data_1LTE # _entry.id 1LTE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LTE WWPDB D_1000174830 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LTE _pdbx_database_status.recvd_initial_deposition_date 1991-06-25 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shaanan, B.' 1 'Lis, H.' 2 'Sharon, N.' 3 # _citation.id primary _citation.title 'Structure of a legume lectin with an ordered N-linked carbohydrate in complex with lactose.' _citation.journal_abbrev Science _citation.journal_volume 254 _citation.page_first 862 _citation.page_last 866 _citation.year 1991 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1948067 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shaanan, B.' 1 ? primary 'Lis, H.' 2 ? primary 'Sharon, N.' 3 ? # _cell.entry_id 1LTE _cell.length_a 84.400 _cell.length_b 73.050 _cell.length_c 71.400 _cell.angle_alpha 90.00 _cell.angle_beta 113.42 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1LTE _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CORAL TREE LECTIN' 26251.205 1 ? ? ? ? 2 branched man ;Xylitol-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1191.095 1 ? ? ? ? 3 branched man 'beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 342.297 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 water nat water 18.015 100 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name beta-lactose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VETISFSFSEFEPGNDNLTLQGASLITQSGVLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSIEQ PYTRPLPADGLVFFMGPTKSKPAQGYGYLGIFNQSKQDNSYQTLGVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQL DNGQVANVVIKYDASSKLLHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFQASLPE ; _entity_poly.pdbx_seq_one_letter_code_can ;VETISFSFSEFEPGNDNLTLQGASLITQSGVLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSIEQ PYTRPLPADGLVFFMGPTKSKPAQGYGYLGIFNQSKQDNSYQTLGVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQL DNGQVANVVIKYDASSKLLHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFQASLPE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLU n 1 3 THR n 1 4 ILE n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 PHE n 1 9 SER n 1 10 GLU n 1 11 PHE n 1 12 GLU n 1 13 PRO n 1 14 GLY n 1 15 ASN n 1 16 ASP n 1 17 ASN n 1 18 LEU n 1 19 THR n 1 20 LEU n 1 21 GLN n 1 22 GLY n 1 23 ALA n 1 24 SER n 1 25 LEU n 1 26 ILE n 1 27 THR n 1 28 GLN n 1 29 SER n 1 30 GLY n 1 31 VAL n 1 32 LEU n 1 33 GLN n 1 34 LEU n 1 35 THR n 1 36 LYS n 1 37 ILE n 1 38 ASN n 1 39 GLN n 1 40 ASN n 1 41 GLY n 1 42 MET n 1 43 PRO n 1 44 ALA n 1 45 TRP n 1 46 ASP n 1 47 SER n 1 48 THR n 1 49 GLY n 1 50 ARG n 1 51 THR n 1 52 LEU n 1 53 TYR n 1 54 ALA n 1 55 LYS n 1 56 PRO n 1 57 VAL n 1 58 HIS n 1 59 ILE n 1 60 TRP n 1 61 ASP n 1 62 MET n 1 63 THR n 1 64 THR n 1 65 GLY n 1 66 THR n 1 67 VAL n 1 68 ALA n 1 69 SER n 1 70 PHE n 1 71 GLU n 1 72 THR n 1 73 ARG n 1 74 PHE n 1 75 SER n 1 76 PHE n 1 77 SER n 1 78 ILE n 1 79 GLU n 1 80 GLN n 1 81 PRO n 1 82 TYR n 1 83 THR n 1 84 ARG n 1 85 PRO n 1 86 LEU n 1 87 PRO n 1 88 ALA n 1 89 ASP n 1 90 GLY n 1 91 LEU n 1 92 VAL n 1 93 PHE n 1 94 PHE n 1 95 MET n 1 96 GLY n 1 97 PRO n 1 98 THR n 1 99 LYS n 1 100 SER n 1 101 LYS n 1 102 PRO n 1 103 ALA n 1 104 GLN n 1 105 GLY n 1 106 TYR n 1 107 GLY n 1 108 TYR n 1 109 LEU n 1 110 GLY n 1 111 ILE n 1 112 PHE n 1 113 ASN n 1 114 GLN n 1 115 SER n 1 116 LYS n 1 117 GLN n 1 118 ASP n 1 119 ASN n 1 120 SER n 1 121 TYR n 1 122 GLN n 1 123 THR n 1 124 LEU n 1 125 GLY n 1 126 VAL n 1 127 GLU