HEADER OXIDOREDUCTASE 07-JUN-02 1LYK TITLE THE IMPACT OF THE PHYSICAL AND CHEMICAL ENVIROMENT ON THE MOLECULAR TITLE 2 STRUCTURE OF COPRINUS CINEREUS PEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA; SOURCE 3 ORGANISM_TAXID: 5346; SOURCE 4 GENE: CIP1; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS PEROXIDASE, MUTANT, THERMOSTABILITY, COPRINUS CINEREUS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HOUBORG,P.HARRIS,J.F.W.PETERSEN,P.ROWLAND,J.-C.N.POULSEN, AUTHOR 2 P.SCHNEIDER,J.VIND,S.LARSEN REVDAT 8 20-NOV-24 1LYK 1 HETSYN REVDAT 7 29-JUL-20 1LYK 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 11-OCT-17 1LYK 1 REMARK REVDAT 5 16-NOV-11 1LYK 1 HETATM REVDAT 4 13-JUL-11 1LYK 1 VERSN REVDAT 3 24-FEB-09 1LYK 1 VERSN REVDAT 2 03-JUN-03 1LYK 1 JRNL REMARK REVDAT 1 14-JUN-02 1LYK 0 JRNL AUTH K.HOUBORG,P.HARRIS,J.PETERSEN,P.ROWLAND,J.C.POULSEN, JRNL AUTH 2 P.SCHNEIDER,J.VIND,S.LARSEN JRNL TITL IMPACT OF THE PHYSICAL AND CHEMICAL ENVIRONMENT ON THE JRNL TITL 2 MOLECULAR STRUCTURE OF COPRINUS CINEREUS PEROXIDASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 989 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777760 JRNL DOI 10.1107/S0907444903006772 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2114 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.560 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-94 REMARK 200 TEMPERATURE (KELVIN) : 288 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG, 0.35M MGCL2, 10 MM KCN, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP AT 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B9349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 338 O5 MAN B 600 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -69.02 -95.34 REMARK 500 CYS A 42 71.04 -111.61 REMARK 500 GLU A 43 -159.92 -122.21 REMARK 500 ALA A 75 46.01 -75.25 REMARK 500 ASN B 35 -69.61 -98.44 REMARK 500 CYS B 42 79.34 -110.18 REMARK 500 GLU B 43 -158.02 -132.66 REMARK 500 PHE B 60 119.93 -160.10 REMARK 500 ALA B 75 42.79 -74.51 REMARK 500 ASN B 192 86.02 -154.80 REMARK 500 ILE B 195 55.90 -115.56 REMARK 500 PRO B 322 -72.91 -42.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A8345 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 O 74.3 REMARK 620 3 GLY A 74 O 96.1 71.1 REMARK 620 4 ASP A 76 OD2 89.7 137.1 71.4 REMARK 620 5 SER A 78 OG 90.7 146.5 141.5 70.8 REMARK 620 6 HOH A1009 O 172.1 101.2 88.4 97.8 89.7 REMARK 620 7 HOH A1027 O 91.9 77.1 143.5 144.3 73.6 80.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 344 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HEM A 344 NA 97.1 REMARK 620 3 HEM A 344 NB 93.1 93.8 REMARK 620 4 HEM A 344 NC 79.8 174.9 90.4 REMARK 620 5 HEM A 344 ND 88.7 88.2 177.1 87.7 REMARK 620 6 HOH A1011 O 176.7 84.9 89.4 98.1 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A8346 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 184 OG REMARK 620 2 SER A 184 O 73.9 REMARK 620 3 ASP A 201 OD1 115.2 79.4 REMARK 620 4 ASP A 201 OD2 76.6 92.8 46.9 REMARK 620 5 THR A 203 O 150.1 79.0 71.0 117.7 REMARK 620 6 THR A 203 OG1 139.8 146.2 81.8 94.5 68.4 REMARK 620 7 VAL A 206 O 83.4 88.4 153.2 158.8 83.3 96.2 REMARK 620 8 ASP A 208 OD1 69.4 141.2 127.8 90.6 132.0 71.7 75.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A9347 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3118 O REMARK 620 2 HOH B3339 O 118.