HEADER HYDROLASE 26-MAY-02 1LV7 TITLE CRYSTAL STRUCTURE OF THE AAA DOMAIN OF FTSH COMPND MOL_ID: 1; COMPND 2 MOLECULE: FTSH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AAA DOMAIN; COMPND 5 SYNONYM: CELL DIVISION PROTEIN FTSH; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FTSH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS ALPHA/BETA DOMAIN, FOUR HELIX BUNDLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KRZYWDA,A.M.BRZOZOWSKI,C.VERMA,K.KARATA,T.OGURA,A.J.WILKINSON REVDAT 4 13-MAR-24 1LV7 1 REMARK SEQADV REVDAT 3 13-JUL-11 1LV7 1 VERSN REVDAT 2 24-FEB-09 1LV7 1 VERSN REVDAT 1 09-OCT-02 1LV7 0 JRNL AUTH S.KRZYWDA,A.M.BRZOZOWSKI,C.VERMA,K.KARATA,T.OGURA, JRNL AUTH 2 A.J.WILKINSON JRNL TITL THE CRYSTAL STRUCTURE OF THE AAA DOMAIN OF THE ATP-DEPENDENT JRNL TITL 2 PROTEASE FTSH OF ESCHERICHIA COLI AT 1.5 A RESOLUTION. JRNL REF STRUCTURE V. 10 1073 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12176385 JRNL DOI 10.1016/S0969-2126(02)00806-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.KRZYWDA,A.M.BRZOZOWSKI,K.KARATA,T.OGURA,A.J.WILKINSON REMARK 1 TITL CRYSTALLIZATION OF THE AAA DOMAIN OF THE ATP-DEPENDENT REMARK 1 TITL 2 PROTEASE FTSH OF ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1066 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444902006972 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.12 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 41544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1977 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1878 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2656 ; 1.812 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4371 ; 2.098 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 5.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2174 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 393 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2103 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1116 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.347 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 1.338 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1993 ; 1.913 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 738 ; 2.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 663 ; 3.820 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1977 ; 1.486 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 366 ; 5.513 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1955 ; 2.590 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9861 21.6216 55.3517 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0192 REMARK 3 T33: 0.0799 T12: 0.0118 REMARK 3 T13: -0.0174 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.4436 L22: 0.6263 REMARK 3 L33: 1.9477 L12: 0.1001 REMARK 3 L13: 0.0780 L23: 0.7367 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0711 S13: -0.0236 REMARK 3 S21: 0.0805 S22: -0.0325 S23: 0.0801 REMARK 3 S31: 0.2079 S32: -0.1410 S33: 0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1LV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS-HCL, DTT, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.53300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.57600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.57600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.26650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.57600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.57600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.79950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.57600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.57600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.26650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.57600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.57600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 141.79950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.53300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 53.15200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 53.15200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.53300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 181 REMARK 465 LYS A 182 REMARK 465 LEU A 183 REMARK 465 GLY A 184 REMARK 465 GLY A 185 REMARK 465 GLU A 400 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 165 CG CD OE1 OE2 REMARK 480 ARG A 175 CZ NH1 NH2 REMARK 480 GLU A 176 CG CD OE1 OE2 REMARK 480 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 186 CG CD CE NZ REMARK 480 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 377 CZ NH1 NH2 REMARK 480 LYS A 390 NZ REMARK 480 LYS A 392 CD CE NZ REMARK 480 MET A 397 SD CE REMARK 480 LEU A 399 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 165 O HOH A 1258 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 165 CG GLU A 165 CD 0.406 REMARK 500 ARG A 175 NE ARG A 175 CZ -0.091 REMARK 500 LYS A 186 CB LYS A 186 CG -0.260 REMARK 500 ARG A 377 NE ARG A 377 CZ 0.151 REMARK 500 LYS A 390 CE LYS A 390 NZ -0.263 REMARK 500 LYS A 392 CG LYS A 392 CD 0.278 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 CYS A 160 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 165 CB - CG - CD ANGL. DEV. = -27.5 DEGREES REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 GLU A 176 CB - CG - CD ANGL. DEV. = -28.4 DEGREES REMARK 500 LYS A 186 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 254 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 MET A 281 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 339 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 381 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 LYS A 392 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP A 393 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 176 74.96 -161.84 REMARK 500 LYS A 189 -70.73 -132.56 REMARK 500 ARG A 315 -126.61 -111.74 REMARK 500 MET A 397 -15.32 -162.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 175 0.14 SIDE CHAIN REMARK 500 ARG A 339 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 DBREF 1LV7 A 144 400 UNP P0AAI3 FTSH_ECOLI 141 397 SEQADV 1LV7 LEU A 399 UNP P0AAI3 ALA 396 CONFLICT SEQRES 1 A 257 MET LEU THR GLU ASP GLN ILE LYS THR THR PHE ALA ASP SEQRES 2 A 257 VAL ALA GLY CYS ASP GLU ALA LYS GLU GLU VAL ALA GLU SEQRES 3 A 257 LEU VAL GLU TYR LEU ARG GLU PRO SER ARG PHE GLN LYS SEQRES 4 A 257 LEU GLY GLY LYS ILE PRO LYS GLY VAL LEU MET VAL GLY SEQRES 5 A 257 PRO PRO GLY THR GLY LYS THR LEU LEU ALA LYS ALA ILE SEQRES 6 A 257 ALA GLY GLU ALA LYS VAL PRO PHE PHE THR ILE SER GLY SEQRES 7 A 257 SER ASP PHE VAL GLU MET PHE VAL GLY VAL GLY ALA SER SEQRES 8 A 257 ARG VAL ARG ASP MET PHE GLU GLN ALA LYS LYS ALA ALA SEQRES 9 A 257 PRO CYS ILE ILE PHE ILE ASP GLU ILE ASP ALA VAL GLY SEQRES 10 A 257 ARG GLN ARG GLY ALA GLY LEU GLY GLY GLY HIS ASP GLU SEQRES 11 A 257 ARG GLU GLN THR LEU ASN GLN MET LEU VAL GLU MET ASP SEQRES 12 A 257 GLY PHE GLU GLY ASN GLU GLY ILE ILE VAL ILE ALA ALA SEQRES 13 A 257 THR ASN ARG PRO ASP VAL LEU ASP PRO ALA LEU LEU ARG SEQRES 14 A 257 PRO GLY ARG PHE ASP ARG GLN VAL VAL VAL GLY LEU PRO SEQRES 15 A 257 ASP VAL ARG GLY ARG GLU GLN ILE LEU LYS VAL HIS MET SEQRES 16 A 257 ARG ARG VAL PRO LEU ALA PRO ASP ILE ASP ALA ALA ILE SEQRES 17 A 257 ILE ALA ARG GLY THR PRO GLY PHE SER GLY ALA ASP LEU SEQRES 18 A 257 ALA ASN LEU VAL ASN GLU ALA ALA LEU PHE ALA ALA ARG SEQRES 19 A 257 GLY ASN LYS ARG VAL VAL SER MET VAL GLU PHE GLU LYS SEQRES 20 A 257 ALA LYS ASP LYS ILE MET MET GLY LEU GLU HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *366(H2 O) HELIX 1 1 THR A 153 VAL A 157 5 5 HELIX 2 2 CYS A 160 VAL A 167 1 8 HELIX 3 3 VAL A 167 GLU A 176 1 10 HELIX 4 4 PRO A 177 PHE A 180 5 4 HELIX 5 5 GLY A 200 LYS A 213 1 14 HELIX 6 6 GLY A 232 LYS A 245 1 14 HELIX 7 7 GLU A 255 GLY A 260 1 6 HELIX 8 8 ASP A 272 GLY A 287 1 16 HELIX 9 9 ASP A 307 ARG A 312 5 6 HELIX 10 10 ASP A 326 ARG A 339 1 14 HELIX 11 11 ASP A 348 GLY A 355 1 8 HELIX 12 12 SER A 360 GLY A 378 1 19 HELIX 13 13 SER A 384 MET A 396 1 13 SHEET 1 A 6 LEU A 145 GLU A 147 0 SHEET 2 A 6 PHE A 216 ILE A 219 -1 O THR A 218 N THR A 146 SHEET 3 A 6 CYS A 249 ILE A 253 1 O PHE A 252 N PHE A 217 SHEET 4 A 6 ILE A 294 THR A 300 1 O ILE A 295 N ILE A 251 SHEET 5 A 6 GLY A 190 VAL A 194 1 N MET A 193 O ALA A 298 SHEET 6 A 6 ARG A 318 VAL A 321 1 O VAL A 320 N VAL A 194 CISPEP 1 ALA A 247 PRO A 248 0 -7.48 SITE 1 AC1 10 GLY A 198 THR A 199 GLY A 200 LYS A 201 SITE 2 AC1 10 PHE A 224 VAL A 225 HOH A1007 HOH A1008 SITE 3 AC1 10 HOH A1043 HOH A1107 SITE 1 AC2 4 ASN A 301 ARG A 302 HOH A1122 HOH A1325 SITE 1 AC3 3 ARG A 312 PRO A 313 HOH A1290 SITE 1 AC4 3 ARG A 261 ARG A 263 HOH A1226 SITE 1 AC5 4 GLU A 273 ARG A 340 HOH A1011 HOH A1073 CRYST1 53.152 53.152 189.066 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005289 0.00000