n 1 128 PHE n 1 129 ASP n 1 130 THR n 1 131 PHE n 1 132 SER n 1 133 ASN n 1 134 PRO n 1 135 TRP n 1 136 ASP n 1 137 PRO n 1 138 PRO n 1 139 GLN n 1 140 VAL n 1 141 PRO n 1 142 HIS n 1 143 ILE n 1 144 GLY n 1 145 ILE n 1 146 ASP n 1 147 VAL n 1 148 ASN n 1 149 SER n 1 150 ILE n 1 151 ARG n 1 152 SER n 1 153 ILE n 1 154 LYS n 1 155 THR n 1 156 GLN n 1 157 PRO n 1 158 PHE n 1 159 GLN n 1 160 LEU n 1 161 ASP n 1 162 ASN n 1 163 GLY n 1 164 GLN n 1 165 VAL n 1 166 ALA n 1 167 ASN n 1 168 VAL n 1 169 VAL n 1 170 ILE n 1 171 LYS n 1 172 TYR n 1 173 ASP n 1 174 ALA n 1 175 SER n 1 176 SER n 1 177 LYS n 1 178 LEU n 1 179 LEU n 1 180 HIS n 1 181 ALA n 1 182 VAL n 1 183 LEU n 1 184 VAL n 1 185 TYR n 1 186 PRO n 1 187 SER n 1 188 SER n 1 189 GLY n 1 190 ALA n 1 191 ILE n 1 192 TYR n 1 193 THR n 1 194 ILE n 1 195 ALA n 1 196 GLU n 1 197 ILE n 1 198 VAL n 1 199 ASP n 1 200 VAL n 1 201 LYS n 1 202 GLN n 1 203 VAL n 1 204 LEU n 1 205 PRO n 1 206 GLU n 1 207 TRP n 1 208 VAL n 1 209 ASP n 1 210 VAL n 1 211 GLY n 1 212 LEU n 1 213 SER n 1 214 GLY n 1 215 ALA n 1 216 THR n 1 217 GLY n 1 218 ALA n 1 219 GLN n 1 220 ARG n 1 221 ASP n 1 222 ALA n 1 223 ALA n 1 224 GLU n 1 225 THR n 1 226 HIS n 1 227 ASP n 1 228 VAL n 1 229 TYR n 1 230 SER n 1 231 TRP n 1 232 SER n 1 233 PHE n 1 234 GLN n 1 235 ALA n 1 236 SER n 1 237 LEU n 1 238 PRO n 1 239 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'coral tree' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Erythrina corallodendron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3843 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEC_ERYCO _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P16404 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MATYKLCSVLALSLTLFLLILNKVNSVETISFSFSEFEPGNDNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYA KPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGIFNNSKQDNSYQTLGVEFDTFSNP WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSG ATGAQRDAAETHDVYSWSFQASLPETNDAVIPTSNHNTFAI ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LTE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 239 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16404 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 239 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1LTE SER A 24 ? UNP P16404 ALA 50 conflict 24 1 1 1LTE GLN A 114 ? UNP P16404 ASN 140 conflict 114 2 1 1LTE LEU A 178 ? UNP P16404 ILE 204 conflict 178 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose ? 'C6 H12 O6' 180.156 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYL D-saccharide . Xylitol ? 'C5 H12 O5' 152.146 # _exptl.entry_id 1LTE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.84 _exptl_crystal.density_percent_sol 68.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1LTE _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.19 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;FOR THE LACTOSE LIGAND, RESIDUES GLC 401 AND GAL 402 ARE BARELY DETECTABLE IN ELECTRON DENSITY BEYOND THE GLYCOSIDIC BOND. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1857 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 105 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 2062 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1LTE _struct.title 'STRUCTURE OF A LEGUME LECTIN WITH AN ORDERED N-LINKED CARBOHYDRATE IN COMPLEX WITH LACTOSE' _struct.pdbx_descriptor 'LECTIN COMPLEX WITH LACTOSE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LTE _struct_keywords.pdbx_keywords LECTIN _struct_keywords.text LECTIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 105 ? LEU A 109 ? GLY A 105 LEU A 109 5 ? 