 83 CYS n 1 84 HIS n 1 85 LEU n 1 86 SER n 1 87 CYS n 1 88 SER n 1 89 ALA n 1 90 LEU n 1 91 LEU n 1 92 GLN n 1 93 ASP n 1 94 ASN n 1 95 ILE n 1 96 ALA n 1 97 ASP n 1 98 ALA n 1 99 VAL n 1 100 ALA n 1 101 CYS n 1 102 ALA n 1 103 LYS n 1 104 ARG n 1 105 VAL n 1 106 VAL n 1 107 ARG n 1 108 ASP n 1 109 PRO n 1 110 GLN n 1 111 GLY n 1 112 ILE n 1 113 ARG n 1 114 ALA n 1 115 TRP n 1 116 VAL n 1 117 ALA n 1 118 TRP n 1 119 ARG n 1 120 ASN n 1 121 ARG n 1 122 CYS n 1 123 GLN n 1 124 ASN n 1 125 ARG n 1 126 ASP n 1 127 VAL n 1 128 ARG n 1 129 GLN n 1 130 TYR n 1 131 VAL n 1 132 GLN n 1 133 GLY n 1 134 CYS n 1 135 GLY n 1 136 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYC_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00695 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSR YWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LMT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00695 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1LMT CYS A 75 A UNP P00695 ? ? insertion 74 1 1 1LMT ARG A 76 B UNP P00695 ? ? insertion 74 2 1 1LMT GLY A 77 C UNP P00695 ? ? insertion 74 3 1 1LMT ASP A 78 D UNP P00695 ? ? insertion 74 4 1 1LMT SER A 79 E UNP P00695 ? ? insertion 74 5 1 1LMT CYS A 80 F UNP P00695 ? ? insertion 74 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LMT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 34.93 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1LMT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 6.0 _reflns.d_resolution_high 1.60 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1LMT _refine.ls_number_reflns_obs 12583 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1070 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1230 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1LMT _struct.title 'STRUCTURE OF A CONFORMATIONALLY CONSTRAINED ARG-GLY-ASP SEQUENCE INSERTED INTO HUMAN LYSOZYME' _struct.pdbx_descriptor ;LYSOZYME (E.C.3.2.1.17) (LZ_CRGD4) MUTANT WITH CYS-ARG-GLY-ASP-SER-CYS INSERTED BETWEEN VAL 74 AND ASN 75 (INS(74-CRFDSC-75) COMPLEXED WITH TRI-ACETYL-CHITOTRIOSE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LMT _struct_keywords.pdbx_keywords 'HYDROLASE (O-GLYCOSYL)' _struct_keywords.text 'HYDROLASE (O-GLYCOSYL)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A ARG A 5 ? ARG A 14 ? ARG A 5 ARG A 14 1 ? 10 HELX_P HELX_P2 B LEU A 25 ? GLU A 35 ? LEU A 25 GLU A 35 1 ? 11 HELX_P HELX_P3 E SER A 86 ? LEU A 91 ? SER A 80 LEU A 85 5 ? 6 HELX_P HELX_P4 C ALA A 96 ? VAL A 105 ? ALA A 90 VAL A 99 1 ? 10 HELX_P HELX_P5 D VAL A 116 ? CYS A 122 ? VAL A 110 CYS A 116 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 134 SG ? ? A CYS 6 A CYS 128 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 30 A CYS 116 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf3 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 87 SG ? ? A CYS 65 A CYS 81 1_555 ? ? ? ? ? ? ? 2.076 ? ? disulf4 disulf ? ? A CYS 75 SG ? A ? 