data_1LSL # _entry.id 1LSL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LSL RCSB RCSB016244 WWPDB D_1000016244 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LSL _pdbx_database_status.recvd_initial_deposition_date 2002-05-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Duquette, M.' 2 'Liu, J.' 3 'Dong, Y.' 4 'Zhang, R.' 5 'Joachimiak, A.' 6 'Lawler, J.' 7 'Wang, J.-H.' 8 # _citation.id primary _citation.title ;Crystal structure of the TSP-1 type 1 repeats: a novel layered fold and its biological implication. ; _citation.journal_abbrev 'J.Cell Biol.' _citation.journal_volume 159 _citation.page_first 373 _citation.page_last 382 _citation.year 2002 _citation.journal_id_ASTM JCLBA3 _citation.country US _citation.journal_id_ISSN 0021-9525 _citation.journal_id_CSD 2019 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12391027 _citation.pdbx_database_id_DOI 10.1083/jcb.200206062 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tan, K.' 1 ? primary 'Duquette, M.' 2 ? primary 'Liu, J.H.' 3 ? primary 'Dong, Y.' 4 ? primary 'Zhang, R.' 5 ? primary 'Joachimiak, A.' 6 ? primary 'Lawler, J.' 7 ? primary 'Wang, J.H.' 8 ? # _cell.entry_id 1LSL _cell.length_a 67.63 _cell.length_b 84.41 _cell.length_c 37.17 _cell.angle_alpha 90 _cell.angle_beta 108.67 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 # _symmetry.entry_id 1LSL _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thrombospondin 1' 12176.628 1 ? ? 'TSP Type 1 Repeats 2 and 3 (residues 434-546)' ? 2 non-polymer man beta-L-fucopyranose 164.156 1 ? ? ? ? 3 non-polymer man alpha-L-fucopyranose 164.156 1 ? ? ? ? 4 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC ; _entity_poly.pdbx_seq_one_letter_code_can ;QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 GLY n 1 4 GLY n 1 5 TRP n 1 6 SER n 1 7 HIS n 1 8 TRP n 1 9 SER n 1 10 PRO n 1 11 TRP n 1 12 SER n 1 13 SER n 1 14 CYS n 1 15 SER n 1 16 VAL n 1 17 THR n 1 18 CYS n 1 19 GLY n 1 20 ASP n 1 21 GLY n 1 22 VAL n 1 23 ILE n 1 24 THR n 1 25 ARG n 1 26 ILE n 1 27 ARG n 1 28 LEU n 1 29 CYS n 1 30 ASN n 1 31 SER n 1 32 PRO n 1 33 SER n 1 34 PRO n 1 35 GLN n 1 36 MET n 1 37 ASN n 1 38 GLY n 1 39 LYS n 1 40 PRO n 1 41 CYS n 1 42 GLU n 1 43 GLY n 1 44 GLU n 1 45 ALA n 1 46 ARG n 1 47 GLU n 1 48 THR n 1 49 LYS n 1 50 ALA n 1 51 CYS n 1 52 LYS n 1 53 LYS n 1 54 ASP n 1 55 ALA n 1 56 CYS n 1 57 PRO n 1 58 ILE n 1 59 ASN n 1 60 GLY n 1 61 GLY n 1 62 TRP n 1 63 GLY n 1 64 PRO n 1 65 TRP n 1 66 SER n 1 67 PRO n 1 68 TRP n 1 69 ASP n 1 70 ILE n 1 71 CYS n 1 72 SER n 1 73 VAL n 1 74 THR n 1 75 CYS n 1 76 GLY n 1 77 GLY n 1 78 GLY n 1 79 VAL n 1 80 GLN n 1 81 LYS n 1 82 ARG n 1 83 SER n 1 84 ARG n 1 85 LEU n 1 86 CYS n 1 87 ASN n 1 88 ASN n 1 89 PRO n 1 90 THR n 1 91 PRO n 1 92 GLN n 1 93 PHE n 1 94 GLY n 1 95 GLY n 1 96 LYS n 1 97 ASP n 1 98 CYS n 1 99 VAL n 1 100 GLY n 1 101 ASP n 1 102 VAL n 1 103 THR n 1 104 GLU n 1 105 ASN n 1 106 GLN n 1 107 ILE n 1 108 CYS n 1 109 ASN n 1 110 LYS n 1 111 GLN n 1 112 ASP n 1 113 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene THBS1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fruit