5 HELX_P HELX_P2 2 ASP A 118 ? GLN A 122 ? ASP A 118 GLN A 122 5 ? 5 HELX_P HELX_P3 3 ASP A 199 ? LEU A 204 ? ASP A 199 LEU A 204 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A ASN 17 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 17 B NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale3 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.418 ? ? covale5 covale one ? B BMA . O2 ? ? ? 1_555 B XYL . C1 ? ? B BMA 3 B XYL 4 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale6 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale7 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 6 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale8 covale both ? C BGC . O4 ? ? ? 1_555 C GAL . C1 ? ? C BGC 1 C GAL 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? metalc1 metalc ? ? A GLU 127 OE2 ? ? ? 1_555 D MN . MN ? ? A GLU 127 A MN 289 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc2 metalc ? ? A ASP 129 OD2 ? ? ? 1_555 D MN . MN ? ? A ASP 129 A MN 289 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc3 metalc ? ? A ASP 129 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 129 A CA 290 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc4 metalc ? ? A ASP 129 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 129 A CA 290 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc5 metalc ? ? A PHE 131 O ? ? ? 1_555 E CA . CA ? ? A PHE 131 A CA 290 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc6 metalc ? ? A ASN 133 OD1 ? ? ? 1_555 E CA . CA ? ? A ASN 133 A CA 290 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc7 metalc ? ? A ASP 136 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 136 A MN 289 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc8 metalc ? ? A ASP 136 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 136 A CA 290 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc9 metalc ? ? D MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 289 A HOH 807 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc10 metalc ? ? D MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 289 A HOH 808 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc11 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 290 A HOH 801 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 290 A HOH 809 1_555 ? ? ? ? ? ? ? 2.318 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 84 A . ? ARG 84 A PRO 85 A ? PRO 85 A 1 -5.04 2 ALA 88 A . ? ALA 88 A ASP 89 A ? ASP 89 A 1 -0.73 3 VAL 140 A . ? VAL 140 A PRO 141 A ? PRO 141 A 1 -2.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 7 ? C ? 7 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 190 ? ILE A 197 ? ALA A 190 ILE A 197 A 2 LEU A 178 ? TYR A 185 ? LEU A 178 TYR A 185 A 3 ALA A 166 ? ASP A 173 ? ALA A 166 ASP A 173 A 4 SER A 69 ? SER A 77 ? SER A 69 SER A 77 A 5 ASP A 227 ? LEU A 237 ? ASP A 227 LEU A 237 A 6 GLU A 2 ? PHE A 8 ? GLU A 2 PHE A 8 B 1 ALA A 190 ? ILE A 197 ? ALA A 190 ILE A 197 B 2 LEU A 178 ? TYR A 185 ? LEU A 178 TYR A 185 B 3 ALA A 166 ? ASP A 173 ? ALA A 166 ASP A 173 B 4 SER A 69 ? SER A 77 ? SER A 69 SER A 77 B 5 ASP A 227 ? LEU A 237 ? ASP A 227 LEU A 237 B 6 LEU A 32 ? GLN A 33 ? LEU A 32 GLN A 33 B 7 LEU A 25 ? ILE A 26 ? LEU A 25 ILE A 26 C 1 LYS A 154 ? PRO A 157 ? LYS A 154 PRO A 157 C 2 HIS A 142 ? VAL A 147 ? HIS A 142 VAL A 147 C 3 LEU A 