HEADER OXIDOREDUCTASE 07-JUN-02 1LY8 TITLE THE CRYSTAL STRUCTURE OF A MUTANT ENZYME OF COPRINUS CINEREUS TITLE 2 PEROXIDASE PROVIDES AN UNDERSTANDING OF ITS INCREASED THERMOSTABILITY TITLE 3 AND INSIGHT INTO MODELLING OF PROTEIN STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA; SOURCE 3 ORGANISM_TAXID: 5346; SOURCE 4 GENE: CIP1; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS PEROXIDASE, MUTANT, THERMOSTABILITY, COPRINUS CINEREUS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HOUBORG,P.HARRIS,J.-C.N.POULSEN,A.SVENDSEN,P.SCHNEIDER,S.LARSEN REVDAT 9 09-OCT-24 1LY8 1 REMARK REVDAT 8 27-OCT-21 1LY8 1 SEQADV HETSYN REVDAT 7 29-JUL-20 1LY8 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 07-MAR-18 1LY8 1 REMARK REVDAT 5 16-NOV-11 1LY8 1 HETATM REVDAT 4 13-JUL-11 1LY8 1 VERSN REVDAT 3 24-FEB-09 1LY8 1 VERSN REVDAT 2 03-JUN-03 1LY8 1 JRNL REMARK REVDAT 1 14-JUN-02 1LY8 0 JRNL AUTH K.HOUBORG,P.HARRIS,J.C.POULSEN,P.SCHNEIDER,A.SVENDSEN, JRNL AUTH 2 S.LARSEN JRNL TITL THE STRUCTURE OF A MUTANT ENZYME OF COPRINUS CINEREUS JRNL TITL 2 PEROXIDASE PROVIDES AN UNDERSTANDING OF ITS INCREASED JRNL TITL 3 THERMOSTABILITY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 997 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777761 JRNL DOI 10.1107/S0907444903006784 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 33983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5556 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 309 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 234 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.34000 REMARK 3 B22 (A**2) : 6.26000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.880 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 54.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : HEM_DANDGLYCEROL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : HEMANDGLYCEROL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08535 REMARK 200 MONOCHROMATOR : SINGLE ASYMMETIRCALLY CUT REMARK 200 SI(III) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18600 REMARK 200 R SYM FOR SHELL (I) : 0.18600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 0.1M 2-(N- REMARK 280 MORPHOLINO)ETHANESULFONIC ACID, PH 6.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP AT 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.24500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.24500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A9217 LIES ON A SPECIAL POSITION. REMARK 375 HOH A9300 LIES ON A SPECIAL POSITION. REMARK 375 HOH A9301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 GLN B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -71.83 -94.69 REMARK 500 GLN A 38 50.81 38.02 REMARK 500 CYS A 42 73.36 -110.61 REMARK 500 GLU A 43 -156.15 -124.27 REMARK 500 ALA A 75 49.74 -69.77 REMARK 500 SER A 333 -137.79 -93.51 REMARK 500 PRO A 335 -165.96 -71.67 REMARK 500 ASN B 35 -68.42 -94.68 REMARK 500 CYS B 42 72.50 -113.85 REMARK 500 GLU B 43 -153.28 -123.68 REMARK 500 LEU B 180 1.52 -67.16 REMARK 500 SER B 333 -136.99 -104.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 335 -13.