flies' _entity_src_gen.pdbx_host_org_scientific_name Drosophila _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7215 _entity_src_gen.host_org_genus Drosophila _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'S2 cells' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type eukaryotic _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PMT-BIP-V5-HIS A' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TSP1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC ; _struct_ref.pdbx_align_begin 434 _struct_ref.pdbx_db_accession P07996 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LSL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07996 _struct_ref_seq.db_align_beg 434 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 546 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 416 _struct_ref_seq.pdbx_auth_seq_align_end 528 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 FUL 'L-saccharide, beta linking' . beta-L-fucopyranose 6-DEOXY-BETA-L-GALACTOSE 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LSL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.2 _exptl_crystal.density_Matthews 3.56 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.5 M sodium potassium tartrate and 0.1 M sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2000-12-17 ? 2 CCD 'ADSC QUANTUM 4' 2000-12-17 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M Graphite MAD x-ray 2 1 M Graphite 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.00803 1.0 2 1.00808 1.0 3 1.0596 1.0 4 1.10000 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? '1.00803, 1.00808, 1.0596' 2 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? 1.10000 # _reflns.entry_id 1LSL _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 20 _reflns.number_all ? _reflns.number_obs 15123 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.B_iso_Wilson_estimate 26.4 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.469 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1LSL _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 15123 _refine.ls_number_reflns_obs 15123 _refine.ls_number_reflns_R_free 1533 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_all 0.235 _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.282 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 10 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 42.28 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LSL _refine_analyze.Luzzati_coordinate_error_obs 0.321 _refine_analyze.Luzzati_sigma_a_obs 0.321 _refine_analyze.Luzzati_d_res_low_obs 3 _refine_analyze.Luzzati_coordinate_error_free 0.345 _refine_analyze.Luzzati_sigma_a_free 0.345 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 844 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1018 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.631 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 27.854 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.825 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 1545 _refine_ls_shell.R_factor_R_work 0.439 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.457 