data_1M6F
# 
_entry.id   1M6F 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.389 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1M6F         pdb_00001m6f 10.2210/pdb1m6f/pdb 
NDB   DD0052       ?            ?                   
RCSB  RCSB016655   ?            ?                   
WWPDB D_1000016655 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2002-11-15 
2 'Structure model' 1 1 2008-04-28 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-11 
5 'Structure model' 1 4 2024-02-14 
6 'Structure model' 1 5 2024-04-03 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
7 5 'Structure model' 'Structure summary'         
8 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software                      
2 5 'Structure model' chem_comp                     
3 5 'Structure model' chem_comp_atom                
4 5 'Structure model' chem_comp_bond                
5 5 'Structure model' database_2                    
6 5 'Structure model' pdbx_struct_conn_angle        
7 5 'Structure model' struct_conn                   
8 5 'Structure model' struct_site                   
9 6 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  5 'Structure model' '_chem_comp.pdbx_synonyms'                    
2  5 'Structure model' '_database_2.pdbx_DOI'                        
3  5 'Structure model' '_database_2.pdbx_database_accession'         
4  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'  
5  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
6  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
7  5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'  
8  5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
9  5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
10 5 'Structure model' '_pdbx_struct_conn_angle.value'               
11 5 'Structure model' '_struct_conn.pdbx_dist_value'                
12 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
13 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
14 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
15 5 'Structure model' '_struct_site.pdbx_auth_asym_id'              
16 5 'Structure model' '_struct_site.pdbx_auth_comp_id'              
17 5 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1M6F 
_pdbx_database_status.recvd_initial_deposition_date   2002-07-16 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Nguyen, B.'    1 
'Lee, M.P.H.'   2 
'Hamelberg, D.' 3 
'Joubert, A.'   4 
'Bailly, C.'    5 
'Brun, R.'      6 
'Neidle, S.'    7 
'Wilson, W.D.'  8 
# 
_citation.id                        primary 
_citation.title                     
'Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            124 
_citation.page_first                13680 
_citation.page_last                 13681 
_citation.year                      2002 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12431090 
_citation.pdbx_database_id_DOI      10.1021/ja027953c 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Nguyen, B.'    1 ? 
primary 'Lee, M.P.H.'   2 ? 
primary 'Hamelberg, D.' 3 ? 
primary 'Joubert, A.'   4 ? 
primary 'Bailly, C.'    5 ? 
primary 'Brun, R.'      6 ? 
primary 'Neidle, S.'    7 ? 
primary 'Wilson, W.D.'  8 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
;
3663.392 2   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                                                                                              
24.305   1   ? ? ? ? 
3 non-polymer syn "3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM" 
352.417  1   ? ? ? ? 
4 water       nat water                                                                                                        
18.015   117 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION'                                                                                              MG  
3 "3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM" CGQ 
4 water                                                                                                        HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
CGQ non-polymer   . "3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM" 
'CGP40215A; BIS[[3-(AMINOIMINOMETHYL)PHENYL]METHYLENE] CARBONIMIDIC DIHYDRAZIDE' 'C17 H22 N9 3'    352.417 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                                                         ? 
'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                                                          ? 
'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                                                         ? 
'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                                                                 ? 
'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                                                                                        ? 
'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION'                                                                                              ? 
