HEADER HYDROLASE 27-JUN-02 1M38 TITLE STRUCTURE OF INORGANIC PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IPP1P, PYROPHOSPHATE PHOSPHO-HYDROLASE, PPASE; COMPND 5 EC: 3.6.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS PYROPHOSPHATE PHOSPHOHYDROLASE, HYDROLASE, COBALT EXPDTA X-RAY DIFFRACTION AUTHOR I.P.KURANOVA,K.M.POLYAKOV,V.M.LEVDIKOV,E.A.SMIRNOVA,W.E.HOHNE, AUTHOR 2 V.S.LAMZIN,R.MEIJERS REVDAT 4 14-FEB-24 1M38 1 REMARK LINK REVDAT 3 24-FEB-09 1M38 1 VERSN REVDAT 2 08-MAR-05 1M38 1 JRNL REVDAT 1 28-JAN-03 1M38 0 JRNL AUTH I.P.KURANOVA,K.M.POLYAKOV,E.A.SMIRNOVA,W.E.HOHNE,V.S.LAMZIN, JRNL AUTH 2 R.MEIJERS JRNL TITL THREE-DIMENSIONAL STRUCTURE OF SACCHAROMYCES CEREVISIAE JRNL TITL 2 INORGANIC PYROPHOSPHATASE COMPLEXED WITH COBALT AND JRNL TITL 3 PHOSPHATE IONS JRNL REF CRYSTALLOGRAPHY REPORTS V. 48 953 2003 JRNL REFN ISSN 1063-7745 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.H.HARUTYUNYAN,I.P.KURANOVA,B.K.VAINSTEIN,W.E.HOHNE, REMARK 1 AUTH 2 V.S.LAMZIN,Z.DAUTHER,A.V.TEPLYAKOV,K.S.WILSON REMARK 1 TITL X-RAY STRUCTURE OF YEAST INORGANIC PYROPHOSPHATASE REMARK 1 REF EUR.J.BIOCHEM. V. 239 220 1996 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 17.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.650 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BLANC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BUFFER, COBALT CHLORIDE, REMARK 280 IMIDODIPHOSPHATE, 2-METHYL-2,4-PENTADIOLE, PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 283 REMARK 465 GLY A 284 REMARK 465 SER A 285 REMARK 465 VAL A 286 REMARK 465 MET B 0 REMARK 465 SER B 283 REMARK 465 GLY B 284 REMARK 465 SER B 285 REMARK 465 VAL B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 76 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3329 O HOH A 3638 2.14 REMARK 500 O HOH A 3644 O HOH A 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 2 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 18 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 78 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 PHE A 79 CB - CG - CD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 PRO A 85 N - CA - CB ANGL. DEV. = 6.8 DEGREES REMARK 500 PRO A 85 N - CD - CG ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 102 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 120 CB - CG - OD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 183 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 277 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 TYR B 15 