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B9345 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD1 REMARK 620 2 ASP B 56 O 83.2 REMARK 620 3 GLY B 74 O 92.9 69.5 REMARK 620 4 ASP B 76 OD2 86.0 138.7 71.4 REMARK 620 5 SER B 78 OG 92.3 154.3 136.1 65.6 REMARK 620 6 HOH B2009 O 174.9 96.8 91.9 97.3 85.4 REMARK 620 7 HOH B2027 O 93.4 75.9 143.8 144.7 79.1 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 344 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 NE2 REMARK 620 2 HEM B 344 NA 94.6 REMARK 620 3 HEM B 344 NB 95.5 91.1 REMARK 620 4 HEM B 344 NC 91.6 172.5 92.5 REMARK 620 5 HEM B 344 ND 81.8 88.7 177.2 87.9 REMARK 620 6 HOH B2011 O 177.8 84.9 86.6 88.8 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B9346 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 184 OG REMARK 620 2 SER B 184 O 73.0 REMARK 620 3 ASP B 201 OD1 117.0 78.7 REMARK 620 4 ASP B 201 OD2 80.9 97.1 48.3 REMARK 620 5 THR B 203 O 147.6 79.5 72.6 119.7 REMARK 620 6 THR B 203 OG1 139.2 147.6 80.5 87.2 70.7 REMARK 620 7 VAL B 206 O 83.2 89.4 151.4 160.2 79.8 97.4 REMARK 620 8 ASP B 208 OD1 71.5 143.2 126.8 86.7 129.8 69.0 77.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B9349 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B3127 O REMARK 620 2 HOH B3127 O 165.2 REMARK 620 3 HOH B3346 O 79.0 89.5 REMARK 620 4 HOH B3346 O 89.5 79.0 78.6 REMARK 620 5 HOH B3347 O 92.6 98.5 99.1 176.5 REMARK 620 6 HOH B3347 O 98.4 92.6 176.5 99.0 83.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LY8 RELATED DB: PDB REMARK 900 RELATED ID: 1LY9 RELATED DB: PDB REMARK 900 RELATED ID: 1LYC RELATED DB: PDB DBREF 1LYK A 1 343 UNP P28314 PER_COPCI 21 363 DBREF 1LYK B 1 343 UNP P28314 PER_COPCI 21 363 SEQRES 1 A 343 GLN GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY SEQRES 2 A 343 GLY GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE SEQRES 3 A 343 ASP VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SEQRES 4 A 343 SER LYS CYS GLU SER PRO VAL ARG LYS ILE LEU ARG ILE SEQRES 5 A 343 VAL PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR SEQRES 6 A 343 ALA ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER SEQRES 7 A 343 ILE ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA SEQRES 8 A 343 ASN GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA SEQRES 9 A 343 VAL GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE SEQRES 10 A 343 GLN PHE ALA THR ALA VAL GLY MET SER ASN CYS PRO GLY SEQRES 11 A 343 SER PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SEQRES 12 A 343 SER GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY SEQRES 13 A 343 ASN THR VAL THR ALA ILE LEU ASP ARG MET GLY ASP ALA SEQRES 14 A 343 GLY PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA SEQRES 15 A 343 HIS SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE SEQRES 16 A 343 PHE ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP SEQRES 17 A 343 THR GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR SEQRES 18 A 343 GLN PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER SEQRES 19 A 343 PRO PHE PRO GLY GLU PHE ARG MET ARG SER ASP ALA LEU SEQRES 20 A 343 LEU ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER SEQRES 21 A 343 MET THR SER SER ASN GLU VAL MET GLY GLN ARG TYR ARG SEQRES 22 A 343 ALA ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG SEQRES 23 A 343 ASN ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA SEQRES 24 A 343 VAL SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU SEQRES 25 A 343 THR VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO SEQRES 26 A 343 PHE PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER SEQRES 27 A 343 LEU ALA PRO ALA PRO SEQRES 1 B 343 GLN GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY SEQRES 2 B 343 GLY GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE SEQRES 3 B 343 ASP VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SEQRES 