1_555 A CYS 80 SG ? F A CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf5 disulf ? ? A CYS 83 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 77 A CYS 95 1_555 ? ? ? ? ? ? ? 2.010 ? ? covale1 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.383 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 1 ? PHE A 3 ? LYS A 1 PHE A 3 A 2 TYR A 38 ? THR A 40 ? TYR A 38 THR A 40 B 1 ALA A 42 ? ASN A 46 ? ALA A 42 ASN A 46 B 2 SER A 51 ? GLY A 55 ? SER A 51 GLY A 55 B 3 ILE A 59 ? SER A 61 ? ILE A 59 SER A 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 1 ? O LYS A 1 N THR A 40 ? N THR A 40 B 1 2 O ALA A 42 ? O ALA A 42 N GLY A 55 ? N GLY A 55 B 2 3 O THR A 52 ? O THR A 52 N SER A 61 ? N SER A 61 # _struct_site.id RGD _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 RGD 3 ARG A 76 B ARG A 74 . ? 1_555 ? 2 RGD 3 GLY A 77 C GLY A 74 . ? 1_555 ? 3 RGD 3 ASP A 78 D ASP A 74 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LMT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LMT _atom_sites.fract_transf_matrix[1][1] 0.017702 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029922 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 CYS 65 65 65 CYS CYS A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 CYS 75 74 74 CYS CYS A A n A 1 76 ARG 76 74 74 ARG ARG A B n A 1 77 GLY 77 74 74 GLY GLY A C n A 1 78 ASP 78 74 74 ASP ASP A D n A 1 79 SER 79 74 74 SER SER A E n A 1 80 CYS 80 74 74 CYS CYS A F n A 1 81 ASN 81 75 75 ASN ASN A . n A 1 82 ALA 82 76 76 ALA ALA A . n A 1 83 CYS 83 77 77 CYS CYS A . n A 1 84 HIS 84 78 78 HIS HIS A . n A 1 85 LEU 85 79 79 LEU LEU A . n A 1 86 SER 86 80 80 SER SER A . n A 1 87 CYS 87 81 81 CYS CYS A . n A 1 88 SER 88 82 82 SER SER A . n A 1 89 ALA 89 83 83 ALA ALA A . n A 1 90 LEU 90 84 84 LEU LEU A . n A 1 91 LEU 91 85 85 LEU LEU A . n A 1 92 GLN 92 86 86 GLN GLN A . n A 1 93 ASP 93 87 87 ASP ASP A . n A 1 94 ASN 94 88 88 ASN ASN A . n A 1 95 ILE 95 89 89 ILE ILE A . n A 1 96 ALA 96 90 90 ALA ALA A . n A 1 97 ASP 97 91 91 ASP ASP A . n A 1 98 ALA 98 92 92 ALA ALA A . n A 1 99 VAL 99 93 93 VAL VAL A . n A 1 100 ALA 100 94 94 ALA ALA A . n A 1 101 CYS 101 95 95 CYS CYS A . n A 1 102 ALA 102 96 96 ALA ALA A . n A 1 103 LYS 103 97 97 LYS LYS A . n A 1 104 ARG 104 98 98 ARG ARG A . n A 1 105 VAL 105 99 99 VAL VAL A . n A 1 106 VAL 106 100 100 VAL VAL A . n A 1 107 ARG 107 101 101 ARG ARG A . n A 1 108 ASP 108 102 102 ASP ASP A . n A 1 109 PRO 109 103 103 PRO PRO A . n A 1 110 GLN 110 104 104 GLN GLN A . n A 1 111 GLY 111 105 105 GLY GLY A . n A 1 112 ILE 112 106 106 ILE ILE A . n A 1 113 ARG 113 107 107 ARG ARG A . n A 1 114 ALA 114 108 108 ALA ALA A . n A 1 115 TRP 115 109 109 TRP TRP A . n A 1 116 VAL 116 110 110 VAL VAL A . n A 1 117 ALA 117 111 111 ALA ALA A . n A 1 118 TRP 118 112 112 TRP TRP A . n A 1 119 ARG 119 113 113 ARG ARG A . n A 1 120 ASN 120 114 114 ASN ASN A . n A 1 121 ARG 121 115 