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 168 _refine_ls_shell.number_reflns_obs 1545 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LSL _struct.title 'Crystal Structure of the Thrombospondin-1 Type 1 Repeats' _struct.pdbx_descriptor 'Thrombospondin 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LSL _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'TSP-1, TSR, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 429 A CYS 466 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 433 A CYS 471 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 444 A CYS 456 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf4 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 108 SG ? ? A CYS 486 A CYS 523 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 113 SG ? ? A CYS 490 A CYS 528 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf6 disulf ? ? A CYS 86 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 501 A CYS 513 1_555 ? ? ? ? ? ? ? 2.046 ? ? covale1 covale one ? A THR 17 OG1 ? ? ? 1_555 B FUL . C1 ? ? A THR 432 A FUL 1432 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale2 covale one ? A THR 74 OG1 ? ? ? 1_555 C FUC . C1 ? ? A THR 489 A FUC 1489 1_555 ? ? ? ? ? ? ? 1.408 ? O-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 31 A . ? SER 446 A PRO 32 A ? PRO 447 A 1 -0.07 2 ASN 88 A . ? ASN 503 A PRO 89 A ? PRO 504 A 1 0.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 20 ? ILE A 26 ? ASP A 435 ILE A 441 A 2 ARG A 46 ? LYS A 52 ? ARG A 461 LYS A 467 B 1 GLY A 78 ? SER A 83 ? GLY A 493 SER A 498 B 2 THR A 103 ? CYS A 108 ? THR A 518 CYS A 523 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 23 ? N ILE A 438 O LYS A 49 ? O LYS A 464 B 1 2 N ARG A 82 ? N ARG A 497 O GLU A 104 ? O GLU A 519 # _database_PDB_matrix.entry_id 1LSL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LSL _atom_sites.fract_transf_matrix[1][1] 0.014786 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004996 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011847 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028398 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'FUC A 1489 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 416 416 GLN GLN A . n A 1 2 ASP 2 417 417 ASP ASP A . n A 1 3 GLY 3 418 418 GLY GLY A . n A 1 4 GLY 4 419 419 GLY GLY A . n A 1 5 TRP 5 420 420 TRP TRP A . n A 1 6 SER 6 421 421 SER SER A . n A 1 7 HIS 7 422 422 HIS HIS A . n A 1 8 TRP 8 423 423 TRP TRP A . n A 1 9 SER 9 424 424 SER SER A . n A 1 10 PRO 10 425 425 PRO PRO A . n A 1 11 TRP 11 426 426 TRP TRP A . n A 1 12 SER 12 427 427 SER SER A . n A 1 13 SER 13 428 428 SER SER A . n A 1 14 CYS 14 429 429 CYS CYS A . n A 1 15 SER 15 430 430 SER SER A . n A 1 16 VAL 16 431 431 VAL VAL A . n A 1 17 THR 17 432 432 THR THR A . n A 1 18 CYS 18 433 433 CYS CYS A . n A 1 19 GLY 19 434 434 GLY GLY A . n A 1 20 ASP 20 435 435 ASP ASP A . n A 1 21 GLY 21 436 436 GLY GLY A . n A 1 22 VAL 22 437 437 VAL VAL A . n A 1 23 ILE 23 438 438 ILE ILE A . n A 1 24 THR 24 439 439 THR THR A . n A 1 25 ARG 25 440 440 ARG ARG A . n A 1 26 ILE 26 441 