124 ? ASP A 129 ? LEU A 124 ASP A 129 C 4 ASP A 89 ? GLY A 96 ? ASP A 89 GLY A 96 C 5 TRP A 207 ? THR A 216 ? TRP A 207 THR A 216 C 6 THR A 48 ? TYR A 53 ? THR A 48 TYR A 53 C 7 LEU A 18 ? GLY A 22 ? LEU A 18 GLY A 22 D 1 LYS A 154 ? PRO A 157 ? LYS A 154 PRO A 157 D 2 HIS A 142 ? VAL A 147 ? HIS A 142 VAL A 147 D 3 LEU A 124 ? ASP A 129 ? LEU A 124 ASP A 129 D 4 ASP A 89 ? GLY A 96 ? ASP A 89 GLY A 96 D 5 TRP A 207 ? THR A 216 ? TRP A 207 THR A 216 D 6 VAL A 57 ? HIS A 58 ? VAL A 57 HIS A 58 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 196 ? O GLU A 196 N LEU A 179 ? N LEU A 179 A 2 3 O VAL A 184 ? O VAL A 184 N ASN A 167 ? N ASN A 167 A 3 4 N TYR A 172 ? N TYR A 172 O PHE A 70 ? O PHE A 70 A 4 5 O SER A 77 ? O SER A 77 N ASP A 227 ? N ASP A 227 A 5 6 N LEU A 237 ? N LEU A 237 O GLU A 2 ? O GLU A 2 B 1 2 O GLU A 196 ? O GLU A 196 N LEU A 179 ? N LEU A 179 B 2 3 O VAL A 184 ? O VAL A 184 N ASN A 167 ? N ASN A 167 B 3 4 N TYR A 172 ? N TYR A 172 O PHE A 70 ? O PHE A 70 B 4 5 O SER A 77 ? O SER A 77 N ASP A 227 ? N ASP A 227 B 5 6 N VAL A 228 ? N VAL A 228 O LEU A 32 ? O LEU A 32 B 6 7 N GLN A 33 ? N GLN A 33 O LEU A 25 ? O LEU A 25 C 1 2 O GLN A 156 ? O GLN A 156 N ILE A 143 ? N ILE A 143 C 2 3 N ASP A 146 ? N ASP A 146 O GLY A 125 ? O GLY A 125 C 3 4 N PHE A 128 ? N PHE A 128 O LEU A 91 ? O LEU A 91 C 4 5 O GLY A 96 ? O GLY A 96 N ASP A 209 ? N ASP A 209 C 5 6 N GLY A 214 ? N GLY A 214 O GLY A 49 ? O GLY A 49 C 6 7 O LEU A 52 ? O LEU A 52 N THR A 19 ? N THR A 19 D 1 2 O GLN A 156 ? O GLN A 156 N ILE A 143 ? N ILE A 143 D 2 3 N ASP A 146 ? N ASP A 146 O GLY A 125 ? O GLY A 125 D 3 4 N PHE A 128 ? N PHE A 128 O LEU A 91 ? O LEU A 91 D 4 5 O GLY A 96 ? O GLY A 96 N ASP A 209 ? N ASP A 209 D 5 6 O VAL A 208 ? O VAL A 208 N VAL A 57 ? N VAL A 57 # _database_PDB_matrix.entry_id 1LTE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LTE _atom_sites.fract_transf_matrix[1][1] 0.011848 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005132 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015263 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'RESIDUES PRO 85 AND PRO 141 ARE CIS PROLINES. RESIDUE ASP 89 IS IN CIS CONFORMATION.' 2 ;N-LINKED CARBOHYDRATE (RESIDUES 301-307) ATTACHED TO ASN 17 (B1->2)XYL305 | ASN17-NAG301-(B1->4)-NAG303-(B1->4)-MAN304-(A1->3)MAN306 | | (A1->3)FUC302 (A1->6)MAN307 ; # loop_ _atom_type.symbol C CA MN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 TRP 135 135 135 TRP TRP A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 GLN 156 156 156 GLN GLN A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 TYR 172 172 172 TYR TYR A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 HIS 180 180 180 HIS HIS A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 PRO 186 186 186 PRO PRO A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 GLN 202 202 202 GLN GLN A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 GLN 219 219 219 GLN GLN A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 THR 225 225 225 THR THR A . n A 1 226 HIS 226 226 226 HIS HIS A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 VAL 228 228 228 VAL VAL A . n A 1 229 TYR 229 229 229 TYR TYR A . n A 1 230 SER 230 230 230 SER SER A . n A 1 231 TRP 231 231 231 TRP TRP A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 GLN 234 234 234 GLN GLN A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 PRO 238 238 238 PRO PRO A . n A 1 239 GLU 239 239 239 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 