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU B 20 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU B 20 CG - CD - OE2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ILE B 32 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLU B 101 CA - CB - CG ANGL. DEV. = 21.3 DEGREES REMARK 500 ASP B 120 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 183 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 HIS B 223 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 ASN B 244 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU B 247 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU B 247 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 PRO B 248 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO B 248 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 152 58.90 -145.22 REMARK 500 ASP A 236 101.14 -161.04 REMARK 500 SER A 254 101.99 -163.15 REMARK 500 SER A 265 57.21 -151.92 REMARK 500 ASN B 11 31.42 72.84 REMARK 500 ASP B 37 88.78 -161.41 REMARK 500 GLN B 98 41.78 71.63 REMARK 500 GLU B 148 91.79 9.40 REMARK 500 SER B 234 131.72 146.87 REMARK 500 ASP B 249 15.44 -62.25 REMARK 500 SER B 254 104.23 -161.10 REMARK 500 SER B 265 64.72 -151.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 84 PRO A 85 35.28 REMARK 500 PHE B 84 PRO B 85 34.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 84 14.71 REMARK 500 SER B 27 -13.70 REMARK 500 PHE B 84 11.96 REMARK 500 VAL B 134 10.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 58 OE2 REMARK 620 2 PO4 A3301 O4 100.2 REMARK 620 3 HOH A3464 O 106.7 88.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 115 OD1 REMARK 620 2 ASP A 120 OD2 167.4 REMARK 620 3 ASP A 152 OD2 85.8 81.8 REMARK 620 4 PO4 A3301 O2 104.8 80.3 103.1 REMARK 620 5 PO4 A3301 O3 99.1 93.3 161.2 58.0 REMARK 620 6 HOH A3667 O 91.8 100.7 176.1 74.5 16.9 REMARK 620 7 HOH A3668 O 89.9 93.3 95.0 16.7 67.0 82.0 REMARK 620 8 HOH A3670 O 85.9 92.1 91.2 162.5 107.2 91.7 172.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 PO4 A3301 O3 91.3 REMARK 620 3 PO4 A3301 O1 110.7 67.8 REMARK 620 4 HOH A3324 O 76.3 102.6 167.7 REMARK 620 5 HOH A3667 O 89.7 18.9 85.9 83.9 REMARK 620 6 HOH A3669 O 96.2 66.7 14.5 167.1 85.6 REMARK 620 7 HOH A3671 O 86.3 162.9 97.3 93.3 175.6 96.7 REMARK 620 8 HOH A3672 O 173.7 90.7 75.6 97.4 90.3 90.1 93.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD2 REMARK 620 2 ASP A 152 OD1 86.2 REMARK 620 3 PO4 A3301 O2 153.2 97.0 REMARK 620 4 HOH A3364 O 80.9 81.3 73.3 REMARK 620 5 HOH A3386 O 99.1 90.6 107.5 171.9 REMARK 620 6 HOH A3565 O 91.4 177.2 84.7 97.1 91.0 REMARK 620 7 HOH A3668 O 167.7 83.0 25.0 91.5 87.0 99.