441 ILE ILE A . n A 1 27 ARG 27 442 442 ARG ARG A . n A 1 28 LEU 28 443 443 LEU LEU A . n A 1 29 CYS 29 444 444 CYS CYS A . n A 1 30 ASN 30 445 445 ASN ASN A . n A 1 31 SER 31 446 446 SER SER A . n A 1 32 PRO 32 447 447 PRO PRO A . n A 1 33 SER 33 448 448 SER SER A . n A 1 34 PRO 34 449 449 PRO PRO A . n A 1 35 GLN 35 450 450 GLN GLN A . n A 1 36 MET 36 451 451 MET MET A . n A 1 37 ASN 37 452 452 ASN ASN A . n A 1 38 GLY 38 453 453 GLY GLY A . n A 1 39 LYS 39 454 454 LYS LYS A . n A 1 40 PRO 40 455 455 PRO PRO A . n A 1 41 CYS 41 456 456 CYS CYS A . n A 1 42 GLU 42 457 457 GLU GLU A . n A 1 43 GLY 43 458 458 GLY GLY A . n A 1 44 GLU 44 459 459 GLU GLU A . n A 1 45 ALA 45 460 460 ALA ALA A . n A 1 46 ARG 46 461 461 ARG ARG A . n A 1 47 GLU 47 462 462 GLU GLU A . n A 1 48 THR 48 463 463 THR THR A . n A 1 49 LYS 49 464 464 LYS LYS A . n A 1 50 ALA 50 465 465 ALA ALA A . n A 1 51 CYS 51 466 466 CYS CYS A . n A 1 52 LYS 52 467 467 LYS LYS A . n A 1 53 LYS 53 468 468 LYS LYS A . n A 1 54 ASP 54 469 469 ASP ASP A . n A 1 55 ALA 55 470 470 ALA ALA A . n A 1 56 CYS 56 471 471 CYS CYS A . n A 1 57 PRO 57 472 472 PRO PRO A . n A 1 58 ILE 58 473 473 ILE ILE A . n A 1 59 ASN 59 474 474 ASN ASN A . n A 1 60 GLY 60 475 475 GLY GLY A . n A 1 61 GLY 61 476 476 GLY GLY A . n A 1 62 TRP 62 477 477 TRP TRP A . n A 1 63 GLY 63 478 478 GLY GLY A . n A 1 64 PRO 64 479 479 PRO PRO A . n A 1 65 TRP 65 480 480 TRP TRP A . n A 1 66 SER 66 481 481 SER SER A . n A 1 67 PRO 67 482 482 PRO PRO A . n A 1 68 TRP 68 483 483 TRP TRP A . n A 1 69 ASP 69 484 484 ASP ASP A . n A 1 70 ILE 70 485 485 ILE ILE A . n A 1 71 CYS 71 486 486 CYS CYS A . n A 1 72 SER 72 487 487 SER SER A . n A 1 73 VAL 73 488 488 VAL VAL A . n A 1 74 THR 74 489 489 THR THR A . n A 1 75 CYS 75 490 490 CYS CYS A . n A 1 76 GLY 76 491 491 GLY GLY A . n A 1 77 GLY 77 492 492 GLY GLY A . n A 1 78 GLY 78 493 493 GLY GLY A . n A 1 79 VAL 79 494 494 VAL VAL A . n A 1 80 GLN 80 495 495 GLN GLN A . n A 1 81 LYS 81 496 496 LYS LYS A . n A 1 82 ARG 82 497 497 ARG ARG A . n A 1 83 SER 83 498 498 SER SER A . n A 1 84 ARG 84 499 499 ARG ARG A . n A 1 85 LEU 85 500 500 LEU LEU A . n A 1 86 CYS 86 501 501 CYS CYS A . n A 1 87 ASN 87 502 502 ASN ASN A . n A 1 88 ASN 88 503 503 ASN ASN A . n A 1 89 PRO 89 504 504 PRO PRO A . n A 1 90 THR 90 505 505 THR THR A . n A 1 91 PRO 91 506 506 PRO PRO A . n A 1 92 GLN 92 507 507 GLN GLN A . n A 1 93 PHE 93 508 508 PHE PHE A . n A 1 94 GLY 94 509 509 GLY GLY A . n A 1 95 GLY 95 510 510 GLY GLY A . n A 1 96 LYS 96 511 511 LYS LYS A . n A 1 97 ASP 97 512 512 ASP ASP A . n A 1 98 CYS 98 513 513 CYS CYS A . n A 1 99 VAL 99 514 514 VAL VAL A . n A 1 100 GLY 100 515 515 GLY GLY A . n A 1 101 ASP 101 516 516 ASP ASP A . n A 1 102 VAL 102 517 517 VAL VAL A . n A 1 103 THR 103 518 518 THR THR A . n A 1 104 GLU 104 519 519 GLU GLU A . n A 1 105 ASN 105 520 520 ASN ASN A . n A 1 106 GLN 106 521 521 GLN GLN A . n A 1 107 ILE 107 522 522 ILE ILE A . n A 1 108 CYS 108 523 523 CYS CYS A . n A 1 109 ASN 109 524 524 ASN ASN A . n A 1 110 LYS 110 525 525 LYS LYS A . n A 1 111 GLN 111 526 526 GLN GLN A . n A 1 