HEADER TRANSFERASE/DNA 24-MAY-02 1LV5 TITLE CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA TITLE 2 POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3'; COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRIMER STRAND; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3'; COMPND 8 CHAIN: D, F; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: TEMPLATE STRAND; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA POLYMERASE I; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW COMPND 15 FRAGMENT); COMPND 16 EC: 2.7.7.7; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 7 ORGANISM_TAXID: 1422; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-30A(+); SOURCE 13 OTHER_DETAILS: THIS PROTEIN WAS ISOLATED FROM AN AS YET UNNAMED SOURCE 14 NOVEL STRAIN OF BACILLUS STEAROTHERMOPHILUS (SEE REF 2). KEYWDS DNA POLYMERASE I, DNA REPLICATION, KLENOW FRAGMENT, PROTEIN-DNA-DNTP KEYWDS 2 COMPLEX, CLOSED CONFORMATION, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.JOHNSON,J.S.TAYLOR,L.S.BEESE REVDAT 3 14-FEB-24 1LV5 1 REMARK LINK REVDAT 2 24-FEB-09 1LV5 1 VERSN REVDAT 1 25-MAR-03 1LV5 0 JRNL AUTH S.J.JOHNSON,J.S.TAYLOR,L.S.BEESE JRNL TITL PROCESSIVE DNA SYNTHESIS OBSERVED IN A POLYMERASE CRYSTAL JRNL TITL 2 SUGGESTS A MECHANISM FOR THE PREVENTION OF FRAMESHIFT JRNL TITL 3 MUTATIONS JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 3895 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12649320 JRNL DOI 10.1073/PNAS.0630532100 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.KIEFER,C.MAO,J.C.BRAMAN,L.S.BEESE REMARK 1 TITL VISUALIZING DNA REPLICATION IN A CATALYTICALLY ACTIVE REMARK 1 TITL 2 BACILLUS DNA POLYMERASE CRYSTAL REMARK 1 REF NATURE V. 391 304 1998 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/34693 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.KIEFER,C.MAO,C.J.HANSEN,S.L.BASEHORE,H.H.HOGREFE, REMARK 1 AUTH 2 J.C.BRAMAN,L.S.BEESE REMARK 1 TITL CRYSTAL STRUCTURE OF A THERMOSTABLE BACILLUS DNA POLYMERASE REMARK 1 TITL 2 I LARGE FRAGMENT AT 2.1 A RESOLUTION REMARK 1 REF STRUCTURE V. 5 95 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(97)00169-X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.2 REMARK 3 NUMBER OF REFLECTIONS : 96536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 4574 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 39.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4895 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 259 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9294 REMARK 3 NUCLEIC ACID ATOMS : 974 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.420 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.660 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.120 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 47.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-MULTI-ENDO.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : DCTP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA-MULTI-ENDO.TOP REMARK 3 TOPOLOGY FILE 3 : ATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : DCTP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CRYSTAL WAS TWINNED, WITH A PARTIAL TWINNING FRACTION OF 0.485. REMARK 3 DETWINNING OF THE DATA WAS PERFORMED BY TREATING THE DATA AS REMARK 3 PERFECTLY TWINNED, USING THE DETWIN_PERFECT.INP ROUTINE IN CNS. REMARK 3 THE BACILLUS POLYMERASE WAS CO-CRYSTALLIZED WITH DDATP, DCTP, AND REMARK 3 A DNA REMARK 3 CONTAINING A 9 BASE PAIR DUPLEX, A 4 BASE 5' TEMPLATE OVERHANG, REMARK 3 AND A REMARK 3 SINGLE BASE 3' TEMPLATE OVERHANG. THE 3' OVERHANG ON THE TEMPLATE REMARK 3 STRAND REMARK 3 ASSURED THAT THE DNA DUPLEX WAS NOT BOUND BACKWARDS BY THE REMARK 3 POLYMERASE REMARK 3 DURING CRYSTALLIZATION. DDATP WAS INCORPORATED ONTO THE 3' REMARK 3 TERMINUS OF REMARK 3 THE PRIMER STRAND. DCTP WAS NOT INCORPORATED ONTO THE PRIMER REMARK 3 STRAND, BUT REMARK 3 