115 ARG ARG A . n A 1 122 CYS 122 116 116 CYS CYS A . n A 1 123 GLN 123 117 117 GLN GLN A . n A 1 124 ASN 124 118 118 ASN ASN A . n A 1 125 ARG 125 119 119 ARG ARG A . n A 1 126 ASP 126 120 120 ASP ASP A . n A 1 127 VAL 127 121 121 VAL VAL A . n A 1 128 ARG 128 122 122 ARG ARG A . n A 1 129 GLN 129 123 123 GLN GLN A . n A 1 130 TYR 130 124 124 TYR TYR A . n A 1 131 VAL 131 125 125 VAL VAL A . n A 1 132 GLN 132 126 126 GLN GLN A . n A 1 133 GLY 133 127 127 GLY GLY A . n A 1 134 CYS 134 128 128 CYS CYS A . n A 1 135 GLY 135 129 129 GLY GLY A . n A 1 136 VAL 136 130 130 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 145 145 CL CL A . D 3 CL 1 146 146 CL CL A . E 4 HOH 1 150 150 HOH HOH A . E 4 HOH 2 151 151 HOH HOH A . E 4 HOH 3 152 152 HOH HOH A . E 4 HOH 4 153 153 HOH HOH A . E 4 HOH 5 154 154 HOH HOH A . E 4 HOH 6 156 156 HOH HOH A . E 4 HOH 7 157 157 HOH HOH A . E 4 HOH 8 158 158 HOH HOH A . E 4 HOH 9 159 159 HOH HOH A . E 4 HOH 10 166 166 HOH HOH A . E 4 HOH 11 167 167 HOH HOH A . E 4 HOH 12 168 168 HOH HOH A . E 4 HOH 13 170 170 HOH HOH A . E 4 HOH 14 171 171 HOH HOH A . E 4 HOH 15 172 172 HOH HOH A . E 4 HOH 16 173 173 HOH HOH A . E 4 HOH 17 174 174 HOH HOH A . E 4 HOH 18 175 175 HOH HOH A . E 4 HOH 19 176 176 HOH HOH A . E 4 HOH 20 177 177 HOH HOH A . E 4 HOH 21 178 178 HOH HOH A . E 4 HOH 22 179 179 HOH HOH A . E 4 HOH 23 180 180 HOH HOH A . E 4 HOH 24 181 181 HOH HOH A . E 4 HOH 25 183 183 HOH HOH A . E 4 HOH 26 184 184 HOH HOH A . E 4 HOH 27 185 185 HOH HOH A . E 4 HOH 28 187 187 HOH HOH A . E 4 HOH 29 188 188 HOH HOH A . E 4 HOH 30 189 189 HOH HOH A . E 4 HOH 31 190 190 HOH HOH A . E 4 HOH 32 191 191 HOH HOH A . E 4 HOH 33 192 192 HOH HOH A . E 4 HOH 34 193 193 HOH HOH A . E 4 HOH 35 194 194 HOH HOH A . E 4 HOH 36 195 195 HOH HOH A . E 4 HOH 37 196 196 HOH HOH A . E 4 HOH 38 197 197 HOH HOH A . E 4 HOH 39 198 198 HOH HOH A . E 4 HOH 40 199 199 HOH HOH A . E 4 HOH 41 200 200 HOH HOH A . E 4 HOH 42 201 201 HOH HOH A . E 4 HOH 43 204 204 HOH HOH A . E 4 HOH 44 205 205 HOH HOH A . E 4 HOH 45 206 206 HOH HOH A . E 4 HOH 46 208 208 HOH HOH A . E 4 HOH 47 210 210 HOH HOH A . E 4 HOH 48 212 212 HOH HOH A . E 4 HOH 49 213 213 HOH HOH A . E 4 HOH 50 214 214 HOH HOH A . E 4 HOH 51 215 215 HOH HOH A . E 4 HOH 52 216 216 HOH HOH A . E 4 HOH 53 218 218 HOH HOH A . E 4 HOH 54 219 219 HOH HOH A . E 4 HOH 55 220 220 HOH HOH A . E 4 HOH 56 221 221 HOH HOH A . E 4 HOH 57 222 222 HOH HOH A . E 4 HOH 58 224 224 HOH HOH A . E 4 HOH 59 226 226 HOH HOH A . E 4 HOH 60 227 227 HOH HOH A . E 4 HOH 61 228 228 HOH HOH A . E 4 HOH 62 229 229 HOH HOH A . E 4 HOH 63 231 231 HOH HOH A . E 4 HOH 64 232 232 HOH HOH A . E 4 HOH 65 233 233 HOH HOH A . E 4 HOH 66 240 240 HOH HOH A . E 4 HOH 67 242 242 HOH HOH A . E 4 HOH 68 243 243 HOH HOH A . E 4 HOH 69 245 245 HOH HOH A . E 4 HOH 70 246 246 HOH HOH A . E 4 HOH 71 247 247 HOH HOH A . E 4 HOH 72 248 248 HOH HOH A . E 4 HOH 73 249 249 HOH HOH