4 B 343 SER LYS CYS GLU SER PRO VAL ARG LYS ILE LEU ARG ILE SEQRES 5 B 343 VAL PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR SEQRES 6 B 343 ALA ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER SEQRES 7 B 343 ILE ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA SEQRES 8 B 343 ASN GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA SEQRES 9 B 343 VAL GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE SEQRES 10 B 343 GLN PHE ALA THR ALA VAL GLY MET SER ASN CYS PRO GLY SEQRES 11 B 343 SER PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SEQRES 12 B 343 SER GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY SEQRES 13 B 343 ASN THR VAL THR ALA ILE LEU ASP ARG MET GLY ASP ALA SEQRES 14 B 343 GLY PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA SEQRES 15 B 343 HIS SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE SEQRES 16 B 343 PHE ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP SEQRES 17 B 343 THR GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR SEQRES 18 B 343 GLN PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER SEQRES 19 B 343 PRO PHE PRO GLY GLU PHE ARG MET ARG SER ASP ALA LEU SEQRES 20 B 343 LEU ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER SEQRES 21 B 343 MET THR SER SER ASN GLU VAL MET GLY GLN ARG TYR ARG SEQRES 22 B 343 ALA ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG SEQRES 23 B 343 ASN ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA SEQRES 24 B 343 VAL SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU SEQRES 25 B 343 THR VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO SEQRES 26 B 343 PHE PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER SEQRES 27 B 343 LEU ALA PRO ALA PRO MODRES 1LYK ASN A 142 ASN GLYCOSYLATION SITE MODRES 1LYK SER A 338 SER GLYCOSYLATION SITE MODRES 1LYK ASN B 142 ASN GLYCOSYLATION SITE MODRES 1LYK SER B 338 SER GLYCOSYLATION SITE HET NAG A 500 14 HET BMA A 600 11 HET CA A8345 1 HET CA A8346 1 HET MG A9347 1 HET HEM A 344 43 HET NAG B 500 14 HET MAN B 600 11 HET CA B9345 1 HET CA B9346 1 HET MG B9349 1 HET HEM B 344 43 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 CA 4(CA 2+) FORMUL 7 MG 2(MG 2+) FORMUL 8 HEM 2(C34 H32 FE N4 O4) FORMUL 10 MAN C6 H12 O6 FORMUL 15 HOH *475(H2 O) HELIX 1 1 ASN A 19 GLN A 21 5 3 HELIX 2 2 CYS A 22 ASN A 35 1 14 HELIX 3 3 GLU A 43 ILE A 58 1 16 HELIX 4 4 SER A 61 ALA A 67 1 7 HELIX 5 5 GLY A 77 HIS A 82 1 6 HELIX 6 6 HIS A 82 LEU A 87 1 6 HELIX 7 7 ALA A 88 GLY A 93 5 6 HELIX 8 8 LEU A 95 GLY A 110 1 16 HELIX 9 9 SER A 112 ASN A 127 1 16 HELIX 10 10 THR A 158 GLY A 170 1 13 HELIX 11 11 SER A 172 LEU A 180 1 9 HELIX 12 12 ALA A 181 LEU A 185 5 5 HELIX 13 13 ASN A 192 PHE A 196 5 5 HELIX 14 14 THR A 209 LEU A 217 1 9 HELIX 15 15 ARG A 243 ASP A 251 1 9 HELIX 16 16 THR A 254 MET A 261 1 8 HELIX 17 17 SER A 264 SER A 280 1 17 HELIX 18 18 ASP A 285 LEU A 289 5 5 HELIX 19 19 SER A 293 ILE A 296 5 4 HELIX 20 20 THR A 313 ILE A 317 5 5 HELIX 21 21 CYS B 22 ASN B 35 1 14 HELIX 22 22 GLU B 43 ILE B 58 1 16 HELIX 23 23 SER B 61 ALA B 67 1 7 HELIX 24 24 GLY B 77 HIS B 82 1 6 HELIX 25 25 HIS B 82 LEU B 87 1 6 HELIX 26 26 ALA B 88 GLY B 93 5 6 HELIX 27 27 LEU B 95 GLY B 110 1 16 HELIX 28 28 SER B 112 ASN B 127 1 16 HELIX 29 29 THR B 158 GLY B 170 1 13 HELIX 30 30 SER B 172 LEU B 180 1 9 HELIX 31 31 ALA B 181 LEU B 185 5 5 HELIX 32 32 ASN B 192 PHE B 196 5 5 HELIX 33 33 THR B 209 LEU B 217 1 9 HELIX 34 34 ARG B 243 ASP B 251 1 9 HELIX 35 35 THR B 254 MET B 261 1 8 HELIX 36 36 SER B 264 VAL B 281 1 18 HELIX 37 37 ASP B 285 LEU B 289 5 5 HELIX 38 38 SER B 293 ILE B 296 5 4 HELIX 39 39 THR B 313 ILE