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 115 OD1 REMARK 620 2 ASP B 120 OD1 158.5 REMARK 620 3 ASP B 152 OD1 82.9 78.0 REMARK 620 4 HOH B3788 O 94.4 94.6 88.0 REMARK 620 5 HOH B3789 O 75.1 124.2 157.9 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 ASP B 152 OD1 74.3 REMARK 620 3 HOH B3545 O 91.7 163.3 REMARK 620 4 HOH B3789 O 87.7 97.9 71.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 HOH B3542 O 90.6 REMARK 620 3 HOH B3545 O 89.3 81.3 REMARK 620 4 HOH B3790 O 89.2 169.1 87.9 REMARK 620 5 HOH B3791 O 85.4 97.2 174.4 93.6 REMARK 620 6 HOH B3792 O 163.8 97.5 105.8 85.5 79.7 REMARK 620 7 HOH B3793 O 156.2 65.9 83.8 113.2 100.5 36.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 3501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3301 DBREF 1M38 A 0 286 UNP P00817 IPYR_YEAST 1 287 DBREF 1M38 B 0 286 UNP P00817 IPYR_YEAST 1 287 SEQRES 1 A 287 MET THR TYR THR THR ARG GLN ILE GLY ALA LYS ASN THR SEQRES 2 A 287 LEU GLU TYR LYS VAL TYR ILE GLU LYS ASP GLY LYS PRO SEQRES 3 A 287 VAL SER ALA PHE HIS ASP ILE PRO LEU TYR ALA ASP LYS SEQRES 4 A 287 GLU ASN ASN ILE PHE ASN MET VAL VAL GLU ILE PRO ARG SEQRES 5 A 287 TRP THR ASN ALA LYS LEU GLU ILE THR LYS GLU GLU THR SEQRES 6 A 287 LEU ASN PRO ILE ILE GLN ASP THR LYS LYS GLY LYS LEU SEQRES 7 A 287 ARG PHE VAL ARG ASN CYS PHE PRO HIS HIS GLY TYR ILE SEQRES 8 A 287 HIS ASN TYR GLY ALA PHE PRO GLN THR TRP GLU ASP PRO SEQRES 9 A 287 ASN VAL SER HIS PRO GLU THR LYS ALA VAL GLY ASP ASN SEQRES 10 A 287 ASP PRO ILE ASP VAL LEU GLU ILE GLY GLU THR ILE ALA SEQRES 11 A 287 TYR THR GLY GLN VAL LYS GLN VAL LYS ALA LEU GLY ILE SEQRES 12 A 287 MET ALA LEU LEU ASP GLU GLY GLU THR ASP TRP LYS VAL SEQRES 13 A 287 ILE ALA ILE ASP ILE ASN ASP PRO LEU ALA PRO LYS LEU SEQRES 14 A 287 ASN ASP ILE GLU ASP VAL GLU LYS TYR PHE PRO GLY LEU SEQRES 15 A 287 LEU ARG ALA THR ASN GLU TRP PHE ARG ILE TYR LYS ILE SEQRES 16 A 287 PRO ASP GLY LYS PRO GLU ASN GLN PHE ALA PHE SER GLY SEQRES 17 A 287 GLU ALA LYS ASN LYS LYS TYR ALA LEU ASP ILE ILE LYS SEQRES 18 A 287 GLU THR HIS ASP SER TRP LYS GLN LEU ILE ALA GLY LYS SEQRES 19 A 287 SER SER ASP SER LYS GLY ILE ASP LEU THR ASN VAL THR SEQRES 20 A 287 LEU PRO ASP THR PRO THR TYR SER LYS ALA ALA SER ASP SEQRES 21 A 287 ALA ILE PRO PRO ALA SER PRO LYS ALA ASP ALA PRO ILE SEQRES 22 A 287 ASP LYS SER ILE ASP LYS TRP PHE PHE ILE SER GLY SER SEQRES 23 A 287 VAL SEQRES 1 B 287 MET THR TYR THR THR ARG GLN ILE GLY ALA LYS ASN