HEADER SUGAR BINDING PROTEIN, PLANT PROTEIN 21-JUN-02 1M26 TITLE CRYSTAL STRUCTURE OF JACALIN-T-ANTIGEN COMPLEX CAVEAT 1M26 A2G J 1 HAS WRONG CHIRALITY AT ATOM C1 A2G K 1 HAS WRONG CAVEAT 2 1M26 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: JACALIN, ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: RESIDUES 85-217 OF GB SEQUENCE ENTRY AA32678; COMPND 5 SYNONYM: AGGLUTININ ALPHA CHAIN; COMPND 6 OTHER_DETAILS: COMPLEXED WITH T-ANTIGEN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: JACALIN, BETA CHAIN; COMPND 9 CHAIN: B, D, F, H; COMPND 10 FRAGMENT: RESIDUES 64-78 OF GB SEQUENCE ENTRY AA32678; COMPND 11 SYNONYM: AGGLUTININ BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 ORGAN: SEEDS; SOURCE 5 OTHER_DETAILS: SYNONYMOUS SCIENTIFIC NAME: ARTOCARPUS HETEROPHYLLUS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 8 ORGANISM_TAXID: 3490; SOURCE 9 ORGAN: SEEDS; SOURCE 10 OTHER_DETAILS: SYNONYMOUS SCIENTIFIC NAME: ARTOCARPUS HETEROPHYLLUS KEYWDS ALL BETA SHEET PROTEIN, BETA PRISM I FOLD, SUGAR BINDING PROTEIN, KEYWDS 2 PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,P.G.RANI,G.B.REDDY,S.BANUMATHI,C.BETZEL,A.SUROLIA, AUTHOR 2 M.VIJAYAN REVDAT 6 14-FEB-24 1M26 1 HETSYN REVDAT 5 29-JUL-20 1M26 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE ATOM REVDAT 4 24-JAN-18 1M26 1 JRNL REVDAT 3 11-OCT-17 1M26 1 REMARK REVDAT 2 24-FEB-09 1M26 1 VERSN REVDAT 1 12-OCT-02 1M26 0 JRNL AUTH A.A.JEYAPRAKASH,P.G.RANI,G.B.REDDY,S.BANUMATHI,C.BETZEL, JRNL AUTH 2 A.SUROLIA,M.VIJAYAN JRNL TITL CRYSTAL STRUCTURE OF THE JACALIN-T-ANTIGEN COMPLEX AND A JRNL TITL 2 COMPARATIVE STUDY OF LECTIN-T-ANTIGEN COMPLEXS JRNL REF J.MOL.BIOL. V. 321 637 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12206779 JRNL DOI 10.1016/S0022-2836(02)00674-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A REMARK 1 TITL 2 MORACEAE PLANT LECTIN WITH A BETA-PRISM FOLD REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 74262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3787 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11692 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 675 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99000 REMARK 3 B22 (A**2) : 6.74000 REMARK 3 B33 (A**2) : -3.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.890 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.420 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.370 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 52.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : TAN.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 278 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74262 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 19.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.02M PHOSPHATE BUFFER AT PH REMARK 280 7.3, VAPOR DIFFUSION, HANGING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL MOLECULE IS A TETRAMER. THERE IS ONE TETRAMER IN REMARK 300 THE ASSYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 SER F 19 REMARK 465 ALA F 20 REMARK 465 SER H 19 REMARK 465 ALA H 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS G 45 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR G 49 O HOH G 621 1.78 REMARK 500 O3 A2G J 1 O5 GAL J 2 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO E 61 C SER E 62 N 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 42 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS A 45 