WAS PAIRED OPPOSITE THE NEXT TEMPLATE BASE. THUS, THE RESULTING REMARK 3 STRUCTURE REMARK 3 CONTAINED A 10 BASE PAIR DNA DUPLEX WITH A 3' PRIMER TERMINUS AND REMARK 3 A 3 BASE REMARK 3 5' TEMPLATE OVERHANG. REMARK 3 ELECTRON DENSITY WAS OBSERVED FOR ALL PROTEIN SIDE CHAINS EXCEPT REMARK 3 LYSINE REMARK 3 298, WHICH WAS MODELLED TO THE BETA CARBON. THE MANGANESE AND REMARK 3 MAGNESIUM REMARK 3 ATOMS WERE ASSIGNED ON THE BASIS OF LOW B-FACTOR, PROXIMITY TO REMARK 3 COORDINATING RESIDUES, AND BY COMPARISON TO A RELATED KLENTAQ REMARK 3 POLYMERASE REMARK 3 STRUCTURE (3KTQ). THE DATA PREVENT A DEFINITIVE ASSIGNMENT REMARK 3 BETWEEN MG 205 REMARK 3 AND WATER. REMARK 4 REMARK 4 1LV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2BDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, MAGNESIUM SULFATE, REMARK 280 MPD, MES, MANGANESE SULFATE, PH 5.80, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.37200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.74400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 29 O3' REMARK 470 DA E 29 O3' REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS B 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 627 CA - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 298 109.86 -22.14 REMARK 500 LEU A 303 99.20 -67.51 REMARK 500 LEU A 312 50.80 -115.83 REMARK 500 ASP A 314 32.67 -80.03 REMARK 500 LYS A 315 118.59 178.61 REMARK 500 THR A 350 -77.16 -77.77 REMARK 500 ASP A 402 93.35 -173.15 REMARK 500 ALA A 421 39.02 -77.91 REMARK 500 ARG A 435 129.83 -36.16 REMARK 500 GLU A 440 -62.70 -24.36 REMARK 500 LEU A 477 -70.52 -124.30 REMARK 500 ASP A 496 82.29 -67.80 REMARK 500 GLN A 502 2.59 -61.39 REMARK 500 LYS A 505 -75.15 -55.14 REMARK 500 GLN A 510 1.96 -65.39 REMARK 500 LEU A 511 -72.77 -88.66 REMARK 500 GLN A 524 -140.40 -146.68 REMARK 500 GLU A 525 48.71 -144.69 REMARK 500 ILE A 528 -7.27 -50.29 REMARK 500 ILE A 537 43.35 -72.27 REMARK 500 LEU A 538 -79.73 -149.80 REMARK 500 GLN A 543 89.33 34.81 REMARK 500 THR A 552 -36.19 -138.50 REMARK 500 SER A 555 133.98 -39.84 REMARK 500 VAL A 560 -51.46 -126.33 REMARK 500 LEU A 564 47.92 -104.62 REMARK 500 ALA A 565 -60.69 -95.26 REMARK 500 HIS A 568 140.09 166.00 REMARK 500 GLU A 569 28.95 -79.58 REMARK 500 THR A 586 7.38 -62.01 REMARK 500 TYR A 587 -74.85 -145.47 REMARK 500 ASP A 598 -88.42 -63.32 REMARK 500 THR A 599 -12.95 -45.42 REMARK 500 ASN A 625 44.54 -140.20 REMARK 500 ILE A 628 -19.30 -163.90 REMARK 500 ASP A 653 -117.87 -93.81 REMARK 500 TYR A 654 116.76 171.74 REMARK 500 GLN A 656 59.18 30.07 REMARK 500 ILE A 689 -0.63 -57.78 REMARK 500 PHE A 690 -2.88 -146.32 REMARK 500 GLN A 691 -7.68 58.82 REMARK 500 ILE A 716 140.10 -11.19 REMARK 500 ASN A 724 -78.55 -59.11 REMARK 500 ARG A 819 81.98 44.18 REMARK 500 HIS A 829 -45.00 66.33 REMARK 500 ASP A 830 33.05 -152.22 REMARK 500 CYS A 845 -15.41 -45.93 REMARK 500 ALA A 855 -58.46 -29.10 REMARK 500 LEU B 303 76.08 -110.66 REMARK 500 MET B 311 30.42 -76.79 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 1 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCP A 201 O2A REMARK 620 2 DCP A 201 O2B 73.4 REMARK 620 3 DCP A 201 O2G 95.7 79.4 REMARK 620 4 ASP A 653 OD1 144.5 140.9 85.6 REMARK 620 5 ASP A 653 OD2 93.4 161.3 89.1 51.1 REMARK 620 6 TYR A 654 O 158.7 85.6 83.6 56.8 107.8 REMARK 620 7 ASP A 830 OD2 100.1 81.4 150.5 95.5 114.5 72.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCP A 201 O2A REMARK 620 2 ASP A 653 OD2 78.0 REMARK 620 3 ASP A 830 OD1 70.6 85.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 2 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCP B 202 O2G REMARK 620 2 DCP B 202 O2B 80.9 REMARK 620 3 DCP B 202 O2A 86.1 69.7 REMARK 620 4 ASP B 653 OD2 88.5 163.0 96.4 REMARK 620 5 TYR B 654 O 97.2 104.9 173.2 89.6 REMARK 620 6 ASP B 830 OD1 153.7 96.9 68.8 86.7 108.