HEADER ELECTRON TRANSPORT 20-JUN-02 1M1Q TITLE P222 OXIDIZED STRUCTURE OF THE TETRAHEME CYTOCHROME C FROM SHEWANELLA TITLE 2 ONEIDENSIS MR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL TETRAHEME CYTOCHROME C; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR1 KEYWDS ATOMIC STRUCTURE OF OXIDIZED TETRAHEME CYTOCHROME C, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,T.E.MEYER,A.I.TSAPIN,K.H.NEALSON,M.A.CUSANOVICH,J.J.VAN AUTHOR 2 BEEUMEN REVDAT 7 25-DEC-24 1M1Q 1 LINK REVDAT 6 03-MAR-21 1M1Q 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 HETSYN FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 03-OCT-18 1M1Q 1 REMARK REVDAT 4 24-FEB-09 1M1Q 1 VERSN REVDAT 3 01-APR-03 1M1Q 1 JRNL REVDAT 2 11-DEC-02 1M1Q 1 JRNL REVDAT 1 14-AUG-02 1M1Q 0 JRNL AUTH D.LEYS,T.E.MEYER,A.I.TSAPIN,K.H.NEALSON,M.A.CUSANOVICH, JRNL AUTH 2 J.J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURES AT ATOMIC RESOLUTION REVEAL THE NOVEL JRNL TITL 2 CONCEPT OF 'ELECTRON-HARVESTING' AS A ROLE FOR THE SMALL JRNL TITL 3 TETRAHEME CYTOCHROME C JRNL REF J.BIOL.CHEM. V. 277 35703 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12080059 JRNL DOI 10.1074/JBC.M203866200 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.135 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2740 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 55309 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55309 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, TRIS, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.43250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.17000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.06950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.17000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.43250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.06950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CB CG OD1 OD2 REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 LYS A 41 CD CE NZ REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 ASP A 66 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 12 O HOH A 1124 2564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 11 CB GLU A 11 CG -0.131 REMARK 500 ASN A 68 C ASN A 68 O 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 5 CB - CG - CD1 ANGL. DEV. = 10.9 DEGREES REMARK 500 PHE A 8 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 LYS A 20 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 LYS A 20 CD - CE - NZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 27 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP A 66 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 MET A 67 CB - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 MET A 67 CA - CB - CG ANGL. DEV. = 23.6 DEGREES REMARK 500 ASN A 68 CA - C - N ANGL. DEV. = 16.3 DEGREES REMARK 500 ASN A 68 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 GLN A 71 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 ASP A 80 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 69.66 -119.17 REMARK 500 MET A 45 -169.34 -104.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 65 -17.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1177 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1246 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A1248 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1250 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1258 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1272 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A1277 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HEC A 802 NA 91.0 REMARK 620 3 HEC A 802 NB 90.2 90.1 REMARK 620 4 HEC A 802 NC 89.4 179.5 89.5 REMARK 620 5 HEC A 802 ND 89.9 89.5 179.6 90.9 REMARK 620 6 HIS A 39 NE2 178.3 90.0 91.2 89.7 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 HEC A 801 NA 91.9 REMARK 620 3 HEC A 801 NB 91.0 91.2 REMARK 620 4 HEC A 801 NC 87.3 179.1 88.5 REMARK 620 5 HEC A 801 ND 88.4 88.9 179.4 91.4 REMARK 620 6 HIS A 65 NE2 178.5 86.6 88.6 94.2 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HEC A 803 NA 93.4 REMARK 620 3 HEC A 803 NB 91.8 90.7 REMARK 620 4 HEC A 803 NC 85.8 179.1 89.8 REMARK 620 5 HEC A 803 ND 89.4 89.0 178.8 90.5 REMARK 620 6 HIS A 62 NE2 174.2 92.2 89.9 88.6 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 804 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 HEC A 804 NA 87.2 REMARK 620 3 HEC A 804 NB 90.0 89.7 REMARK 620 4 HEC A 804 NC 92.8 179.9 90.3 REMARK 620 5 HEC A 804 ND 88.7 89.7 178.6 90.3 REMARK 620 6 HIS A 79 NE2 178.4 91.4 90.6 88.7 90.