112 ASP 112 527 527 ASP ASP A . n A 1 113 CYS 113 528 528 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUL 1 1432 1432 FUL FUC A . C 3 FUC 1 1489 1489 FUC FUC A . D 4 HOH 1 1001 1001 HOH HOH A . D 4 HOH 2 1002 1002 HOH HOH A . D 4 HOH 3 1003 1003 HOH HOH A . D 4 HOH 4 1004 1004 HOH HOH A . D 4 HOH 5 1005 1005 HOH HOH A . D 4 HOH 6 1006 1006 HOH HOH A . D 4 HOH 7 1007 1007 HOH HOH A . D 4 HOH 8 1008 1008 HOH HOH A . D 4 HOH 9 1009 1009 HOH HOH A . D 4 HOH 10 1010 1010 HOH HOH A . D 4 HOH 11 1011 1011 HOH HOH A . D 4 HOH 12 1012 1012 HOH HOH A . D 4 HOH 13 1013 1013 HOH HOH A . D 4 HOH 14 1014 1014 HOH HOH A . D 4 HOH 15 1015 1015 HOH HOH A . D 4 HOH 16 1016 1016 HOH HOH A . D 4 HOH 17 1017 1017 HOH HOH A . D 4 HOH 18 1018 1018 HOH HOH A . D 4 HOH 19 1019 1019 HOH HOH A . D 4 HOH 20 1020 1020 HOH HOH A . D 4 HOH 21 1021 1021 HOH HOH A . D 4 HOH 22 1022 1022 HOH HOH A . D 4 HOH 23 1023 1023 HOH HOH A . D 4 HOH 24 1024 1024 HOH HOH A . D 4 HOH 25 1025 1025 HOH HOH A . D 4 HOH 26 1026 1026 HOH HOH A . D 4 HOH 27 1027 1027 HOH HOH A . D 4 HOH 28 1028 1028 HOH HOH A . D 4 HOH 29 1029 1029 HOH HOH A . D 4 HOH 30 1030 1030 HOH HOH A . D 4 HOH 31 1031 1031 HOH HOH A . D 4 HOH 32 1032 1032 HOH HOH A . D 4 HOH 33 1033 1033 HOH HOH A . D 4 HOH 34 1034 1034 HOH HOH A . D 4 HOH 35 1035 1035 HOH HOH A . D 4 HOH 36 1036 1036 HOH HOH A . D 4 HOH 37 1037 1037 HOH HOH A . D 4 HOH 38 1038 1038 HOH HOH A . D 4 HOH 39 1039 1039 HOH HOH A . D 4 HOH 40 1040 1040 HOH HOH A . D 4 HOH 41 1041 1041 HOH HOH A . D 4 HOH 42 1042 1042 HOH HOH A . D 4 HOH 43 1043 1043 HOH HOH A . D 4 HOH 44 1044 1044 HOH HOH A . D 4 HOH 45 1045 1045 HOH HOH A . D 4 HOH 46 1046 1046 HOH HOH A . D 4 HOH 47 1047 1047 HOH HOH A . D 4 HOH 48 1048 1048 HOH HOH A . D 4 HOH 49 1049 1049 HOH HOH A . D 4 HOH 50 1050 1050 HOH HOH A . D 4 HOH 51 1051 1051 HOH HOH A . D 4 HOH 52 1052 1052 HOH HOH A . D 4 HOH 53 1053 1053 HOH HOH A . D 4 HOH 54 1054 1054 HOH HOH A . D 4 HOH 55 1055 1055 HOH HOH A . D 4 HOH 56 1056 1056 HOH HOH A . D 4 HOH 57 1057 1057 HOH HOH A . D 4 HOH 58 1058 1058 HOH HOH A . D 4 HOH 59 1059 1059 HOH HOH A . D 4 HOH 60 1060 1060 HOH HOH A . D 4 HOH 61 1061 1061 HOH HOH A . D 4 HOH 62 1062 1062 HOH HOH A . D 4 HOH 63 1063 1063 HOH HOH A . D 4 HOH 64 1064 1064 HOH HOH A . D 4 HOH 65 1065 1065 HOH HOH A . D 4 HOH 66 1066 1066 HOH HOH A . D 4 HOH 67 1067 1067 HOH HOH A . D 4 HOH 68 1068 1068 HOH HOH A . D 4 HOH 69 1069 1069 HOH HOH A . D 4 HOH 70 1070 1070 HOH HOH A . D 4 HOH 71 1071 1071 HOH HOH A . D 4 HOH 72 1072 1072 HOH HOH A . D 4 HOH 73 1073 1073 HOH HOH A . D 4 HOH 74 1074 1074 HOH HOH A . D 4 HOH 75 1075 1075 HOH HOH A . D 4 HOH 76 1076 1076 HOH HOH A . D 4 HOH 77 1077 1077 HOH HOH A . D 4 HOH 78 1078 1078 HOH HOH A . D 4 HOH 79 1079 1079 HOH HOH A . D 4 HOH 80 1080 1080 HOH HOH A . D 4 HOH 81 1081 1081 HOH HOH A . D 4 HOH 82 1082 1082 HOH HOH A . D 4 HOH 83 1083 1083 HOH HOH A . D 4 HOH 84 1084 1084 HOH HOH A . D 4 HOH 85 1085 1085 HOH HOH A . D 4 HOH 86 1086 1086 HOH HOH A . D 4 HOH 87 1087 1087 HOH HOH A . D 4 HOH 88 1088 1088 HOH HOH A . D 4 HOH 89 1089 1089 HOH HOH A . D 4 HOH 