B 317 5 5 SHEET 1 A 2 VAL A 9 THR A 10 0 SHEET 2 A 2 SER A 16 THR A 17 -1 O THR A 17 N VAL A 9 SHEET 1 B 2 LEU A 137 THR A 138 0 SHEET 2 B 2 THR A 290 ASP A 291 -1 O THR A 290 N THR A 138 SHEET 1 C 2 SER A 187 GLN A 188 0 SHEET 2 C 2 SER A 198 PRO A 199 -1 O SER A 198 N GLN A 188 SHEET 1 D 2 GLU A 231 GLU A 232 0 SHEET 2 D 2 ARG A 241 MET A 242 -1 O ARG A 241 N GLU A 232 SHEET 1 E 2 VAL A 307 ILE A 308 0 SHEET 2 E 2 ALA A 330 THR A 331 1 O ALA A 330 N ILE A 308 SHEET 1 F 2 VAL B 9 THR B 10 0 SHEET 2 F 2 SER B 16 THR B 17 -1 O THR B 17 N VAL B 9 SHEET 1 G 2 LEU B 137 THR B 138 0 SHEET 2 G 2 THR B 290 ASP B 291 -1 O THR B 290 N THR B 138 SHEET 1 H 2 SER B 187 GLN B 188 0 SHEET 2 H 2 SER B 198 PRO B 199 -1 O SER B 198 N GLN B 188 SHEET 1 I 2 GLU B 231 GLU B 232 0 SHEET 2 I 2 ARG B 241 MET B 242 -1 O ARG B 241 N GLU B 232 SHEET 1 J 2 VAL B 307 ILE B 308 0 SHEET 2 J 2 ALA B 330 THR B 331 1 O ALA B 330 N ILE B 308 SSBOND 1 CYS A 11 CYS A 23 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 292 1555 1555 2.04 SSBOND 3 CYS A 42 CYS A 128 1555 1555 2.02 SSBOND 4 CYS A 256 CYS A 321 1555 1555 2.05 SSBOND 5 CYS B 11 CYS B 23 1555 1555 2.03 SSBOND 6 CYS B 22 CYS B 292 1555 1555 2.04 SSBOND 7 CYS B 42 CYS B 128 1555 1555 2.03 SSBOND 8 CYS B 256 CYS B 321 1555 1555 2.04 LINK ND2 ASN A 142 C1 NAG A 500 1555 1555 1.47 LINK OG SER A 338 C1 BMA A 600 1555 1555 1.43 LINK ND2 ASN B 142 C1 NAG B 500 1555 1555 1.45 LINK OG SER B 338 C1 MAN B 600 1555 1555 1.49 LINK OD1 ASP A 56 CA CA A8345 1555 1555 2.52 LINK O ASP A 56 CA CA A8345 1555 1555 2.37 LINK O GLY A 74 CA CA A8345 1555 1555 2.34 LINK OD2 ASP A 76 CA CA A8345 1555 1555 2.54 LINK OG SER A 78 CA CA A8345 1555 1555 2.35 LINK NE2 HIS A 183 FE HEM A 344 1555 1555 2.32 LINK OG SER A 184 CA CA A8346 1555 1555 2.36 LINK O SER A 184 CA CA A8346 1555 1555 2.22 LINK OD1 ASP A 201 CA CA A8346 1555 1555 2.90 LINK OD2 ASP A 201 CA CA A8346 1555 1555 2.40 LINK O THR A 203 CA CA A8346 1555 1555 2.29 LINK OG1 THR A 203 CA CA A8346 1555 1555 2.51 LINK O VAL A 206 CA CA A8346 1555 1555 2.33 LINK OD1 ASP A 208 CA CA A8346 1555 1555 2.48 LINK FE HEM A 344 O HOH A1011 1555 1555 2.77 LINK O HOH A1009 CA CA A8345 1555 1555 2.28 LINK O HOH A1027 CA CA A8345 1555 1555 2.41 LINK O HOH A3118 MG MG A9347 1555 1555 3.01 LINK MG MG A9347 O HOH B3339 1555 2655 2.03 LINK OD1 ASP B 56 CA CA B9345 1555 1555 2.55 LINK O ASP B 56 CA CA B9345 1555 1555 2.34 LINK O GLY B 74 CA CA B9345 1555 1555 2.38 LINK OD2 ASP B 76 CA CA B9345 1555 1555 2.66 LINK OG SER B 78 CA CA B9345 1555 1555 2.61 LINK NE2 HIS B 183 FE HEM B 344 1555 1555 2.22 LINK OG SER B 184 CA CA B9346 1555 1555 2.36 LINK O SER B 184 CA CA B9346 1555 1555 2.25 LINK OD1 ASP B 201 CA CA B9346 1555 1555 2.82 LINK OD2 ASP B 201 CA CA B9346 1555 1555 2.42 LINK O THR B 203 CA CA B9346 1555 1555 2.29 LINK OG1 THR B 203 CA CA B9346 1555 1555 2.43 LINK O VAL B 206 CA CA B9346 1555 1555 2.36 LINK OD1 ASP B 208 CA CA B9346 1555 1555 2.44 LINK FE HEM B 344 O HOH B2011 1555 1555 2.66 LINK O HOH B2009 CA CA B9345 1555 1555 2.26 LINK O HOH B2027 CA CA B9345 1555 1555 2.20 LINK O HOH B3127 MG MG B9349 1555 1555 2.06 LINK O HOH B3127 MG MG B9349 2656 1555 2.06 LINK O HOH B3346 MG MG B9349 1555 1555 2.04 LINK O HOH B3346 MG MG B9349 2656 1555 2.04 LINK O HOH B3347 MG MG B9349 1555 1555 1.99 LINK O HOH B3347 MG MG B9349 2656 1555 1.99 CISPEP 1 GLY A 334 PRO A 335 0 -0.42 CISPEP 2 GLY B 334 PRO B 335 0 -0.29 CRYST1 77.700 128.410 75.480 90.00 93.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012870 0.000000 0.000724 0.00000 SCALE2 0.000000 0.007788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013269 0.00000