289 289 MN MN A . E 5 CA 1 290 290 CA CA A . F 6 HOH 1 801 801 HOH HOH A . F 6 HOH 2 802 802 HOH HOH A . F 6 HOH 3 803 803 HOH HOH A . F 6 HOH 4 804 804 HOH HOH A . F 6 HOH 5 805 805 HOH HOH A . F 6 HOH 6 806 806 HOH HOH A . F 6 HOH 7 807 807 HOH HOH A . F 6 HOH 8 808 808 HOH HOH A . F 6 HOH 9 809 809 HOH HOH A . F 6 HOH 10 810 810 HOH HOH A . F 6 HOH 11 811 811 HOH HOH A . F 6 HOH 12 812 812 HOH HOH A . F 6 HOH 13 813 813 HOH HOH A . F 6 HOH 14 814 814 HOH HOH A . F 6 HOH 15 815 815 HOH HOH A . F 6 HOH 16 816 816 HOH HOH A . F 6 HOH 17 817 817 HOH HOH A . F 6 HOH 18 818 818 HOH HOH A . F 6 HOH 19 819 819 HOH HOH A . F 6 HOH 20 820 820 HOH HOH A . F 6 HOH 21 821 821 HOH HOH A . F 6 HOH 22 822 822 HOH HOH A . F 6 HOH 23 823 823 HOH HOH A . F 6 HOH 24 825 825 HOH HOH A . F 6 HOH 25 826 826 HOH HOH A . F 6 HOH 26 827 827 HOH HOH A . F 6 HOH 27 829 829 HOH HOH A . F 6 HOH 28 830 830 HOH HOH A . F 6 HOH 29 831 831 HOH HOH A . F 6 HOH 30 832 832 HOH HOH A . F 6 HOH 31 833 833 HOH HOH A . F 6 HOH 32 834 834 HOH HOH A . F 6 HOH 33 835 835 HOH HOH A . F 6 HOH 34 836 836 HOH HOH A . F 6 HOH 35 837 837 HOH HOH A . F 6 HOH 36 838 838 HOH HOH A . F 6 HOH 37 839 839 HOH HOH A . F 6 HOH 38 840 840 HOH HOH A . F 6 HOH 39 841 841 HOH HOH A . F 6 HOH 40 842 842 HOH HOH A . F 6 HOH 41 843 843 HOH HOH A . F 6 HOH 42 844 844 HOH HOH A . F 6 HOH 43 845 845 HOH HOH A . F 6 HOH 44 846 846 HOH HOH A . F 6 HOH 45 847 847 HOH HOH A . F 6 HOH 46 848 848 HOH HOH A . F 6 HOH 47 849 849 HOH HOH A . F 6 HOH 48 850 850 HOH HOH A . F 6 HOH 49 851 851 HOH HOH A . F 6 HOH 50 852 852 HOH HOH A . F 6 HOH 51 853 853 HOH HOH A . F 6 HOH 52 854 854 HOH HOH A . F 6 HOH 53 855 855 HOH HOH A . F 6 HOH 54 856 856 HOH HOH A . F 6 HOH 55 857 857 HOH HOH A . F 6 HOH 56 858 858 HOH HOH A . F 6 HOH 57 860 860 HOH HOH A . F 6 HOH 58 861 861 HOH HOH A . F 6 HOH 59 863 863 HOH HOH A . F 6 HOH 60 865 865 HOH HOH A . F 6 HOH 61 867 867 HOH HOH A . F 6 HOH 62 869 869 HOH HOH A . F 6 HOH 63 870 870 HOH HOH A . F 6 HOH 64 871 871 HOH HOH A . F 6 HOH 65 872 872 HOH HOH A . F 6 HOH 66 873 873 HOH HOH A . F 6 HOH 67 875 875 HOH HOH A . F 6 HOH 68 876 876 HOH HOH A . F 6 HOH 69 877 877 HOH HOH A . F 6 HOH 70 880 880 HOH HOH A . F 6 HOH 71 881 881 HOH HOH A . F 6 HOH 72 882 882 HOH HOH A . F 6 HOH 73 886 886 HOH HOH A . F 6 HOH 74 887 887 HOH HOH A . F 6 HOH 75 888 888 HOH HOH A . F 6 HOH 76 889 889 HOH HOH A . F 6 HOH 77 890 890 HOH HOH A . F 6 HOH 78 891 891 HOH HOH A . F 6 HOH 79 892 892 HOH HOH A . F 6 HOH 80 894 894 HOH HOH A . F 6 HOH 81 895 895 HOH HOH A . F 6 HOH 82 896 896 HOH HOH A . F 6 HOH 83 906 906 HOH HOH A . F 6 HOH 84 910 910 HOH HOH A . F 6 HOH 85 911 911 HOH HOH A . F 6 HOH 86 912 912 HOH HOH A . F 6 HOH 87 913 913 HOH HOH A . F 6 HOH 88 921 921 HOH HOH A . F 6 HOH 89 922 922 HOH HOH A . F 6 HOH 90 924 924 HOH HOH A . F 6 HOH 91 925 925 HOH HOH A . F 6 HOH 92 927 927 HOH HOH A . F 6 HOH 93 929 929 HOH HOH A . F 6 HOH 94 932 932 HOH HOH A . F 6 HOH 95 934 934 HOH HOH A . F 6 HOH 96 935 935 HOH HOH A . F 6 HOH 97 937 937 HOH HOH A . F 6 HOH 98 941 941 HOH HOH A . F 6 HOH 99 942 942 HOH HOH A . F 6 HOH 100 943 943 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900004 _pdbx_molecule_features.name beta-lactose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900004 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 17 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 17 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -28.3792311387 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 65.5177780452 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 813 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 127 ? A GLU 127 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 95.4 ? 