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L3S RELATED DB: PDB REMARK 900 1L3S IS THE WILD TYPE BACILLUS DNA POLYMERASE I BOUND TO A 9 BASE REMARK 900 PAIR DNA DUPLEX IN THE OPEN CONFORMATION REMARK 900 RELATED ID: 1L3T RELATED DB: PDB REMARK 900 1L3T IS A 10 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY REMARK 900 PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A REMARK 900 STABILIZATION SOLUTION CONTAINING DTTP. REMARK 900 RELATED ID: 1L3U RELATED DB: PDB REMARK 900 1L3U IS AN 11 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY REMARK 900 PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A REMARK 900 STABILIZATION SOLUTION CONTAINING DTTP AND DATP. REMARK 900 RELATED ID: 1L5U RELATED DB: PDB REMARK 900 1L5U IS A 12 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY REMARK 900 PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A REMARK 900 STABILIZATION SOLUTION CONTAINING DTTP, DATP, AND DCTP. REMARK 900 RELATED ID: 1L3V RELATED DB: PDB REMARK 900 1L3V IS A 15 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY REMARK 900 PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A REMARK 900 STABILIZATION SOLUTION CONTAINING DTTP, DATP, DCTP, AND DGTP. DBREF 1LV5 A 304 876 UNP P52026 DPO1_BACST 304 876 DBREF 1LV5 B 304 876 UNP P52026 DPO1_BACST 304 876 DBREF 1LV5 C 20 29 PDB 1LV5 1LV5 20 29 DBREF 1LV5 D 1 14 PDB 1LV5 1LV5 1 14 DBREF 1LV5 E 20 29 PDB 1LV5 1LV5 20 29 DBREF 1LV5 F 1 14 PDB 1LV5 1LV5 1 14 SEQRES 1 C 10 DG DG DA DT DC DA DG DC DG DA SEQRES 1 D 14 DA DC DG DT DC DG DC DT DG DA DT DC DC SEQRES 2 D 14 DG SEQRES 1 E 10 DG DG DA DT DC DA DG DC DG DA SEQRES 1 F 14 DA DC DG DT DC DG DC DT DG DA DT DC DC SEQRES 2 F 14 DG SEQRES 1 A 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 A 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 A 580 VAL GLU GLU ASN TYR HIS ALA ALA PRO ILE VAL GLY ILE SEQRES 4 A 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 A 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 A 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 A 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 A 580 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 A 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 A 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 A 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 A 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 A 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 A 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 A 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 A 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 A 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 A 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 A 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 A 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 A 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 A 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 A 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 A 580 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 A 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 A 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 A 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 A 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 A 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 A 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 A 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 A 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 33 A 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 A 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 A 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 A 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 A 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 A 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 A 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 A 