A . E 4 HOH 74 250 250 HOH HOH A . E 4 HOH 75 251 251 HOH HOH A . E 4 HOH 76 252 252 HOH HOH A . E 4 HOH 77 253 253 HOH HOH A . E 4 HOH 78 254 254 HOH HOH A . E 4 HOH 79 255 255 HOH HOH A . E 4 HOH 80 256 256 HOH HOH A . E 4 HOH 81 257 257 HOH HOH A . E 4 HOH 82 260 260 HOH HOH A . E 4 HOH 83 261 261 HOH HOH A . E 4 HOH 84 262 262 HOH HOH A . E 4 HOH 85 263 263 HOH HOH A . E 4 HOH 86 264 264 HOH HOH A . E 4 HOH 87 265 265 HOH HOH A . E 4 HOH 88 266 266 HOH HOH A . E 4 HOH 89 267 267 HOH HOH A . E 4 HOH 90 268 268 HOH HOH A . E 4 HOH 91 270 270 HOH HOH A . E 4 HOH 92 271 271 HOH HOH A . E 4 HOH 93 272 272 HOH HOH A . E 4 HOH 94 273 273 HOH HOH A . E 4 HOH 95 274 274 HOH HOH A . E 4 HOH 96 275 275 HOH HOH A . E 4 HOH 97 276 276 HOH HOH A . E 4 HOH 98 280 280 HOH HOH A . E 4 HOH 99 281 281 HOH HOH A . E 4 HOH 100 282 282 HOH HOH A . E 4 HOH 101 283 283 HOH HOH A . E 4 HOH 102 284 284 HOH HOH A . E 4 HOH 103 285 285 HOH HOH A . E 4 HOH 104 286 286 HOH HOH A . E 4 HOH 105 287 287 HOH HOH A . E 4 HOH 106 288 288 HOH HOH A . E 4 HOH 107 289 289 HOH HOH A . E 4 HOH 108 290 290 HOH HOH A . E 4 HOH 109 291 291 HOH HOH A . E 4 HOH 110 292 292 HOH HOH A . E 4 HOH 111 293 293 HOH HOH A . E 4 HOH 112 294 294 HOH HOH A . E 4 HOH 113 295 295 HOH HOH A . E 4 HOH 114 296 296 HOH HOH A . E 4 HOH 115 297 297 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900017 _pdbx_molecule_features.name triacetyl-beta-chitotriose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900017 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-03-31 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2019-07-17 6 'Structure model' 1 5 2019-08-14 7 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Refinement description' 11 7 'Structure model' 'Atomic model' 12 7 'Structure model' 'Data collection' 13 7 'Structure model' 'Database references' 14 7 'Structure model' 'Derived calculations' 15 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' software 5 5 'Structure model' struct_conn 6 6 'Structure model' software 7 7 'Structure model' atom_site 8 7 'Structure model' chem_comp 9 7 'Structure model' entity 10 7 'Structure model' entity_name_com 11 7 'Structure model' pdbx_branch_scheme 12 7 'Structure model' pdbx_chem_comp_identifier 13 7 'Structure model' pdbx_entity_branch 14 7 'Structure model' pdbx_entity_branch_descriptor 15 7 'Structure model' pdbx_entity_branch_link 16 7 'Structure model' pdbx_entity_branch_list 17 7 'Structure model' pdbx_entity_nonpoly 18 7 'Structure model' pdbx_molecule_features 19 7 'Structure model' pdbx_nonpoly_scheme 20 7 'Structure model' pdbx_struct_assembly_gen 21 7 'Structure model' struct_asym 22 7 'Structure model' struct_conn 23 7 'Structure model' struct_ref_seq_dif 24 7 'Structure model' struct_site 25 7 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_software.classification' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_software.classification' 