'Mg 2'            24.305  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1001 1001 DC C A . n 
A 1 2  DG 2  1002 1002 DG G A . n 
A 1 3  DC 3  1003 1003 DC C A . n 
A 1 4  DG 4  1004 1004 DG G A . n 
A 1 5  DA 5  1005 1005 DA A A . n 
A 1 6  DA 6  1006 1006 DA A A . n 
A 1 7  DT 7  1007 1007 DT T A . n 
A 1 8  DT 8  1008 1008 DT T A . n 
A 1 9  DC 9  1009 1009 DC C A . n 
A 1 10 DG 10 1010 1010 DG G A . n 
A 1 11 DC 11 1011 1011 DC C A . n 
A 1 12 DG 12 1012 1012 DG G A . n 
B 1 1  DC 1  2013 2013 DC C B . n 
B 1 2  DG 2  2014 2014 DG G B . n 
B 1 3  DC 3  2015 2015 DC C B . n 
B 1 4  DG 4  2016 2016 DG G B . n 
B 1 5  DA 5  2017 2017 DA A B . n 
B 1 6  DA 6  2018 2018 DA A B . n 
B 1 7  DT 7  2019 2019 DT T B . n 
B 1 8  DT 8  2020 2020 DT T B . n 
B 1 9  DC 9  2021 2021 DC C B . n 
B 1 10 DG 10 2022 2022 DG G B . n 
B 1 11 DC 11 2023 2023 DC C B . n 
B 1 12 DG 12 2024 2024 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  4026 4026 MG  MO6 A . 
D 3 CGQ 1  3025 3025 CGQ CGQ B . 
E 4 HOH 1  8002 8002 HOH HOH A . 
E 4 HOH 2  8004 8004 HOH HOH A . 
E 4 HOH 3  8009 8009 HOH HOH A . 
E 4 HOH 4  8010 8010 HOH HOH A . 
E 4 HOH 5  8011 8011 HOH HOH A . 
E 4 HOH 6  8013 8013 HOH HOH A . 
E 4 HOH 7  8014 8014 HOH HOH A . 
E 4 HOH 8  8016 8016 HOH HOH A . 
E 4 HOH 9  8018 8018 HOH HOH A . 
E 4 HOH 10 8019 8019 HOH HOH A . 
E 4 HOH 11 8020 8020 HOH HOH A . 
E 4 HOH 12 8021 8021 HOH HOH A . 
E 4 HOH 13 8022 8022 HOH HOH A . 
E 4 HOH 14 8025 8025 HOH HOH A . 
E 4 HOH 15 8028 8028 HOH HOH A . 
E 4 HOH 16 8031 8031 HOH HOH A . 
E 4 HOH 17 8032 8032 HOH HOH A . 
E 4 HOH 18 8034 8034 HOH HOH A . 
E 4 HOH 19 8035 8035 HOH HOH A . 
E 4 HOH 20 8036 8036 HOH HOH A . 
E 4 HOH 21 8037 8037 HOH HOH A . 
E 4 HOH 22 8038 8038 HOH HOH A . 
E 4 HOH 23 8039 8039 HOH HOH A . 
E 4 HOH 24 8040 8040 HOH HOH A . 
E 4 HOH 25 8041 8041 HOH HOH A . 
E 4 HOH 26 8044 8044 HOH HOH A . 
E 4 HOH 27 8051 8051 HOH HOH A . 
E 4 HOH 28 8054 8054 HOH HOH A . 
E 4 HOH 29 8056 8056 HOH HOH A . 
E 4 HOH 30 8057 8057 HOH HOH A . 
E 4 HOH 31 8058 8058 HOH HOH A . 
E 4 HOH 32 8059 8059 HOH HOH A . 
E 4 HOH 33 8060 8060 HOH HOH A . 
E 4 HOH 34 8065 8065 HOH HOH A . 
E 4 HOH 35 8067 8067 HOH HOH A . 
E 4 HOH 36 8068 8068 HOH HOH A . 
E 4 HOH 37 8071 8071 HOH HOH A . 
E 4 HOH 38 8075 8075 HOH HOH A . 
E 4 HOH 39 8078 8078 HOH HOH A . 
E 4 HOH 40 8084 8084 HOH HOH A . 
E 4 HOH 41 8085 8085 HOH HOH A . 
E 4 HOH 42 8086 8086 HOH HOH A . 
E 4 HOH 43 8087 8087 HOH HOH A . 
E 4 HOH 44 8088 8088 HOH HOH A . 