THR SEQRES 2 B 287 LEU GLU TYR LYS VAL TYR ILE GLU LYS ASP GLY LYS PRO SEQRES 3 B 287 VAL SER ALA PHE HIS ASP ILE PRO LEU TYR ALA ASP LYS SEQRES 4 B 287 GLU ASN ASN ILE PHE ASN MET VAL VAL GLU ILE PRO ARG SEQRES 5 B 287 TRP THR ASN ALA LYS LEU GLU ILE THR LYS GLU GLU THR SEQRES 6 B 287 LEU ASN PRO ILE ILE GLN ASP THR LYS LYS GLY LYS LEU SEQRES 7 B 287 ARG PHE VAL ARG ASN CYS PHE PRO HIS HIS GLY TYR ILE SEQRES 8 B 287 HIS ASN TYR GLY ALA PHE PRO GLN THR TRP GLU ASP PRO SEQRES 9 B 287 ASN VAL SER HIS PRO GLU THR LYS ALA VAL GLY ASP ASN SEQRES 10 B 287 ASP PRO ILE ASP VAL LEU GLU ILE GLY GLU THR ILE ALA SEQRES 11 B 287 TYR THR GLY GLN VAL LYS GLN VAL LYS ALA LEU GLY ILE SEQRES 12 B 287 MET ALA LEU LEU ASP GLU GLY GLU THR ASP TRP LYS VAL SEQRES 13 B 287 ILE ALA ILE ASP ILE ASN ASP PRO LEU ALA PRO LYS LEU SEQRES 14 B 287 ASN ASP ILE GLU ASP VAL GLU LYS TYR PHE PRO GLY LEU SEQRES 15 B 287 LEU ARG ALA THR ASN GLU TRP PHE ARG ILE TYR LYS ILE SEQRES 16 B 287 PRO ASP GLY LYS PRO GLU ASN GLN PHE ALA PHE SER GLY SEQRES 17 B 287 GLU ALA LYS ASN LYS LYS TYR ALA LEU ASP ILE ILE LYS SEQRES 18 B 287 GLU THR HIS ASP SER TRP LYS GLN LEU ILE ALA GLY LYS SEQRES 19 B 287 SER SER ASP SER LYS GLY ILE ASP LEU THR ASN VAL THR SEQRES 20 B 287 LEU PRO ASP THR PRO THR TYR SER LYS ALA ALA SER ASP SEQRES 21 B 287 ALA ILE PRO PRO ALA SER PRO LYS ALA ASP ALA PRO ILE SEQRES 22 B 287 ASP LYS SER ILE ASP LYS TRP PHE PHE ILE SER GLY SER SEQRES 23 B 287 VAL HET CO A 401 1 HET CO A 402 1 HET CO A 403 1 HET CO A 404 1 HET PO4 A3301 5 HET CO B 401 2 HET CO B 402 1 HET PO4 B3501 5 HETNAM CO COBALT (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 CO 6(CO 2+) FORMUL 7 PO4 2(O4 P 3-) FORMUL 11 HOH *666(H2 O) HELIX 1 1 LYS A 38 ASN A 40 5 3 HELIX 2 2 LEU A 164 LEU A 168 5 5 HELIX 3 3 ASP A 170 PHE A 178 1 9 HELIX 4 4 GLY A 180 TYR A 192 1 13 HELIX 5 5 LYS A 193 GLY A 197 5 5 HELIX 6 6 PHE A 205 GLY A 207 5 3 HELIX 7 7 ASN A 211 ALA A 231 1 21 HELIX 8 8 SER A 254 SER A 258 5 5 HELIX 9 9 ASP A 273 ASP A 277 5 5 HELIX 10 10 LEU B 164 LEU B 168 5 5 HELIX 11 11 ASP B 170 PHE B 178 1 9 HELIX 12 12 GLY B 180 TYR B 192 1 13 HELIX 13 13 LYS B 193 GLY B 197 5 5 HELIX 14 14 PHE B 205 GLU B 208 5 4 HELIX 15 15 LYS B 212 ALA B 231 1 20 HELIX 16 16 SER B 254 ILE B 261 1 8 HELIX 17 17 ASP B 273 ASP B 277 5 5 SHEET 1 A 4 SER A 265 LYS A 267 0 SHEET 2 A 4 TYR A 2 ALA A 9 1 O GLN A 6 N SER A 265 SHEET 3 A 4 LYS A 16 LYS A 21 -1 O LYS A 16 N ILE A 7 SHEET 4 A 4 LYS A 24 VAL A 26 -1 O LYS A 24 N LYS A 21 SHEET 1 B 9 TYR A 35 ASP A 37 0 SHEET 2 