5 7 'Structure model' '_atom_site.B_iso_or_equiv' 6 7 'Structure model' '_atom_site.Cartn_x' 7 7 'Structure model' '_atom_site.Cartn_y' 8 7 'Structure model' '_atom_site.Cartn_z' 9 7 'Structure model' '_atom_site.auth_asym_id' 10 7 'Structure model' '_atom_site.auth_atom_id' 11 7 'Structure model' '_atom_site.auth_seq_id' 12 7 'Structure model' '_atom_site.label_asym_id' 13 7 'Structure model' '_atom_site.label_atom_id' 14 7 'Structure model' '_chem_comp.name' 15 7 'Structure model' '_chem_comp.type' 16 7 'Structure model' '_entity.formula_weight' 17 7 'Structure model' '_entity.pdbx_description' 18 7 'Structure model' '_entity.pdbx_number_of_molecules' 19 7 'Structure model' '_entity.type' 20 7 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 7 'Structure model' '_struct_conn.pdbx_dist_value' 22 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 7 'Structure model' '_struct_conn.pdbx_value_order' 24 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 7 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROLSQ refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _pdbx_entry_details.entry_id 1LMT _pdbx_entry_details.compound_details ;THE LYSOZYME MOLECULE BINDS THE SACCHARIDE MOLECULE, (GLCNAC)3, IN THE BINDING SUBSITES, A, B, AND C. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 14 ? ? CZ A ARG 14 ? ? NH2 A ARG 14 ? ? 117.26 120.30 -3.04 0.50 N 2 1 CB A ASP 18 ? ? CG A ASP 18 ? ? OD1 A ASP 18 ? ? 124.32 118.30 6.02 0.90 N 3 1 CB A ASP 18 ? ? CG A ASP 18 ? ? OD2 A ASP 18 ? ? 111.97 118.30 -6.33 0.90 N 4 1 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH2 A ARG 21 ? ? 124.89 120.30 4.59 0.50 N 5 1 CD A ARG 41 ? ? NE A ARG 41 ? ? CZ A ARG 41 ? ? 133.25 123.60 9.65 1.40 N 6 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH1 A ARG 41 ? ? 124.91 120.30 4.61 0.50 N 7 1 CD A ARG 50 ? ? NE A ARG 50 ? ? CZ A ARG 50 ? ? 133.41 123.60 9.81 1.40 N 8 1 O A THR 52 ? ? C A THR 52 ? ? N A ASP 53 ? ? 132.70 122.70 10.00 1.60 Y 9 1 CB A ASP 53 ? ? CG A ASP 53 ? ? OD2 A ASP 53 ? ? 111.25 118.30 -7.05 0.90 N 10 1 O A ILE 56 ? ? C A ILE 56 ? ? N A PHE 57 ? ? 132.31 122.70 9.61 1.60 Y 11 1 NE A ARG 101 ? ? CZ A ARG 101 ? ? NH1 A ARG 101 ? ? 125.96 120.30 5.66 0.50 N 12 1 NE A ARG 101 ? ? CZ A ARG 101 ? ? NH2 A ARG 101 ? ? 117.02 120.30 -3.28 0.50 N 13 1 CD A ARG 107 ? ? NE A ARG 107 ? ? CZ A ARG 107 ? ? 135.00 123.60 11.40 1.40 N 14 1 NE A ARG 115 ? ? CZ A ARG 115 ? ? NH2 A ARG 115 ? ? 115.36 120.30 -4.94 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 69 ? ? -108.42 78.67 2 1 THR A 70 ? ? -160.44 111.89 3 1 PRO A 71 ? ? -75.16 -91.52 4 1 ASN A 75 ? ? -152.28 69.67 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 143 n B 2 NAG 2 B NAG 2 ? NAG 142 n B 2 NAG 3 B NAG 3 ? NAG 141 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 NAG C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 NAG 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH #