HEADER HYDROLASE/DNA 03-JUN-02 1LWV TITLE BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO-CRYSTALLIZED WITH TITLE 2 8-AMINOGUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 8-OXOGUANINE DNA GLYCOSYLASE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: CORE FRAGMENT (RESIDUES 12-327); COMPND 13 EC: 3.2.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: OGG1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, BOROHYDRIDE, COVALENT KEYWDS 2 TRAPPING, PRODUCT-ASSISTED CATALYSIS, REACTION INTERMEDIATE, KEYWDS 3 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.FROMME,S.D.BRUNER,W.YANG,M.KARPLUS,G.L.VERDINE REVDAT 4 06-NOV-24 1LWV 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1LWV 1 VERSN REVDAT 2 04-MAR-03 1LWV 1 JRNL REVDAT 1 25-FEB-03 1LWV 0 JRNL AUTH J.C.FROMME,S.D.BRUNER,W.YANG,M.KARPLUS,G.L.VERDINE JRNL TITL PRODUCT-ASSISTED CATALYSIS IN BASE EXCISION DNA REPAIR JRNL REF NAT.STRUCT.BIOL. V. 10 204 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12592398 JRNL DOI 10.1038/NSB902 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2273 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2485 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.210 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1EBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, CALCIUM ACETATE, REMARK 280 PEG 8000, PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.95133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.47567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.71350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.23783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 176.18917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.95133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.47567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.23783 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.71350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 176.18917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 4 REMARK 465 MET A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 ILE A 8 REMARK 465 GLY A 80 REMARK 465 ASP A 81 REMARK 465 LYS A 82 REMARK 465 SER A 326 REMARK 465 ARG A 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DC D 15 O3' DC D 15 11655 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 22 47.41 -103.22 REMARK 500 CYS A 28 105.30 -165.98 REMARK 500 GLN A 43 -63.10 -96.19 REMARK 500 ALA A 53 19.18 59.29 REMARK 500 THR A 69 -165.64 -102.36 REMARK 500 SER A 86 -164.55 -128.07 REMARK 500 LEU A 170 -96.15 -98.64 REMARK 500 ASP A 174 -127.31 57.70 REMARK 500 GLU A 218 -32.78 -159.19 REMARK 500 LYS A 261 78.91 -112.87 REMARK 500 THR A 284 -61.97 -108.21 REMARK 500 THR A 285 0.58 -69.28 REMARK 500 ARG A 324 52.72 -69.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANG A 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EBM RELATED DB: PDB REMARK 900 1EBM IS THE CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE REMARK 900 (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDE REMARK 900 RELATED ID: 1FN7 RELATED DB: PDB REMARK 900 1FN7 IS THE COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN REMARK 900 BASE-EXCISION DNA REPAIR PROTEIN REMARK 900 RELATED ID: 1HU0 RELATED DB: PDB REMARK 900 1HU0 IS THE CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED REMARK 900 INTERMEDIATE COMPLEX REMARK 900 RELATED ID: 1LWW RELATED DB: PDB REMARK 900 1LWW IS BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO- REMARK 900 CRYSTALLIZED WITH 8-BROMOGUANINE REMARK 900 RELATED ID: 1LWY RELATED DB: PDB REMARK 900 1LWY IS BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE WITHOUT 8-OXOGUANINE DBREF 1LWV A 12 327 UNP O15527 OGG1_HUMAN 12 327 DBREF 1LWV D 1 15 PDB 1LWV 1LWV 1 15 DBREF 1LWV E 16 30 PDB 1LWV 1LWV 16 30 SEQADV 1LWV ALA A 4 UNP O15527 CLONING ARTIFACT SEQADV 1LWV MET A 5 UNP O15527 CLONING ARTIFACT SEQADV 1LWV