B 9 ILE A 42 ILE A 49 -1 N ILE A 42 O ASP A 37 SHEET 3 B 9 ASN A 92 ALA A 95 -1 N TYR A 93 O ILE A 49 SHEET 4 B 9 ASP A 120 GLU A 123 -1 N VAL A 121 O GLY A 94 SHEET 5 B 9 LYS A 154 ASP A 159 1 O VAL A 155 N LEU A 122 SHEET 6 B 9 VAL A 134 MET A 143 -1 N LYS A 138 O ILE A 158 SHEET 7 B 9 ALA A 209 LYS A 210 -1 N LYS A 210 O ILE A 142 SHEET 8 B 9 VAL A 134 MET A 143 -1 O ILE A 142 N LYS A 210 SHEET 9 B 9 ILE A 42 ILE A 49 -1 N PHE A 43 O VAL A 137 SHEET 1 C 2 LEU A 57 ILE A 59 0 SHEET 2 C 2 ILE A 68 GLN A 70 -1 N ILE A 69 O GLU A 58 SHEET 1 D 2 THR A 72 LYS A 73 0 SHEET 2 D 2 LYS A 76 LEU A 77 -1 N LYS A 76 O LYS A 73 SHEET 1 E 2 SER A 106 HIS A 107 0 SHEET 2 E 2 ALA A 112 VAL A 113 -1 O ALA A 112 N HIS A 107 SHEET 1 F 2 ASN A 82 CYS A 83 0 SHEET 2 F 2 TRP A 279 PHE A 280 1 N PHE A 280 O ASN A 82 SHEET 1 G 3 GLN A 202 PHE A 203 0 SHEET 2 G 3 LEU A 145 ASP A 147 -1 N LEU A 146 O GLN A 202 SHEET 3 G 3 GLU A 150 THR A 151 -1 O GLU A 150 N ASP A 147 SHEET 1 H 4 SER B 265 LYS B 267 0 SHEET 2 H 4 TYR B 2 ALA B 9 1 O GLN B 6 N SER B 265 SHEET 3 H 4 LYS B 16 LYS B 21 -1 O LYS B 16 N ILE B 7 SHEET 4 H 4 LYS B 24 VAL B 26 -1 N LYS B 24 O LYS B 21 SHEET 1 I11 TYR B 35 ASP B 37 0 SHEET 2 I11 ILE B 42 ILE B 49 -1 O ILE B 42 N ALA B 36 SHEET 3 I11 ASN B 92 ALA B 95 -1 N TYR B 93 O ILE B 49 SHEET 4 I11 ASP B 120 GLU B 123 -1 O VAL B 121 N GLY B 94 SHEET 5 I11 GLU B 150 ASP B 159 1 O TRP B 153 N ASP B 120 SHEET 6 I11 VAL B 134 ASP B 147 -1 N LYS B 138 O ILE B 158 SHEET 7 I11 LYS B 210 ASN B 211 -1 N LYS B 210 O ILE B 142 SHEET 8 I11 VAL B 134 ASP B 147 -1 O ILE B 142 N LYS B 210 SHEET 9 I11 GLN B 202 PHE B 203 -1 O GLN B 202 N LEU B 146 SHEET 10 I11 VAL B 134 ASP B 147 -1 N LEU B 146 O GLN B 202 SHEET 11 I11 ILE B 42 ILE B 49 -1 N PHE B 43 O VAL B 137 SHEET 1 J 2 ASN B 82 CYS B 83 0 SHEET 2 J 2 TRP B 279 PHE B 280 1 N PHE B 280 O ASN B 82 SHEET 1 K 2 LEU B 57 ILE B 59 0 SHEET 2 K 2 ILE B 68 GLN B 70 -1 O ILE B 69 N GLU B 58 SHEET 1 L 2 THR B 72 LYS B 73 0 SHEET 2 L 2 LYS B 76 LEU B 77 -1 N LYS B 76 O LYS B 73 LINK OE2 GLU A 58 CO CO A 403 1555 1555 2.16 LINK OD1 ASP A 115 CO CO A 401 1555 1555 2.14 LINK OD2 ASP A 120 CO CO A 401 1555 1555 2.18 LINK OD1 ASP A 120 CO CO A 402 1555 1555 1.95 LINK OD2 ASP A 147 CO CO A 404 1555 1555 2.15 LINK OD2 ASP A 152 CO CO A 401 1555 1555 1.99 LINK OD1 ASP A 152 CO CO A 404 1555 1555 2.22 LINK CO CO A 401 O2 PO4 A3301 1555 1555 2.69 LINK CO CO A 401 O3 PO4 A3301 1555 1555 2.27 LINK CO CO A 401 O HOH A3667 1555 1555 2.34 LINK CO CO A 401 O HOH A3668 1555 1555 2.08 LINK