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M1P RELATED DB: PDB REMARK 900 THE OXIDIZED PROTEIN IN P21 SPACE GROUP REMARK 900 RELATED ID: 1M1R RELATED DB: PDB REMARK 900 REDUCED P222 CRYSTAL STRUCTURE OF THE TETRAHEME CYTOCHROME C OF REMARK 900 SHEWANELLA ONEIDENSIS MR1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS DERIVED REMARK 999 FROM BOTH N-TERMINAL SEQUENCING AND FROM REMARK 999 THE SEQUENCED GENOME OF SHEWANELLA ONEIDENSIS REMARK 999 STRAIN MR1. THE PROTEIN SEQUENCE REMARK 999 IS, AT PRESENT, NOT AVAILABLE IN ANY PROTEIN REMARK 999 SEQUENCE DATABASE. DBREF 1M1Q A 1 91 UNP Q8EDL6 Q8EDL6_SHEON 26 116 SEQRES 1 A 91 ALA ASP GLN LYS LEU SER ASP PHE HIS ALA GLU SER GLY SEQRES 2 A 91 GLY CYS GLU SER CYS HIS LYS ASP GLY THR PRO SER ALA SEQRES 3 A 91 ASP GLY ALA PHE GLU PHE ALA GLN CYS GLN SER CYS HIS SEQRES 4 A 91 GLY LYS LEU SER GLU MET ASP ALA VAL HIS LYS PRO HIS SEQRES 5 A 91 ASP GLY ASN LEU VAL CYS ALA ASP CYS HIS ALA VAL HIS SEQRES 6 A 91 ASP MET ASN VAL GLY GLN LYS PRO THR CYS GLU SER CYS SEQRES 7 A 91 HIS ASP ASP GLY ARG THR SER ALA SER VAL LEU LYS LYS HET SO4 A 118 5 HET SO4 A 119 5 HET HEC A 801 49 HET HEC A 804 43 HET HEC A 802 47 HET HEC A 803 43 HETNAM SO4 SULFATE ION HETNAM HEC HEME C FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HEC 4(C34 H34 FE N4 O4) FORMUL 8 HOH *295(H2 O) HELIX 1 1 LYS A 4 GLU A 11 1 8 HELIX 2 2 SER A 12 GLY A 13 5 2 HELIX 3 3 GLY A 14 CYS A 18 5 5 HELIX 4 4 HIS A 19 THR A 23 5 5 HELIX 5 5 GLY A 28 GLY A 40 1 13 HELIX 6 6 LYS A 41 MET A 45 5 5 HELIX 7 7 HIS A 49 ASP A 53 5 5 HELIX 8 8 VAL A 57 CYS A 61 5 5 HELIX 9 9 THR A 84 LYS A 90 1 7 LINK SG CYS A 15 CAB HEC A 801 1555 1555 1.83 LINK SG CYS A 18 CAC HEC A 801 1555 1555 1.85 LINK SG CYS A 35 CAB HEC A 802 1555 1555 1.83 LINK SG CYS A 38 CAC HEC A 802 1555 1555 1.84 LINK SG CYS A 58 CAB HEC A 803 1555 1555 1.83 LINK SG CYS A 61 CAC HEC A 803 1555 1555 1.84 LINK SG CYS A 75 CAB HEC A 804 1555 1555 1.82 LINK SG CYS A 78 CAC HEC A 804 1555 1555 1.86 LINK NE2 HIS A 9 FE HEC A 802 1555 1555 1.98 LINK NE2 HIS A 19 FE HEC A 801 1555 1555 1.96 LINK NE2 HIS A 39 FE HEC A 802 1555 1555 1.96 LINK NE2 HIS A 49 FE HEC A 803 1555 1555 1.99 LINK NE2 HIS A 52 FE HEC A 804 1555 1555 1.99 LINK NE2 HIS A 62 FE HEC A 803 1555 1555 1.98 LINK NE2 HIS A 65 FE HEC A 801 1555 1555 1.98 LINK NE2 HIS A 79 FE HEC A 804 1555 1555 1.99 SITE 1 AC1 12 GLU A 11 SER A 12 LYS A 50 HIS A 79 SITE 2 AC1 12 ASP A 80 ASP A 81 ARG A 83 HOH A1036 SITE 3 AC1 12 HOH A1037 HOH A1136 HOH A1137 HOH A1199 SITE 1 AC2 11 SER A 25 ALA A 26 ASP A 27 ALA A 86 SITE 2 AC2 11 HOH A1047 HOH A1072 HOH A1095 HOH A1104 SITE 3 AC2 11 HOH A1121 HOH A1132 HOH A1204 SITE 1 AC3 24 SER A 6 HIS A 9 CYS A 15 SER A 17 SITE 2 AC3 24 CYS A 18 HIS A 19 PRO A 24 SER A 25 SITE 3 AC3 24 GLY A 28 ALA A 29 PHE A 30 GLU A 31 SITE 4 AC3 24 GLN A 34 VAL A 64 HIS A 65 LYS A 90 SITE 5 AC3 24 HEC A 802 HOH A1040 HOH A1060 HOH A1114 SITE 6 AC3 24 HOH A1178 HOH A1184 HOH A1225 HOH A1290 SITE 1 AC4 18 GLN A 3 PHE A 8 PRO A 51 HIS A 52 SITE 2 AC4 18 ASN A 55 LEU A 56 CYS A 75 SER A 77 SITE 3 AC4 18 CYS A 78 HIS A 79 ARG A 83 THR A 84 SITE 4 AC4 18 VAL A 88 HEC A 803 HOH A1113 HOH A1137 SITE 5 AC4 18 HOH A1163 HOH A1166 SITE 1 AC5 21 LEU A 5 HIS A 9 SER A 17 GLN A 34 SITE 2 AC5 21 CYS A 35 CYS A 38 HIS A 39 CYS A 58 SITE 3 AC5 21 HIS A 62 VAL A 69 SER A 77 LYS A 91 SITE 4 AC5 21 HEC A 801 HEC A 803 HOH A1038 HOH A1062 SITE 5 AC5 21 HOH A1088 HOH A1131 HOH A1154 HOH A1211 SITE 6 AC5 21 HOH A1218 SITE 1 AC6 17 HIS A 39 LEU A 42 ASP A 46 VAL A 48 SITE 2 AC6 17 HIS A 49 HIS A 52 CYS A 58 CYS A 61 SITE 3 AC6 17 HIS A 62 PRO A 73 SER A 85 HEC A 802 SITE 4 AC6 17 HEC A 804 HOH A1039 HOH A1252 HOH A1265 SITE 5 AC6 17 HOH A1266 CRYST1 32.865 48.139 58.340 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017141 0.00000