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 PRO A 61 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 PRO A 61 C - N - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 PRO B 14 C - N - CD ANGL. DEV. = 14.6 DEGREES REMARK 500 ALA B 17 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS B 18 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO C 61 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO C 61 C - N - CD ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS C 91 CA - CB - CG ANGL. DEV. = 57.3 DEGREES REMARK 500 LYS C 91 CG - CD - CE ANGL. DEV. = 26.5 DEGREES REMARK 500 ALA D 20 N - CA - C ANGL. DEV. = 23.9 DEGREES REMARK 500 GLN E 42 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO E 61 C - N - CA ANGL. DEV. = 37.1 DEGREES REMARK 500 PRO E 61 C - N - CD ANGL. DEV. = -28.3 DEGREES REMARK 500 PRO E 61 CA - N - CD ANGL. DEV. = -11.0 DEGREES REMARK 500 PRO E 61 N - CD - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO E 61 O - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 GLN F 8 CB - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 THR F 9 N - CA - CB ANGL. DEV. = -19.3 DEGREES REMARK 500 LYS F 18 N - CA - C ANGL. DEV. = -21.5 DEGREES REMARK 500 ILE G 12 CG1 - CB - CG2 ANGL. DEV. = 14.2 DEGREES REMARK 500 THR G 49 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO G 61 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -88.52 -126.35 REMARK 500 ALA A 24 -169.21 -161.34 REMARK 500 PHE C 9 -162.71 -129.72 REMARK 500 LYS C 21 -2.27 -59.25 REMARK 500 THR C 23 -93.13 -120.36 REMARK 500 ALA C 24 -167.70 -160.79 REMARK 500 THR E 23 -96.71 -128.22 REMARK 500 PHE G 9 -159.54 -133.39 REMARK 500 THR G 23 -92.38 -122.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO E 61 -20.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN - ME-ALPHA GALACTOSE COMPLEX DBREF 1M26 A 1 133 GB 289162 AAA32678 85 217 DBREF 1M26 C 1 133 GB 289162 AAA32678 85 217 DBREF 1M26 E 1 133 GB 289162 AAA32678 85 217 DBREF 1M26 G 1 133 GB 289162 AAA32678 85 217 DBREF 1M26 B 4 20 GB 289162 AAA32678 64 80 DBREF 1M26 D 4 20 GB 289162 AAA32678 64 80 DBREF 1M26 F 4 20 GB 289162 AAA32678 64 80 DBREF 1M26 H 4 20 GB 289162 AAA32678 64 80 SEQADV 1M26 VAL A 98 GB 289162 ILE 182 CONFLICT SEQADV 1M26 VAL C 98 GB 289162 ILE 182 CONFLICT SEQADV 1M26 VAL E 98 GB 289162 ILE 182 CONFLICT SEQADV 1M26 VAL G 98 GB 289162 ILE 182 CONFLICT SEQADV 1M26 SER B 19 GB 289162 VAL 77 CONFLICT SEQADV 1M26 ALA B 20 GB 289162 SER 78 CONFLICT SEQADV 1M26 SER D 19 GB 289162 VAL 77 CONFLICT SEQADV 1M26 ALA D 20 GB 289162 SER 78 CONFLICT SEQADV 1M26 SER F 19 GB 289162 VAL 77 CONFLICT SEQADV 1M26 ALA F 20 GB 289162 SER 78 CONFLICT SEQADV 1M26 SER H 19 GB 289162 VAL 77 CONFLICT SEQADV 1M26 ALA H 20 GB 289162 SER 78 CONFLICT SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 17 SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO TRP GLY SEQRES 2 B 17 ALA LYS SER ALA SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 17 SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO TRP GLY SEQRES 2 D 17 ALA LYS SER ALA SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 17 SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO TRP GLY SEQRES 2 F 17 ALA LYS SER ALA SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 17 SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO TRP GLY SEQRES 2 H 17 ALA LYS SER ALA HET A2G I 1 15 HET GAL I 2 11 HET A2G J 1 16 HET GAL J 2 11 HET A2G K 1 16 HET GAL K 2 11 