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 A 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 A 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 A 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 A 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 A 580 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 B 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 B 580 VAL GLU GLU ASN TYR HIS ALA ALA PRO ILE VAL GLY ILE SEQRES 4 B 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 B 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 B 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 B 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 B 580 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 B 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 B 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 B 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 B 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 B 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 B 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 B 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 B 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 B 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 B 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 B 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 B 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 B 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 B 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 B 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 B 580 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 B 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 B 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 B 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 B 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 B 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 B 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 B 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 B 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 33 B 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 B 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 B 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 B 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 B 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 B 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 B 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 B 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 B 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 B 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 B 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 B 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 B 580 GLY SER THR TRP TYR ASP ALA LYS HET MN A 1 1 HET MG A 205 1 HET SO4 A 203 5 HET DCP A 201 28 HET MN B 2 1 HET SO4 B 204 5 HET DCP B 202 28 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 7 MN 2(MN 2+) FORMUL 8 MG MG 2+ FORMUL 9 SO4 2(O4 S 2-) FORMUL 10 DCP 2(C9 H16 N3 O13 P3) FORMUL 14 HOH *186(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 GLU A 476 1 7 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 THR A 513 1 18 HELIX 14 14 GLU A 515 GLY A 523 1 9 HELIX 15 15 SER A 530 ILE A 537 1 8 HELIX 16 16 SER A 557 GLU A 562 1 6 HELIX 17 17 ILE A 570 THR A 586 1 17 HELIX 18 18 TYR A 587 LYS A 593 1 7 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 PHE A 690 1 11 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 TYR A 714 1 17 HELIX 26 26 SER A 717 LEU A 725 1 9 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 ALA A 855 1 16 HELIX 32 32 THR B 308 ALA B 313 5 6 HELIX 33 33 ARG B 347 LEU B 352 1 6 HELIX 34 34 ASP B 354 GLY B 362 1 9 HELIX 35 35 ASP B 372 TRP B 382 1 11 HELIX 36 36 LEU B 394 ASP B 402 1 9 HELIX 37 37 PRO B 403 GLY B 406 5 4 HELIX 38 38 ASP B 409 MET B 416 1 8 HELIX 39 39 ASP B 425 GLY B 430 1 6 HELIX 40 40 ASP B 439 ASN B 468 1 30 HELIX 41 41 GLN B 470 GLU B 476 1 7 HELIX 42 42 LEU B 477 GLY B 492 1 16 HELIX 43 43 ASP B 496 GLU B 520 1 25 HELIX 44 44 GLN B 533 PHE B 539 1 7 HELIX 45 45 SER B 557 GLU B 562 1 6 HELIX 46 46 LEU B 564 HIS B 568 5 5 HELIX 47 47 GLU B 569 GLN B 584 1 16 HELIX 48 48 THR B 586 VAL B 595 1 10 HELIX 49 49 GLY B 633 ALA B 639 5 7 HELIX 50 50 GLN B 656 GLU B 667 1 12 HELIX 51 51 ASP B 668 ARG B 677 1 10 HELIX 52 52 ASP B 680 GLN B 691 1 12 HELIX 53 53 THR B 698 TYR B 714 1 17 HELIX 54 54 SER B 717 LEU B 725 1 9 HELIX 55 55 SER B 728 PHE B 743 1 16 HELIX 56 56 PHE B 743 GLY B 761 1 19 HELIX 57 57 PRO B 774 SER B 778 5 5 HELIX 58 58 ASN B 780 GLU B 818 1 39 HELIX 59 59 GLU B 840 GLN B 854 1 15 HELIX 60 60 THR B 871 ALA B 875 5 5 SHEET 1 A 6 THR A 302 ALA A 304 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N ASN A 339 O GLY A 342 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 ILE A 605 ASN A 607 0 SHEET 2 C 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 D 4 HIS A 823 GLN A 827 0 SHEET 2 D 4 LEU A 832 PRO A 837 -1 O ILE A 833 N LEU A 826 SHEET 3 D 4 TRP A 647 ALA A 652 -1 N PHE A 650 O LEU A 834 SHEET 4 D 4 TYR A 866 GLY A 869 -1 O GLY A 869 N ILE A 649 SHEET 1 E 2 TYR A 762 THR A 764 0 SHEET 2 E 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 F 6 THR B 302 LEU B 303 0 SHEET 2 F 6 GLY B 342 LEU B 346 1 O ARG B 343 N THR B 302 SHEET 3 F 6 ILE B 335 ASN B 339 -1 N VAL B 337 O PHE B 344 SHEET 4 F 6 LYS B 315 VAL B 320 -1 N VAL B 319 O ALA B 336 SHEET 5 F 6 LYS B 367 MET B 370 1 O LYS B 367 N ALA B 316 SHEET 6 F 6 VAL B 390 ASP B 393 1 O PHE B 392 N MET B 370 SHEET 1 G 2 VAL B 493 LYS B 494 0 SHEET 2 G 2 LYS B 601 VAL B 602 -1 O VAL B 602 N VAL B 493 SHEET 1 H 2 ILE B 605 PHE B 606 0 SHEET 2 H 2 SER B 618 THR B 619 -1 O THR B 619 N ILE B 605 SHEET 1 I 4 HIS B 823 GLN B 827 0 SHEET 2 I 4 GLU B 831 PRO B 837 -1 O ILE B 833 N LEU B 826 SHEET 3 I 4 TRP B 647 TYR B 654 -1 N PHE B 650 O LEU B 834 SHEET 4 I 4 VAL B 864 GLY B 869 -1 O ASP B 865 N ASP B 653 SHEET 1 J 2 TYR B 762 THR B 764 0 SHEET 2 J 2 ARG B 770 TYR B 772 -1 O ARG B 771 N VAL B 763 LINK MN MN A 1 O2A DCP A 201 1555 1555 2.03 LINK MN MN A 1 O2B DCP A 201 1555 1555 2.05 LINK MN MN A 1 O2G DCP A 201 1555 1555 2.00 LINK MN MN A 1 OD1 ASP A 653 1555 1555 2.07 LINK MN MN A 1 OD2 ASP A 653 1555 1555 2.76 LINK MN MN A 1 O TYR A 654 1555 1555 2.72 LINK MN MN A 1 OD2 ASP A 830 1555 1555 2.50 LINK O2A DCP A 201 MG MG A 205 1555 1555 2.66 LINK MG MG A 205 OD2 ASP A 653 1555 1555 2.93 LINK MG MG A 205 OD1 ASP A 830 1555 1555 2.66 LINK MN MN B 2 O2G DCP B 202 1555 1555 2.09 LINK MN MN B 2 O2B DCP B 202 1555 1555 2.03 LINK MN MN B 2 O2A DCP B 202 1555 1555 2.09 LINK MN MN B 2 OD2 ASP B 653 1555 1555 2.46 LINK MN MN B 2 O TYR B 654 1555 1555 1.86 LINK MN MN B 2 OD1 ASP B 830 1555 1555 2.16 CISPEP 1 GLU A 620 PRO A 621 0 0.26 CISPEP 2 GLU B 620 PRO B 621 0 -0.16 SITE 1 AC1 5 DCP A 201 MG A 205 ASP A 653 TYR A 654 SITE 2 AC1 5 ASP A 830 SITE 1 AC2 4 DCP B 202 ASP B 653 TYR B 654 ASP B 830 SITE 1 AC3 5 MN A 1 DCP A 201 ASP A 653 ASP A 830 SITE 2 AC3 5 DA C 29 SITE 1 AC4 3 HOH A 154 ARG A 472 GLU A 476 SITE 1 AC5 1 GLU B 476 SITE 1 AC6 19 MN A 1 HOH A 98 HOH A 123 MG A 205 SITE 2 AC6 19 ARG A 615 ASP A 653 TYR A 654 GLN A 656 SITE 3 AC6 19 ILE A 657 GLU A 658 HIS A 682 ARG A 702 SITE 4 AC6 19 LYS A 706 PHE A 710 TYR A 714 ASP A 830 SITE 5 AC6 19 HOH C 18 DA C 29 DG D 3 SITE 1 AC7 17 MN B 2 HOH B 96 ARG B 615 ASP B 653 SITE 2 AC7 17 TYR B 654 SER B 655 GLN B 656 ILE B 657 SITE 3 AC7 17 GLU B 658 HIS B 682 ARG B 702 LYS B 706 SITE 4 AC7 17 PHE B 710 ASP B 830 DA E 29 DG F 3 SITE 5 AC7 17 DT F 4 CRYST1 91.681 91.681 190.116 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010907 0.006297 0.000000 0.00000 SCALE2 0.000000 0.012595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005260 0.00000