CO CO A 401 O HOH A3670 1555 1555 2.13 LINK CO CO A 402 O3 PO4 A3301 1555 1555 2.02 LINK CO CO A 402 O1 PO4 A3301 1555 1555 2.30 LINK CO CO A 402 O HOH A3324 1555 1555 2.39 LINK CO CO A 402 O HOH A3667 1555 1555 2.10 LINK CO CO A 402 O HOH A3669 1555 1555 2.01 LINK CO CO A 402 O HOH A3671 1555 1555 2.14 LINK CO CO A 402 O HOH A3672 1555 1555 2.25 LINK CO CO A 403 O4 PO4 A3301 1555 1555 2.04 LINK CO CO A 403 O HOH A3464 1555 1555 2.29 LINK CO CO A 404 O2 PO4 A3301 1555 1555 2.16 LINK CO CO A 404 O HOH A3364 1555 1555 2.19 LINK CO CO A 404 O HOH A3386 1555 1555 2.12 LINK CO CO A 404 O HOH A3565 1555 1555 2.23 LINK CO CO A 404 O HOH A3668 1555 1555 1.89 LINK OD1 ASP B 115 CO A CO B 401 1555 1555 2.33 LINK OD1 ASP B 120 CO B CO B 401 1555 1555 2.27 LINK OD1 ASP B 120 CO A CO B 401 1555 1555 2.19 LINK OD2 ASP B 120 CO CO B 402 1555 1555 2.18 LINK OD1 ASP B 152 CO B CO B 401 1555 1555 2.10 LINK OD1 ASP B 152 CO A CO B 401 1555 1555 2.01 LINK CO B CO B 401 O HOH B3545 1555 1555 2.59 LINK CO A CO B 401 O HOH B3788 1555 1555 2.17 LINK CO A CO B 401 O HOH B3789 1555 1555 1.56 LINK CO B CO B 401 O HOH B3789 1555 1555 2.53 LINK CO CO B 402 O HOH B3542 1555 1555 2.40 LINK CO CO B 402 O HOH B3545 1555 1555 2.40 LINK CO CO B 402 O HOH B3790 1555 1555 2.14 LINK CO CO B 402 O HOH B3791 1555 1555 2.06 LINK CO CO B 402 O HOH B3792 1555 1555 2.09 LINK CO CO B 402 O HOH B3793 1555 1555 2.73 SITE 1 AC1 8 ASP A 115 ASP A 120 ASP A 152 CO A 402 SITE 2 AC1 8 PO4 A3301 HOH A3667 HOH A3668 HOH A3670 SITE 1 AC2 8 ASP A 120 CO A 401 PO4 A3301 HOH A3324 SITE 2 AC2 8 HOH A3667 HOH A3669 HOH A3671 HOH A3672 SITE 1 AC3 4 LYS A 56 GLU A 58 PO4 A3301 HOH A3464 SITE 1 AC4 7 ASP A 147 ASP A 152 PO4 A3301 HOH A3364 SITE 2 AC4 7 HOH A3386 HOH A3565 HOH A3668 SITE 1 AC5 6 ASP B 115 ASP B 120 ASP B 152 HOH B3545 SITE 2 AC5 6 HOH B3788 HOH B3789 SITE 1 AC6 7 ASP B 120 HOH B3542 HOH B3545 HOH B3790 SITE 2 AC6 7 HOH B3791 HOH B3792 HOH B3793 SITE 1 AC7 10 LYS A 74 LYS B 56 ARG B 78 ASP B 147 SITE 2 AC7 10 TYR B 192 LYS B 193 HOH B3642 HOH B3653 SITE 3 AC7 10 HOH B3766 HOH B3781 SITE 1 AC8 18 LYS A 56 GLU A 58 TYR A 93 ASP A 115 SITE 2 AC8 18 ASP A 117 ASP A 120 ASP A 152 CO A 401 SITE 3 AC8 18 CO A 402 CO A 403 CO A 404 HOH A3364 SITE 4 AC8 18 HOH A3464 HOH A3565 HOH A3667 HOH A3668 SITE 5 AC8 18 HOH A3669 HOH A3672 CRYST1 51.690 93.230 69.840 90.00 99.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019350 0.000000 0.003320 0.00000 SCALE2 0.000000 0.010730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014530 0.00000