HEADER TRANSCRIPTION 08-MAY-02 1LPV TITLE DROSOPHILA MELANOGASTER DOUBLESEX (DSX), NMR, 18 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLESEX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE NATURALLY OCCURS IN DROSOPHILA SOURCE 4 MELANOGASTER (FRUIT FLY). KEYWDS TRANSCRIPTION, DROSOPHILA MELANOGASTER, DNA BINDING, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR L.ZHU,J.WILKEN,N.PHILLIPS,U.NARENDRA,G.CHAN,S.STRATTON,S.KENT, AUTHOR 2 M.A.WEISS REVDAT 5 22-MAY-24 1LPV 1 REMARK REVDAT 4 23-FEB-22 1LPV 1 REMARK LINK REVDAT 3 24-FEB-09 1LPV 1 VERSN REVDAT 2 01-APR-03 1LPV 1 JRNL REVDAT 1 02-OCT-02 1LPV 0 JRNL AUTH L.ZHU,J.WILKEN,N.B.PHILLIPS,U.NARENDRA,G.CHAN,S.M.STRATTON, JRNL AUTH 2 S.B.KENT,M.A.WEISS JRNL TITL SEXUAL DIMORPHISM IN DIVERSE METAZOANS IS REGULATED BY A JRNL TITL 2 NOVEL CLASS OF INTERTWINED ZINC FINGERS. JRNL REF GENES DEV. V. 14 1750 2000 JRNL REFN ISSN 0890-9369 JRNL PMID 10898790 JRNL DOI 10.1101/GAD.189500 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.E.ERDMAN,K.C.BURTIS REMARK 1 TITL THE DROSOPHILA DOUBLESEX PROTEINS SHARE A NOVEL ZIN FINGER REMARK 1 TITL 2 RELATED DNA-BINDING DOMAIN REMARK 1 REF EMBO J. V. 12 527 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.S.RAYMOND,C.E.SHAMU,M.M.SHEN,K.J.SEIFERT,B.HIRSCH, REMARK 1 AUTH 2 J.HODGKIN,D.ZARKOWER REMARK 1 TITL EVIDENCE FOR EVOLUTIONARY CONSERVATION OF SEX-DETERMINING REMARK 1 TITL 2 GENES REMARK 1 REF NATURE V. 391 691 1998 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/35618 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MOLECULAR MODELS WERE OBTAINED BY DGII IMPLEMENTED IN INSIGHT II REMARK 3 (BIOSYM INC., SAN DIEGO, CA), FOLLOWED BY REFINEMENT WITH REMARK 3 SIMULATED ANNEALING IN X-PLOR (T.F.HAVEL, A.T.BRUNGER). RESIDUE 1 REMARK 3 IN RESTRAINTS CORRESPONDS TO RESIDUE 35 IN DSX. REMARK 3 TWO ZINC BINDING SITES ARE: C44,C47,H59,C63 AND H50,C68 C70, C73 REMARK 3 EACH IN A TETRAHEDRAL PATTERN. REMARK 3 (I.E., 10,13,25,29 AND 16,34,36,39 IN THE COORDINATES). RESIDUE 35- REMARK 3 40 AND 82-105 IN DEX ARE DISORDERED. STRUCTURES ARE GIVING FOR REMARK 3 RESIDUES 35 TO 86, CORRESPONDING TO 1 TO 52 NUMBERED IN THE REMARK 3 COORDINATES. REMARK 3 NO MINOR CONFORMERS WERE DETECTED. REMARK 4 REMARK 4 1LPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016166. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NMR EXPERIMENTS WERE CONDUCTED ON VARIAN INOVA 600 MHZ REMARK 210 SPECTROMETERS. SOFTWARE VNMR5.1 AND FELIX WERE USED TO PROCESS REMARK 210 NMR DATA. STRUCTURE DETERMINATION WAS PERFORMED ON A SILICON REMARK 210 GRAPHICS WORK STATION. IN 50 MM DEUTERATED TRIS, 10 MM REMARK 210 DEUTERATED DTT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-18 REMARK 470 RES CSSEQI ATOMS REMARK 470 SER A 1 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 26 H CYS A 29 1.47 REMARK 500 O CYS A 29 H ARG A 32 1.48 REMARK 500 O THR A 35 HH11 ARG A 40 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 9 162.78 51.14 REMARK 500 1 THR A 21 -2.98 80.55 REMARK 500 1 LEU A 22 13.78 54.37 REMARK 500 1 HIS A 25 -101.49 -127.49 REMARK 500 1 LYS A 26 -91.90 41.11 REMARK 500 1 CYS A 34 169.66 -46.40 REMARK 500 1 CYS A 36 171.15 -46.22 REMARK 500 2 LEU A 22 25.77 47.58 REMARK 500 2 HIS A 25 -99.05 -109.19 REMARK 500 2 LYS A 26 -92.92 44.46 REMARK 500 2 CYS A 34 169.55 -46.91 REMARK 500 2 CYS A 36 168.57 -46.32 REMARK 500 2 GLN A 46 56.85 -113.52 REMARK 500 3 SER A 3 -64.12 -160.45 REMARK 500 3 LEU A 22 22.79 48.69 REMARK 500 3 HIS A 25 -101.01 -125.65 REMARK 500 3 LYS A 26 -93.60 43.15 REMARK 500 3 CYS A 34 168.93 -47.16 REMARK 500 3 CYS A 36 173.22 -48.92 REMARK 500 3 THR A 42 -70.89 -76.59 REMARK 500 3 VAL A 48 56.22 -93.40 REMARK 500 3 ALA A 50 -73.90 -151.49 REMARK 500 4 LEU A 22 18.68 50.40 REMARK 500 4 HIS A 25 -101.76 -132.76 REMARK 500 4 LYS A 26 -89.59 43.85 REMARK 500 4 CYS A 34 169.11 -44.79 REMARK 500 4 THR A 35 12.24 -145.09 REMARK 500 4 CYS A 36 -174.57 -54.69 REMARK 500 5 ILE A 2 160.27 58.81 REMARK 500 5 LEU A 22 20.98 46.51 REMARK 500 5 HIS A 25 -103.27 -119.51 REMARK 500 5 LYS A 26 -82.09 48.54 REMARK 500 5 PHE A 31 11.93 -142.48 REMARK 500 5 CYS A 34 170.04 -45.63 REMARK 500 5 CYS A 36 -177.46 -52.09 REMARK 500 5 ARG A 47 167.96 -48.43 REMARK 500 6 LEU A 22 23.80 47.26 REMARK 500 6 HIS A 25 -100.52 -124.66 REMARK 500 6 LYS A 26 -93.90 45.06 REMARK 500 6 CYS A 36 176.18 -49.33 REMARK 500 6 ARG A 45 -28.55 -37.71 REMARK 500 6 ARG A 47 84.26 -59.27 REMARK 500 7 PRO A 4 -159.68 -73.88 REMARK 500 7 THR A 21 5.88 82.52 REMARK 500 7 LEU A 22 26.03 42.04 REMARK 500 7 HIS A 25 -100.02 -117.45 REMARK 500 7 LYS A 26 -93.58 43.37 REMARK 500 7 CYS A 36 171.88 -48.08 REMARK 500 8 SER A 3 61.91 -158.51 REMARK 500 8 ARG A 5 40.15 -87.16 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 5 0.24 SIDE CHAIN REMARK 500 1 ARG A 12 0.32 SIDE CHAIN REMARK 500 1 ARG A 14 0.24 SIDE CHAIN REMARK 500 1 ARG A 27 0.31 SIDE CHAIN REMARK 500 1 ARG A 32 0.23 SIDE CHAIN REMARK 500 1 ARG A 40 0.23 SIDE CHAIN REMARK 500 1 ARG A 45 0.20 SIDE CHAIN REMARK 500 1 ARG A 47 0.18 SIDE CHAIN REMARK 500 2 ARG A 5 0.27 SIDE CHAIN REMARK 500 2 ARG A 27 0.21 SIDE CHAIN REMARK 500 2 ARG A 32 0.19 SIDE CHAIN REMARK 500 2 ARG A 40 0.30 SIDE CHAIN REMARK 500 2 ARG A 45 0.28 SIDE CHAIN REMARK 500 2 ARG A 47 0.30 SIDE CHAIN REMARK 500 3 ARG A 5 0.31 SIDE CHAIN REMARK 500 3 ARG A 12 0.23 SIDE CHAIN REMARK 500 3 ARG A 14 0.32 SIDE CHAIN REMARK 500 3 ARG A 27 0.21 