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A9001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 O 83.2 REMARK 620 3 GLY A 74 O 94.7 72.4 REMARK 620 4 ASP A 76 OD2 85.5 138.6 69.1 REMARK 620 5 SER A 78 OG 89.5 149.1 138.4 70.0 REMARK 620 6 HOH A9029 O 174.4 98.8 90.9 96.3 86.2 REMARK 620 7 HOH A9218 O 88.5 71.7 143.3 147.5 78.1 87.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 344 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HEM A 344 NA 95.8 REMARK 620 3 HEM A 344 NB 95.3 92.0 REMARK 620 4 HEM A 344 NC 94.8 168.7 90.8 REMARK 620 5 HEM A 344 ND 90.9 86.9 173.8 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A9004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 184 O REMARK 620 2 SER A 184 OG 73.2 REMARK 620 3 ASP A 201 OD1 79.1 119.3 REMARK 620 4 ASP A 201 OD2 86.8 79.2 45.9 REMARK 620 5 THR A 203 O 78.0 147.2 69.0 114.9 REMARK 620 6 THR A 203 OG1 146.0 140.6 78.5 95.5 70.3 REMARK 620 7 VAL A 206 O 89.4 82.7 149.9 161.9 81.5 97.5 REMARK 620 8 ASP A 208 OD1 141.3 69.6 128.8 96.0 132.9 72.2 76.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B9002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 O REMARK 620 2 ASP B 56 OD1 81.9 REMARK 620 3 GLY B 74 O 67.2 94.6 REMARK 620 4 ASP B 76 OD2 136.9 85.3 73.1 REMARK 620 5 SER B 78 OG 149.3 93.0 143.5 72.1 REMARK 620 6 HOH B9017 O 98.5 175.5 89.6 97.3 84.4 REMARK 620 7 HOH B9196 O 69.8 94.0 134.4 152.4 80.4 82.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 344 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 NE2 REMARK 620 2 HEM B 344 NA 93.8 REMARK 620 3 HEM B 344 NB 92.1 92.7 REMARK 620 4 HEM B 344 NC 97.1 169.1 86.0 REMARK 620 5 HEM B 344 ND 91.1 89.2 176.2 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B9003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 184 O REMARK 620 2 SER B 184 OG 76.4 REMARK 620 3 ASP B 201 OD2 87.2 79.3 REMARK 620 4 ASP B 201 OD1 76.7 117.1 43.7 REMARK 620 5 THR B 203 O 78.5 152.2 111.4 67.7 REMARK 620 6 THR B 203 OG1 145.4 137.2 91.5 78.7 69.9 REMARK 620 7 VAL B 206 O 92.0 85.7 164.7 150.4 83.4 97.6 REMARK 620 8 ASP B 208 OD1 144.8 69.6 95.3 127.4 131.6 69.8 76.6 REMARK 620 N 1 2 3 4 5 6 7 DBREF 1LY8 A 1 343 UNP P28314 PER_COPCI 21 363 DBREF 1LY8 B 1 343 UNP P28314 PER_COPCI 21 363 SEQADV 1LY8 SER A 49 UNP P28314 ILE 69 ENGINEERED MUTATION SEQADV 1LY8 ALA A 53 UNP P28314 VAL 73 ENGINEERED MUTATION SEQADV 1LY8 ALA A 121 UNP P28314 THR 141 ENGINEERED MUTATION SEQADV 1LY8 PHE A 166 UNP P28314 MET 186 ENGINEERED MUTATION SEQADV 1LY8 GLY A 239 UNP P28314 GLU 259 ENGINEERED MUTATION SEQADV 1LY8 ILE A 242 UNP P28314 MET 262 ENGINEERED MUTATION SEQADV 1LY8 PHE A 272 UNP P28314 TYR 292 ENGINEERED MUTATION SEQADV 1LY8 SER B 49 UNP P28314 ILE 69 ENGINEERED MUTATION SEQADV 1LY8 ALA B 53 UNP P28314 VAL 73 ENGINEERED MUTATION SEQADV 1LY8 ALA B 121 UNP P28314 THR 141 ENGINEERED MUTATION SEQADV 1LY8 PHE B 166 UNP P28314 MET 186 ENGINEERED MUTATION SEQADV 1LY8 GLY B 239 UNP P28314 GLU 259 ENGINEERED MUTATION SEQADV 1LY8 ILE B 242 UNP P28314 MET 262 ENGINEERED MUTATION SEQADV 1LY8 PHE