2 OE2 ? A GLU 127 ? A GLU 127 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 OD1 ? A ASP 136 ? A ASP 136 ? 1_555 168.2 ? 3 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 OD1 ? A ASP 136 ? A ASP 136 ? 1_555 92.4 ? 4 OE2 ? A GLU 127 ? A GLU 127 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 807 ? 1_555 86.4 ? 5 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 807 ? 1_555 88.7 ? 6 OD1 ? A ASP 136 ? A ASP 136 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 807 ? 1_555 84.9 ? 7 OE2 ? A GLU 127 ? A GLU 127 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 808 ? 1_555 89.4 ? 8 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 808 ? 1_555 174.9 ? 9 OD1 ? A ASP 136 ? A ASP 136 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 808 ? 1_555 82.7 ? 10 O ? F HOH . ? A HOH 807 ? 1_555 MN ? D MN . ? A MN 289 ? 1_555 O ? F HOH . ? A HOH 808 ? 1_555 89.8 ? 11 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 51.6 ? 12 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? A PHE 131 ? A PHE 131 ? 1_555 74.9 ? 13 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? A PHE 131 ? A PHE 131 ? 1_555 110.3 ? 14 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 148.5 ? 15 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 158.8 ? 16 O ? A PHE 131 ? A PHE 131 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 87.5 ? 17 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 114.2 ? 18 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 83.6 ? 19 O ? A PHE 131 ? A PHE 131 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 81.4 ? 20 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 88.0 ? 21 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 801 ? 1_555 112.9 ? 22 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 801 ? 1_555 76.2 ? 23 O ? A PHE 131 ? A PHE 131 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 801 ? 1_555 172.1 ? 24 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 801 ? 1_555 85.3 ? 25 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 801 ? 1_555 95.2 ? 26 OD1 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 75.2 ? 27 OD2 ? A ASP 129 ? A ASP 129 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 111.3 ? 28 O ? A PHE 131 ? A PHE 131 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 90.1 ? 29 OD1 ? A ASN 133 ? A ASN 133 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 79.0 ? 30 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 164.8 ? 31 O ? F HOH . ? A HOH 801 ? 1_555 CA ? E CA . ? A CA 290 ? 1_555 O ? F HOH . ? A HOH 809 ? 1_555 91.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' pdbx_struct_conn_angle 17 4 'Structure model' pdbx_struct_special_symmetry 18 4 'Structure model' struct_asym 19 4 'Structure model' struct_conn 20 4 'Structure model' struct_ref_seq_dif 21 4 'Structure model' struct_site 22 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_database_status.process_site' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 25 4 'Structure model' '_struct_conn.conn_type_id' 26 4 'Structure model' '_struct_conn.id' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.pdbx_role' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _pdbx_entry_details.entry_id 