SIDE CHAIN REMARK 500 3 ARG A 32 0.15 SIDE CHAIN REMARK 500 3 ARG A 40 0.30 SIDE CHAIN REMARK 500 3 ARG A 47 0.27 SIDE CHAIN REMARK 500 4 ARG A 5 0.32 SIDE CHAIN REMARK 500 4 ARG A 12 0.23 SIDE CHAIN REMARK 500 4 ARG A 14 0.32 SIDE CHAIN REMARK 500 4 ARG A 27 0.32 SIDE CHAIN REMARK 500 4 ARG A 40 0.23 SIDE CHAIN REMARK 500 4 ARG A 45 0.30 SIDE CHAIN REMARK 500 4 ARG A 47 0.20 SIDE CHAIN REMARK 500 5 ARG A 5 0.32 SIDE CHAIN REMARK 500 5 ARG A 12 0.30 SIDE CHAIN REMARK 500 5 ARG A 14 0.31 SIDE CHAIN REMARK 500 5 ARG A 27 0.28 SIDE CHAIN REMARK 500 5 ARG A 32 0.23 SIDE CHAIN REMARK 500 5 ARG A 40 0.28 SIDE CHAIN REMARK 500 5 ARG A 45 0.32 SIDE CHAIN REMARK 500 5 ARG A 47 0.32 SIDE CHAIN REMARK 500 6 ARG A 5 0.31 SIDE CHAIN REMARK 500 6 ARG A 12 0.29 SIDE CHAIN REMARK 500 6 ARG A 14 0.14 SIDE CHAIN REMARK 500 6 ARG A 27 0.23 SIDE CHAIN REMARK 500 6 ARG A 32 0.15 SIDE CHAIN REMARK 500 6 ARG A 40 0.23 SIDE CHAIN REMARK 500 6 ARG A 47 0.23 SIDE CHAIN REMARK 500 7 ARG A 5 0.21 SIDE CHAIN REMARK 500 7 ARG A 12 0.20 SIDE CHAIN REMARK 500 7 ARG A 14 0.16 SIDE CHAIN REMARK 500 7 ARG A 27 0.28 SIDE CHAIN REMARK 500 7 ARG A 32 0.32 SIDE CHAIN REMARK 500 7 ARG A 40 0.30 SIDE CHAIN REMARK 500 7 ARG A 45 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 137 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 103.7 REMARK 620 3 HIS A 25 NE2 107.6 113.4 REMARK 620 4 CYS A 29 SG 105.9 122.6 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 53 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 CYS A 34 SG 100.9 REMARK 620 3 CYS A 36 SG 100.5 112.9 REMARK 620 4 CYS A 39 SG 124.6 110.4 107.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 53 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 54 DBREF 1LPV A 1 52 UNP P23023 DSX_DROME 35 86 SEQRES 1 A 52 SER ILE SER PRO ARG THR PRO PRO ASN CYS ALA ARG CYS SEQRES 2 A 52 ARG ASN HIS GLY LEU LYS ILE THR LEU LYS GLY HIS LYS SEQRES 3 A 52 ARG TYR CYS LYS PHE ARG TYR CYS THR CYS GLU LYS CYS SEQRES 4 A 52 ARG LEU THR ALA ASP ARG GLN ARG VAL MET ALA LEU GLN HET ZN A 53 1 HET ZN A 54 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 10 ASN A 15 1 6 HELIX 2 2 HIS A 25 CYS A 29 5 5 HELIX 3 3 CYS A 36 ARG A 47 1 12 LINK SG CYS A 10 ZN ZN A 54 1555 1555 2.21 LINK SG CYS A 13 ZN ZN A 54 1555 1555 2.31 LINK NE2 HIS A 16 ZN ZN A 53 1555 1555 2.03 LINK NE2 HIS A 25 ZN ZN A 54 1555 1555 2.07 LINK SG CYS A 29 ZN ZN A 54 1555 1555 2.27 LINK SG CYS A 34 ZN ZN A 53 1555 1555 2.27 LINK SG CYS A 36 ZN ZN A 53 1555 1555 2.27 LINK SG CYS A 39 ZN ZN A 53 1555 1555 2.27 SITE 1 AC1 4 HIS A 16 CYS A 34 CYS A 36 CYS A 39 SITE 1 AC2 5 CYS A 10 CYS A 13 ILE A 20 HIS A 25 SITE 2 AC2 5 CYS A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1