HET A2G L 1 15 HET GAL L 2 11 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 9 A2G 4(C8 H15 N O6) FORMUL 9 GAL 4(C6 H12 O6) FORMUL 13 HOH *497(H2 O) SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O ILE A 120 N LYS A 2 SHEET 3 A 8 LEU A 124 SER A 132 -1 O SER A 132 N LEU A 112 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 10 N LEU A 131 SHEET 5 A 8 THR C 102 ASN C 110 -1 O ASN C 110 N ILE B 11 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O LYS C 87 N GLU C 67 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 SER A 37 VAL A 40 0 SHEET 2 B 4 ILE A 25 LEU A 34 -1 N TYR A 32 O TYR A 39 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N GLU A 14 O VAL A 31 SHEET 4 B 4 THR A 52 SER A 57 -1 O ILE A 56 N ILE A 15 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N GLU A 67 O LYS A 87 SHEET 4 C 8 THR A 102 ASN A 110 -1 O THR A 102 N THR A 72 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O ILE D 11 N ASN A 110 SHEET 6 C 8 LEU C 124 SER C 132 -1 N LEU C 131 O VAL D 10 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N LEU C 112 O SER C 132 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N PHE C 4 O GLY C 118 SHEET 1 D 4 SER C 37 VAL C 40 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N LEU C 34 O SER C 37 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N ASN C 16 O GLN C 29 SHEET 4 D 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O ILE E 120 N LYS E 2 SHEET 3 E 8 LEU E 124 SER E 132 -1 O SER E 132 N LEU E 112 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 10 N LEU E 131 SHEET 5 E 8 THR G 102 ASN G 110 -1 O GLU G 109 N ILE F 11 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N VAL G 68 O LEU G 106 SHEET 7 E 8 TYR G 78 THR G 88 -1 O TYR G 78 N VAL G 75 SHEET 8 E 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 HIS E 44 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N LEU E 34 O SER E 37 SHEET 3 F 4 GLY E 11 TYR E 19 -1 N ASN E 16 O GLN E 29 SHEET 4 F 4 THR E 52 SER E 57 -1 O THR E 52 N TYR E 19 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N GLU E 67 O LYS E 87 SHEET 4 G 8 THR E 102 ASN E 110 -1 O LEU E 106 N VAL E 68 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O ILE H 11 N ASN E 110 SHEET 6 G 8 LEU G 124 SER G 132 -1 N LEU G 131 O VAL H 10 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N LYS G 117 O SER G 128 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N LYS G 2 O ILE G 120 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N TYR G 32 O TYR G 39 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N ASN G 16 O GLN G 29 SHEET 4 H 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19 LINK O3 A2G I 1 C1 GAL I 2 1555 1555 1.45 LINK O3 A2G J 1 C1 GAL J 2 1555 1555 1.43 LINK O3 A2G K 1 C1 GAL K 2 1555 1555 1.44 LINK O3 A2G L 1 C1 GAL L 2 1555 1555 1.46 CISPEP 1 PHE A 60 PRO A 61 0 0.44 CISPEP 2 GLY A 94 PRO A 95 0 0.52 CISPEP 3 GLY B 13 PRO B 14 0 -3.98 CISPEP 4 PHE C 60 PRO C 61 0 -2.10 CISPEP 5 GLY C 94 PRO C 95 0 0.57 CISPEP 6 GLY D 13 PRO D 14 0 0.09 CISPEP 7 PHE E 60 PRO E 61 0 20.50 CISPEP 8 GLY E 94 PRO E 95 0 0.04 CISPEP 9 GLY F 13 PRO F 14 0 -0.06 CISPEP 10 PHE G 60 PRO G 61 0 1.94 CISPEP 11 GLY G 94 PRO G 95 0 -0.08 CISPEP 12 GLY H 13 PRO H 14 0 0.24 CRYST1 58.920 78.000 67.910 90.00 100.73 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016972 0.000000 0.003217 0.00000 SCALE2 0.000000 0.012821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014989 0.00000