E 4 HOH 45 8090 8090 HOH HOH A . 
E 4 HOH 46 8091 8091 HOH HOH A . 
E 4 HOH 47 8094 8094 HOH HOH A . 
E 4 HOH 48 8095 8095 HOH HOH A . 
E 4 HOH 49 8096 8096 HOH HOH A . 
E 4 HOH 50 8097 8097 HOH HOH A . 
E 4 HOH 51 8100 8100 HOH HOH A . 
E 4 HOH 52 8101 8101 HOH HOH A . 
E 4 HOH 53 8102 8102 HOH HOH A . 
E 4 HOH 54 8105 8105 HOH HOH A . 
E 4 HOH 55 8109 8109 HOH HOH A . 
E 4 HOH 56 8110 8110 HOH HOH A . 
E 4 HOH 57 8111 8111 HOH HOH A . 
E 4 HOH 58 8113 4026 HOH MO6 A . 
E 4 HOH 59 8114 4026 HOH MO6 A . 
E 4 HOH 60 8115 4026 HOH MO6 A . 
E 4 HOH 61 8116 4026 HOH MO6 A . 
E 4 HOH 62 8117 4026 HOH MO6 A . 
F 4 HOH 1  8001 8001 HOH HOH B . 
F 4 HOH 2  8003 8003 HOH HOH B . 
F 4 HOH 3  8005 8005 HOH HOH B . 
F 4 HOH 4  8006 8006 HOH HOH B . 
F 4 HOH 5  8007 8007 HOH HOH B . 
F 4 HOH 6  8008 8008 HOH HOH B . 
F 4 HOH 7  8012 8012 HOH HOH B . 
F 4 HOH 8  8015 8015 HOH HOH B . 
F 4 HOH 9  8017 8017 HOH HOH B . 
F 4 HOH 10 8023 8023 HOH HOH B . 
F 4 HOH 11 8024 8024 HOH HOH B . 
F 4 HOH 12 8026 8026 HOH HOH B . 
F 4 HOH 13 8027 8027 HOH HOH B . 
F 4 HOH 14 8029 8029 HOH HOH B . 
F 4 HOH 15 8030 8030 HOH HOH B . 
F 4 HOH 16 8033 8033 HOH HOH B . 
F 4 HOH 17 8042 8042 HOH HOH B . 
F 4 HOH 18 8043 8043 HOH HOH B . 
F 4 HOH 19 8045 8045 HOH HOH B . 
F 4 HOH 20 8046 8046 HOH HOH B . 
F 4 HOH 21 8047 8047 HOH HOH B . 
F 4 HOH 22 8048 8048 HOH HOH B . 
F 4 HOH 23 8049 8049 HOH HOH B . 
F 4 HOH 24 8050 8050 HOH HOH B . 
F 4 HOH 25 8052 8052 HOH HOH B . 
F 4 HOH 26 8053 8053 HOH HOH B . 
F 4 HOH 27 8055 8055 HOH HOH B . 
F 4 HOH 28 8061 8061 HOH HOH B . 
F 4 HOH 29 8062 8062 HOH HOH B . 
F 4 HOH 30 8063 8063 HOH HOH B . 
F 4 HOH 31 8064 8064 HOH HOH B . 
F 4 HOH 32 8066 8066 HOH HOH B . 
F 4 HOH 33 8069 8069 HOH HOH B . 
F 4 HOH 34 8070 8070 HOH HOH B . 
F 4 HOH 35 8072 8072 HOH HOH B . 
F 4 HOH 36 8073 8073 HOH HOH B . 
F 4 HOH 37 8074 8074 HOH HOH B . 
F 4 HOH 38 8076 8076 HOH HOH B . 
F 4 HOH 39 8077 8077 HOH HOH B . 
F 4 HOH 40 8079 8079 HOH HOH B . 
F 4 HOH 41 8080 8080 HOH HOH B . 