B 272 UNP P28314 TYR 292 ENGINEERED MUTATION SEQRES 1 A 343 GLN GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY SEQRES 2 A 343 GLY GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE SEQRES 3 A 343 ASP VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SEQRES 4 A 343 SER LYS CYS GLU SER PRO VAL ARG LYS SER LEU ARG ILE SEQRES 5 A 343 ALA PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR SEQRES 6 A 343 ALA ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER SEQRES 7 A 343 ILE ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA SEQRES 8 A 343 ASN GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA SEQRES 9 A 343 VAL GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE SEQRES 10 A 343 GLN PHE ALA ALA ALA VAL GLY MET SER ASN CYS PRO GLY SEQRES 11 A 343 SER PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SEQRES 12 A 343 SER GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY SEQRES 13 A 343 ASN THR VAL THR ALA ILE LEU ASP ARG PHE GLY ASP ALA SEQRES 14 A 343 GLY PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA SEQRES 15 A 343 HIS SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE SEQRES 16 A 343 PHE ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP SEQRES 17 A 343 THR GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR SEQRES 18 A 343 GLN PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER SEQRES 19 A 343 PRO PHE PRO GLY GLY PHE ARG ILE ARG SER ASP ALA LEU SEQRES 20 A 343 LEU ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER SEQRES 21 A 343 MET THR SER SER ASN GLU VAL MET GLY GLN ARG PHE ARG SEQRES 22 A 343 ALA ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG SEQRES 23 A 343 ASN ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA SEQRES 24 A 343 VAL SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU SEQRES 25 A 343 THR VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO SEQRES 26 A 343 PHE PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER SEQRES 27 A 343 LEU ALA PRO ALA PRO SEQRES 1 B 343 GLN GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY SEQRES 2 B 343 GLY GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE SEQRES 3 B 343 ASP VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SEQRES 4 B 343 SER LYS CYS GLU SER PRO VAL ARG LYS SER LEU ARG ILE SEQRES 5 B 343 ALA PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR SEQRES 6 B 343 ALA ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER SEQRES 7 B 343 ILE ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA SEQRES 8 B 343 ASN GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA SEQRES 9 B 343 VAL GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE SEQRES 10 B 343 GLN PHE ALA ALA ALA VAL GLY MET SER ASN CYS PRO GLY SEQRES 11 B 343 SER PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SEQRES 12 B 343 SER GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY SEQRES 13 B 343 ASN THR VAL THR ALA ILE LEU ASP ARG PHE GLY ASP ALA SEQRES 14 B 343 GLY PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA SEQRES 15 B 343 HIS SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE SEQRES 16 B 343 PHE ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP SEQRES 17 B 343 THR GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR SEQRES 18 B 343 GLN PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER SEQRES 19 B 343 PRO PHE PRO GLY GLY PHE ARG ILE ARG SER ASP ALA LEU SEQRES 20 B 343 LEU ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER SEQRES 21 B 343 MET THR SER SER ASN GLU VAL MET GLY GLN ARG PHE ARG SEQRES 22 B 343 ALA ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG SEQRES 23 B 343 ASN ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA SEQRES 24 B 343 VAL SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU SEQRES 25 B 343 THR VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO SEQRES 26 B 343 PHE PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER SEQRES 27 B 343 LEU ALA PRO ALA PRO MODRES 1LY8 ASN A 142 ASN GLYCOSYLATION SITE MODRES 1LY8 THR A 331 THR GLYCOSYLATION SITE MODRES 1LY8 SER A 338 SER GLYCOSYLATION SITE MODRES 1LY8 ASN B 142 ASN GLYCOSYLATION SITE MODRES 1LY8 THR B 331 THR GLYCOSYLATION SITE MODRES 1LY8 SER B 338 SER GLYCOSYLATION SITE HET NAG A 500 14 HET BMA A 600 11 HET MAN A 700 11 HET CA A9001 1 HET CA A9004 1 HET HEM A 344 43 HET GOL A 801 6 HET GOL A 806 6 HET GOL A 810 6 HET GOL A 811 6 HET NAG B 500 14 HET BMA B 600 11 HET MAN B 700 11 HET CA B9002 1 HET CA B9003 1 HET HEM B 344 43 HET GOL B 800 6 HET GOL B 802 6 HET GOL B 803 6 HET GOL B 804 6 HET GOL B 805 6 HET GOL B 807 6 HET GOL B 808 6 HET GOL B 809 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 5 MAN 2(C6 H12 O6) FORMUL 6 CA 4(CA 2+) FORMUL 8 HEM 2(C34 H32 FE N4 O4) FORMUL 9 GOL 12(C3 H8 O3) FORMUL 27 HOH *637(H2 O) HELIX 1 1 ASN A 19 CYS A 22 5 4 HELIX 2 2 CYS A 23 ASN A 35 1 13 HELIX 3 3 GLU A 43 ILE A 58 1 16 HELIX 4 4 SER A 61 ALA A 67 1 7 HELIX 5 5 GLY A 77 HIS A 82 1 6 HELIX 6 6 HIS A 82 LEU A 87 1 6 HELIX 7 7 ALA A 88 GLY A 93 5 6 HELIX 8 8 LEU A 95 GLY A 110 1 16 HELIX 9 9 SER A 112 SER A 126 1 15 HELIX 10 10 THR A 158 GLY A 170 1 13 HELIX 11 11 SER A 172 LEU A 180 1 9 HELIX 12 12 ALA A 181 LEU A 185 5 5 HELIX 13 13 ASN A 192 PHE A 196 5 5 HELIX 14 14 THR A 209 LEU A 216 1 8 HELIX 15 15 ARG A 243 ASP A 251 1 9 HELIX 16 16 THR A 254 MET A 261 1 8 HELIX 17 17 SER A 264 SER A 280 1 17 HELIX 18 18 ASP A 285 LEU A 289 5 5 HELIX 19 19 SER A 293 ILE A 296 5 4 HELIX 20 20 THR A 313 ILE A 317 5 5 HELIX 21 21 ASN B 19 CYS B 22 5 4 HELIX 22 22 CYS B 23 ASN B 35 1 13 HELIX 23 23 GLU B 43 ILE B 58 1 16 HELIX 24 24 SER B 61 ALA B 67 1 7 HELIX 25 25 GLY B 77 HIS B 82 1 6 HELIX 26 26 HIS B 82 LEU B 87 1 6 HELIX 27 27 ALA B 88 GLY B 93 5 6 HELIX 28 28 LEU B 95 GLY B 110 1 16 HELIX 29 29 SER B 112 SER B 126 1 15 HELIX 30 30 THR B 158 GLY B 170 1 13 HELIX 31 31 SER B 172 LEU B 180 1 9 HELIX 32 32 ALA B 181 LEU B 185 5 5 HELIX 33 33 ASN B 192 PHE B 196 5 5 HELIX 34 34 THR B 209 LEU B 216 1 8 HELIX 35 35 ARG B 243 ASP B 251 1 9 HELIX 36 36 THR B 254 MET B 261 1 8 HELIX 37 37 SER B 264 SER B 280 1 17 HELIX 38 38 ASP B 285 LEU B 289 5 5 HELIX 39 39 SER B 293 ILE B 296 5 4 HELIX 40 40 