1LTE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;N-LINKED CARBOHYDRATE (RESIDUES 301-307) ATTACHED TO ASN 17 (B1->2)XYL305 | ASN17-NAG301-(B1->4)-NAG303-(B1->4)-MAN304-(A1->3)MAN306 | | (A1->3)FUC302 (A1->6)MAN307 ; _pdbx_entry_details.sequence_details ;SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: LEC_ERYCO SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE ALA 24 SER 24 ASN 114 GLN 114 GLN 134 PRO 134 ILE 178 LEU 178 THE LECTINS ARE KNOWN TO APPEAR IN SEVERAL ISOFORMS. THE SEQUENCE USED IN THIS ENTRY CORRESPONDS TO THE ONE THAT BEST FIT THE DENSITY MAP. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 814 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 860 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A GLU 2 ? ? CB A GLU 2 ? ? CG A GLU 2 ? ? 126.85 113.40 13.45 2.20 N 2 1 CD1 A TRP 45 ? ? CG A TRP 45 ? ? CD2 A TRP 45 ? ? 112.47 106.30 6.17 0.80 N 3 1 CE2 A TRP 45 ? ? CD2 A TRP 45 ? ? CG A TRP 45 ? ? 101.74 107.30 -5.56 0.80 N 4 1 CB A ARG 50 ? ? CG A ARG 50 ? ? CD A ARG 50 ? ? 91.93 111.60 -19.67 2.60 N 5 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH1 A ARG 50 ? ? 125.54 120.30 5.24 0.50 N 6 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 112.67 120.30 -7.63 0.50 N 7 1 CD1 A TRP 60 ? ? CG A TRP 60 ? ? CD2 A TRP 60 ? ? 112.88 106.30 6.58 0.80 N 8 1 CE2 A TRP 60 ? ? CD2 A TRP 60 ? ? CG A TRP 60 ? ? 101.46 107.30 -5.84 0.80 N 9 1 CB A VAL 92 ? ? CA A VAL 92 ? ? C A VAL 92 ? ? 94.66 111.40 -16.74 1.90 N 10 1 CD1 A TRP 135 ? ? CG A TRP 135 ? ? CD2 A TRP 135 ? ? 112.46 106.30 6.16 0.80 N 11 1 CE2 A TRP 135 ? ? CD2 A TRP 135 ? ? CG A TRP 135 ? ? 102.01 107.30 -5.29 0.80 N 12 1 N A ARG 151 ? ? CA A ARG 151 ? ? CB A ARG 151 ? ? 99.56 110.60 -11.04 1.80 N 13 1 N A ASP 161 ? ? CA A ASP 161 ? ? C A ASP 161 ? ? 94.66 111.00 -16.34 2.70 N 14 1 CA A HIS 180 ? ? CB A HIS 180 ? ? CG A HIS 180 ? ? 126.36 113.60 12.76 1.70 N 15 1 CB A ILE 194 ? ? CA A ILE 194 ? ? C A ILE 194 ? ? 98.07 111.60 -13.53 2.00 N 16 1 CB A ASP 199 ? ? CG A ASP 199 ? ? OD1 A ASP 199 ? ? 126.13 118.30 7.83 0.90 N 17 1 CD1 A TRP 207 ? ? CG A TRP 207 ? ? CD2 A TRP 207 ? ? 112.08 106.30 5.78 0.80 N 18 1 CE2 A TRP 207 ? ? CD2 A TRP 207 ? ? CG A TRP 207 ? ? 101.88 107.30 -5.42 0.80 N 19 1 CD1 A TRP 231 ? ? CG A TRP 231 ? ? CD2 A TRP 231 ? ? 111.88 106.30 5.58 0.80 N 20 1 CE2 A TRP 231 ? ? CD2 A TRP 231 ? ? CG A TRP 231 ? ? 102.12 107.30 -5.18 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 103 ? ? -97.72 -144.76 2 1 TYR A 106 ? ? 54.58 -136.56 3 1 GLN A 114 ? ? -164.24 -169.72 4 1 HIS A 226 ? ? -150.40 77.09 5 1 PRO A 238 ? ? -67.80 93.44 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 301 n B 2 NAG 2 B NAG 2 A NAG 303 n B 2 BMA 3 B BMA 3 A BMA 304 n B 2 XYL 4 B XYL 4 A XYL 305 n B 2 MAN 5 B MAN 5 A MAN 306 n B 2 MAN 6 B MAN 6 A MAN 307 n B 2 FUC 7 B FUC 7 A FUC 302 n C 3 BGC 1 C BGC 1 A BGC 401 n C 3 GAL 2 C GAL 2 A GAL 402 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(2+1)][<C5O4>]{}[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}} ; LINUCS PDB-CARE ? 2 3 DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 3 3 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 XYL C1 H11 3 BMA O2 HO2 sing ? 4 2 5 MAN C1 O1 3 BMA O3 HO3 sing ? 5 2 6 MAN C1 O1 3 BMA O6 HO6 sing ? 6 2 7 FUC C1 O1 1 NAG O3 HO3 sing ? 7 3 2 GAL C1 O1 1 BGC O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 XYL 4 n 2 MAN 5 n 2 MAN 6 n 2 FUC 7 n 3 BGC 1 n 3 GAL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 'CALCIUM ION' CA 6 water HOH #