ALA A 6 UNP O15527 CLONING ARTIFACT SEQADV 1LWV ASP A 7 UNP O15527 CLONING ARTIFACT SEQADV 1LWV ILE A 8 UNP O15527 CLONING ARTIFACT SEQADV 1LWV GLY A 9 UNP O15527 CLONING ARTIFACT SEQADV 1LWV SER A 10 UNP O15527 CLONING ARTIFACT SEQADV 1LWV GLU A 11 UNP O15527 CLONING ARTIFACT SEQRES 1 D 15 DG DG DT DA DG DA DC DC DT DG DG DA DC SEQRES 2 D 15 DG DC SEQRES 1 E 15 DG DC DG DT DC DC DA PED DG DT DC DT DA SEQRES 2 E 15 DC DC SEQRES 1 A 324 ALA MET ALA ASP ILE GLY SER GLU GLY HIS ARG THR LEU SEQRES 2 A 324 ALA SER THR PRO ALA LEU TRP ALA SER ILE PRO CYS PRO SEQRES 3 A 324 ARG SER GLU LEU ARG LEU ASP LEU VAL LEU PRO SER GLY SEQRES 4 A 324 GLN SER PHE ARG TRP ARG GLU GLN SER PRO ALA HIS TRP SEQRES 5 A 324 SER GLY VAL LEU ALA ASP GLN VAL TRP THR LEU THR GLN SEQRES 6 A 324 THR GLU GLU GLN LEU HIS CYS THR VAL TYR ARG GLY ASP SEQRES 7 A 324 LYS SER GLN ALA SER ARG PRO THR PRO ASP GLU LEU GLU SEQRES 8 A 324 ALA VAL ARG LYS TYR PHE GLN LEU ASP VAL THR LEU ALA SEQRES 9 A 324 GLN LEU TYR HIS HIS TRP GLY SER VAL ASP SER HIS PHE SEQRES 10 A 324 GLN GLU VAL ALA GLN LYS PHE GLN GLY VAL ARG LEU LEU SEQRES 11 A 324 ARG GLN ASP PRO ILE GLU CYS LEU PHE SER PHE ILE CYS SEQRES 12 A 324 SER SER ASN ASN ASN ILE ALA ARG ILE THR GLY MET VAL SEQRES 13 A 324 GLU ARG LEU CYS GLN ALA PHE GLY PRO ARG LEU ILE GLN SEQRES 14 A 324 LEU ASP ASP VAL THR TYR HIS GLY PHE PRO SER LEU GLN SEQRES 15 A 324 ALA LEU ALA GLY PRO GLU VAL GLU ALA HIS LEU ARG LYS SEQRES 16 A 324 LEU GLY LEU GLY TYR ARG ALA ARG TYR VAL SER ALA SER SEQRES 17 A 324 ALA ARG ALA ILE LEU GLU GLU GLN GLY GLY LEU ALA TRP SEQRES 18 A 324 LEU GLN GLN LEU ARG GLU SER SER TYR GLU GLU ALA HIS SEQRES 19 A 324 LYS ALA LEU CYS ILE LEU PRO GLY VAL GLY THR LYS VAL SEQRES 20 A 324 ALA ASP CYS ILE CYS LEU MET ALA LEU ASP LYS PRO GLN SEQRES 21 A 324 ALA VAL PRO VAL ASP VAL HIS MET TRP HIS ILE ALA GLN SEQRES 22 A 324 ARG ASP TYR SER TRP HIS PRO THR THR SER GLN ALA LYS SEQRES 23 A 324 GLY PRO SER PRO GLN THR ASN LYS GLU LEU GLY ASN PHE SEQRES 24 A 324 PHE ARG SER LEU TRP GLY PRO TYR ALA GLY TRP ALA GLN SEQRES 25 A 324 ALA VAL LEU PHE SER ALA ASP LEU ARG GLN SER ARG HET PED E 23 11 HET CA E 153 1 HET ANG A 328 12 HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE HETNAM CA CALCIUM ION HETNAM ANG 8-AMINOGUANINE HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE FORMUL 2 PED C5 H13 O6 P FORMUL 4 CA CA 2+ FORMUL 5 ANG C5 H6 N6 O FORMUL 6 HOH *145(H2 O) HELIX 1 1 THR A 19 TRP A 23 5 5 HELIX 2 2 ARG A 34 LEU A 39 1 6 HELIX 3 3 THR A 89 PHE A 100 1 12 HELIX 4 4 THR A 105 ASP A 117 1 13 HELIX 5 5 ASP A 117 GLN A 125 1 9 HELIX 6 6 ASP A 136 CYS A 146 1 11 HELIX 7 7 ASN A 151 GLY A 167 1 17 HELIX 8 8 SER A 183 GLY A 189 1 7 HELIX 9 9 GLU A 191 LEU A 199 1 9 HELIX 10 10 TYR A 203 GLU A 218 1 16 HELIX 11 11 GLY A 221 ARG A 229 1 9 HELIX 12 12 SER A 232 CYS A 241 1 10 HELIX 13 13 GLY A 247 LEU A 259 1 13 HELIX 14 14 ASP A 268 SER A 280 1 13 HELIX 15 15 SER A 292 GLY A 308 1 17 HELIX 16 16 TYR A 310 ARG A 324 1 15 SHEET 1 A 5 ALA A 24 PRO A 27 0 SHEET 2 A 5 GLN A 72 TYR A 78 -1 O CYS A 75 N ALA A 24 SHEET 3 A 5 VAL A 63 GLN A 68 -1 N THR A 67 O HIS A 74 SHEET 4 A 5 HIS A 54 VAL A 58 -1 N TRP A 55 O LEU A 66 SHEET 5 A 5 ARG A 48 SER A 51 -1 N ARG A 48 O SER A 56 SHEET 1 B 2 ARG A 169 LEU A 173 0 SHEET 2 B 2 VAL A 176 HIS A 179 -1 O VAL A 176 N LEU A 173 LINK O3' DA E 22 P PED E 23 1555 1555 1.59 LINK O3' PED E 23 P DG E 24 1555 1555 1.61 LINK C1' PED E 23 NZ LYS A 249 1555 1555 1.45 LINK O HOH E 6 CA CA E 153 1555 1555 2.78 SITE 1 AC1 2 HOH E 6 DA E 22 SITE 1 AC2 12 GLY A 42 PHE A 45 PHE A 144 LYS A 249 SITE 2 AC2 12 MET A 257 PRO A 266 ASP A 268 MET A 271 SITE 3 AC2 12 GLN A 315 PHE A 319 HOH A 435 PED E 23 CRYST1 91.995 91.995 211.427 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010870 0.006276 0.000000 0.00000 SCALE2 0.000000 0.012552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004730 0.00000