90 1090 1090 HOH HOH A . D 4 HOH 91 1091 1091 HOH HOH A . D 4 HOH 92 1092 1092 HOH HOH A . D 4 HOH 93 1093 1093 HOH HOH A . D 4 HOH 94 1094 1094 HOH HOH A . D 4 HOH 95 1095 1095 HOH HOH A . D 4 HOH 96 1096 1096 HOH HOH A . D 4 HOH 97 1097 1097 HOH HOH A . D 4 HOH 98 1098 1098 HOH HOH A . D 4 HOH 99 1099 1099 HOH HOH A . D 4 HOH 100 1100 1100 HOH HOH A . D 4 HOH 101 1101 1101 HOH HOH A . D 4 HOH 102 1102 1102 HOH HOH A . D 4 HOH 103 1103 1103 HOH HOH A . D 4 HOH 104 1104 1104 HOH HOH A . D 4 HOH 105 1105 1105 HOH HOH A . D 4 HOH 106 1106 1106 HOH HOH A . D 4 HOH 107 1107 1107 HOH HOH A . D 4 HOH 108 1108 1108 HOH HOH A . D 4 HOH 109 1109 1109 HOH HOH A . D 4 HOH 110 1110 1110 HOH HOH A . D 4 HOH 111 1111 1111 HOH HOH A . D 4 HOH 112 1112 1112 HOH HOH A . D 4 HOH 113 1113 1113 HOH HOH A . D 4 HOH 114 1114 1114 HOH HOH A . D 4 HOH 115 1115 1115 HOH HOH A . D 4 HOH 116 1116 1116 HOH HOH A . D 4 HOH 117 1117 1117 HOH HOH A . D 4 HOH 118 1118 1118 HOH HOH A . D 4 HOH 119 1119 1119 HOH HOH A . D 4 HOH 120 1120 1120 HOH HOH A . D 4 HOH 121 1121 1121 HOH HOH A . D 4 HOH 122 1122 1122 HOH HOH A . D 4 HOH 123 1123 1123 HOH HOH A . D 4 HOH 124 1124 1124 HOH HOH A . D 4 HOH 125 1125 1125 HOH HOH A . D 4 HOH 126 1126 1126 HOH HOH A . D 4 HOH 127 1127 1127 HOH HOH A . D 4 HOH 128 1128 1128 HOH HOH A . D 4 HOH 129 1129 1129 HOH HOH A . D 4 HOH 130 1130 1130 HOH HOH A . D 4 HOH 131 1131 1131 HOH HOH A . D 4 HOH 132 1132 1132 HOH HOH A . D 4 HOH 133 1133 1133 HOH HOH A . D 4 HOH 134 1134 1134 HOH HOH A . D 4 HOH 135 1135 1135 HOH HOH A . D 4 HOH 136 1136 1136 HOH HOH A . D 4 HOH 137 1137 1137 HOH HOH A . D 4 HOH 138 1138 1138 HOH HOH A . D 4 HOH 139 1139 1139 HOH HOH A . D 4 HOH 140 1140 1140 HOH HOH A . D 4 HOH 141 1141 1141 HOH HOH A . D 4 HOH 142 1142 1142 HOH HOH A . D 4 HOH 143 1143 1143 HOH HOH A . D 4 HOH 144 1144 1144 HOH HOH A . D 4 HOH 145 1145 1145 HOH HOH A . D 4 HOH 146 1146 1146 HOH HOH A . D 4 HOH 147 1147 1147 HOH HOH A . D 4 HOH 148 1148 1148 HOH HOH A . D 4 HOH 149 1149 1149 HOH HOH A . D 4 HOH 150 1150 1150 HOH HOH A . D 4 HOH 151 1151 1151 HOH HOH A . D 4 HOH 152 1152 1152 HOH HOH A . D 4 HOH 153 1153 1153 HOH HOH A . D 4 HOH 154 1154 1154 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A THR 17 A THR 432 ? THR 'GLYCOSYLATION SITE' 2 A THR 74 A THR 489 ? THR 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-18 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 HKL-2000 'data reduction' . ? 2 MLPHARE phasing . ? 3 X-PLOR refinement 3.851 ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 490 ? ? -169.58 -65.86 2 1 ASN A 502 ? ? -145.07 17.97 3 1 ASN A 524 ? ? 48.15 29.86 4 1 ASP A 527 ? ? -30.99 105.12 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id FUC _pdbx_validate_chiral.auth_seq_id 1489 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc FUL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpb FUL 'COMMON NAME' GMML 1.0 b-L-fucopyranose FUL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Fucp FUL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 beta-L-fucopyranose FUL 3 alpha-L-fucopyranose FUC 4 water HOH #