THR B 313 ILE B 317 5 5 SHEET 1 A 2 VAL A 9 THR A 10 0 SHEET 2 A 2 SER A 16 THR A 17 -1 O THR A 17 N VAL A 9 SHEET 1 B 2 LEU A 137 THR A 138 0 SHEET 2 B 2 THR A 290 ASP A 291 -1 O THR A 290 N THR A 138 SHEET 1 C 2 SER A 187 GLN A 188 0 SHEET 2 C 2 SER A 198 PRO A 199 -1 O SER A 198 N GLN A 188 SHEET 1 D 2 GLU A 231 GLU A 232 0 SHEET 2 D 2 ARG A 241 ILE A 242 -1 O ARG A 241 N GLU A 232 SHEET 1 E 2 VAL A 307 ILE A 308 0 SHEET 2 E 2 ALA A 330 THR A 331 1 O ALA A 330 N ILE A 308 SHEET 1 F 2 VAL B 9 THR B 10 0 SHEET 2 F 2 SER B 16 THR B 17 -1 O THR B 17 N VAL B 9 SHEET 1 G 2 LEU B 137 THR B 138 0 SHEET 2 G 2 THR B 290 ASP B 291 -1 O THR B 290 N THR B 138 SHEET 1 H 2 SER B 187 GLN B 188 0 SHEET 2 H 2 SER B 198 PRO B 199 -1 O SER B 198 N GLN B 188 SHEET 1 I 2 GLU B 231 GLU B 232 0 SHEET 2 I 2 ARG B 241 ILE B 242 -1 O ARG B 241 N GLU B 232 SHEET 1 J 2 VAL B 307 ILE B 308 0 SHEET 2 J 2 ALA B 330 THR B 331 1 O ALA B 330 N ILE B 308 SSBOND 1 CYS A 11 CYS A 23 1555 1555 2.04 SSBOND 2 CYS A 22 CYS A 292 1555 1555 2.03 SSBOND 3 CYS A 42 CYS A 128 1555 1555 2.03 SSBOND 4 CYS A 256 CYS A 321 1555 1555 2.04 SSBOND 5 CYS B 11 CYS B 23 1555 1555 2.04 SSBOND 6 CYS B 22 CYS B 292 1555 1555 2.04 SSBOND 7 CYS B 42 CYS B 128 1555 1555 2.03 SSBOND 8 CYS B 256 CYS B 321 1555 1555 2.04 LINK ND2 ASN A 142 C1 NAG A 500 1555 1555 1.45 LINK OG1 THR A 331 C1 BMA A 600 1555 1555 1.38 LINK OG SER A 338 C1 MAN A 700 1555 1555 1.39 LINK ND2 ASN B 142 C1 NAG B 500 1555 1555 1.45 LINK OG1 THR B 331 C1 BMA B 600 1555 1555 1.39 LINK OG SER B 338 C1 MAN B 700 1555 1555 1.39 LINK OD1 ASP A 56 CA CA A9001 1555 1555 2.37 LINK O ASP A 56 CA CA A9001 1555 1555 2.40 LINK O GLY A 74 CA CA A9001 1555 1555 2.47 LINK OD2 ASP A 76 CA CA A9001 1555 1555 2.65 LINK OG SER A 78 CA CA A9001 1555 1555 2.35 LINK NE2 HIS A 183 FE HEM A 344 1555 1555 2.18 LINK O SER A 184 CA CA A9004 1555 1555 2.34 LINK OG SER A 184 CA CA A9004 1555 1555 2.50 LINK OD1 ASP A 201 CA CA A9004 1555 1555 3.03 LINK OD2 ASP A 201 CA CA A9004 1555 1555 2.27 LINK O THR A 203 CA CA A9004 1555 1555 2.41 LINK OG1 THR A 203 CA CA A9004 1555 1555 2.52 LINK O VAL A 206 CA CA A9004 1555 1555 2.39 LINK OD1 ASP A 208 CA CA A9004 1555 1555 2.42 LINK CA CA A9001 O HOH A9029 1555 1555 2.43 LINK CA CA A9001 O HOH A9218 1555 1555 2.48 LINK O ASP B 56 CA CA B9002 1555 1555 2.40 LINK OD1 ASP B 56 CA CA B9002 1555 1555 2.34 LINK O GLY B 74 CA CA B9002 1555 1555 2.43 LINK OD2 ASP B 76 CA CA B9002 1555 1555 2.59 LINK OG SER B 78 CA CA B9002 1555 1555 2.34 LINK NE2 HIS B 183 FE HEM B 344 1555 1555 2.25 LINK O SER B 184 CA CA B9003 1555 1555 2.31 LINK OG SER B 184 CA CA B9003 1555 1555 2.44 LINK OD2 ASP B 201 CA CA B9003 1555 1555 2.24 LINK OD1 ASP B 201 CA CA B9003 1555 1555 3.16 LINK O THR B 203 CA CA B9003 1555 1555 2.34 LINK OG1 THR B 203 CA CA B9003 1555 1555 2.46 LINK O VAL B 206 CA CA B9003 1555 1555 2.37 LINK OD1 ASP B 208 CA CA B9003 1555 1555 2.45 LINK CA CA B9002 O HOH B9017 1555 1555 2.35 LINK CA CA B9002 O HOH B9196 1555 1555 2.55 CRYST1 74.490 114.860 73.610 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013585 0.00000