F 4 HOH 42 8081 8081 HOH HOH B . 
F 4 HOH 43 8082 8082 HOH HOH B . 
F 4 HOH 44 8083 8083 HOH HOH B . 
F 4 HOH 45 8089 8089 HOH HOH B . 
F 4 HOH 46 8092 8092 HOH HOH B . 
F 4 HOH 47 8093 8093 HOH HOH B . 
F 4 HOH 48 8098 8098 HOH HOH B . 
F 4 HOH 49 8099 8099 HOH HOH B . 
F 4 HOH 50 8103 8103 HOH HOH B . 
F 4 HOH 51 8104 8104 HOH HOH B . 
F 4 HOH 52 8106 8106 HOH HOH B . 
F 4 HOH 53 8107 8107 HOH HOH B . 
F 4 HOH 54 8108 8108 HOH HOH B . 
F 4 HOH 55 8112 4026 HOH MO6 B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SCALEPACK 'data scaling'   . ? 1 
X-PLOR    'model building' . ? 2 
SHELXL-97 refinement       . ? 3 
X-PLOR    phasing          . ? 4 
# 
_cell.entry_id           1M6F 
_cell.length_a           24.098 
_cell.length_b           39.821 
_cell.length_c           65.620 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1M6F 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
_exptl.entry_id          1M6F 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   40.25 
_exptl_crystal.density_Matthews      2.06 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            285 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.5 
_exptl_crystal_grow.pdbx_details    
;MGCL2 2UL OF 75MM, DNA DOUBLE-STRANDED 3UL OF 2MM, MPD 2UL OF 25%, DRUG 2UL OF 4.5MM, SODIUM CACODYLATE 40MM.  MPD IN RESERVOIR 700UL OF 50%., pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.details 
1 1 1 MGCL2 ? ? ? 
1 2 1 DNA   ? ? ? 
1 3 1 MPD   ? ? ? 
1 4 1 DRUG  ? ? ? 
1 5 2 MPD   ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           104 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IV' 
_diffrn_detector.pdbx_collection_date   2002-06-27 
_diffrn_detector.details                'Yale Focussing Mirrors' 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.5418 
# 
_reflns.entry_id                     1M6F 
_reflns.observed_criterion_sigma_F   1 
_reflns.observed_criterion_sigma_I   1 
_reflns.d_resolution_high            1.78 
_reflns.d_resolution_low             17.00 
_reflns.number_all                   ? 
_reflns.number_obs                   6040 
_reflns.percent_possible_obs         92.8 
_reflns.pdbx_Rmerge_I_obs            0.047 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              8.8 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.78 
_reflns_shell.d_res_low              1.84 
_reflns_shell.percent_possible_obs   90.6 
_reflns_shell.percent_possible_all   90.6 
_reflns_shell.Rmerge_I_obs           0.184 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1M6F 
_refine.ls_d_res_high                            1.78 
_refine.ls_d_res_low                             10.00 
_refine.pdbx_ls_sigma_F                          4 
_refine.pdbx_ls_sigma_I                          2 
_refine.ls_number_reflns_all                     5636 
_refine.ls_number_reflns_obs                     5477 
_refine.ls_number_reflns_R_free                  298 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          0.205 
_refine.ls_R_factor_R_work                       0.202 
_refine.ls_R_factor_R_free                       0.277 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_starting_model                      'DNA PART OF NDB ENTRY GDL009' 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         42 
_refine_hist.number_atoms_solvent             111 
_refine_hist.number_atoms_total               639 
_refine_hist.d_res_high                       1.78 
_refine_hist.d_res_low                        10.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d              0.008 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d             0.020 ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes   0.019 ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol 0.006 ? ? ? 'X-RAY DIFFRACTION' ? 
s_anti_bump_dis_restr 0.010 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    1M6F 
_pdbx_refine.R_factor_all_no_cutoff                      0.205 
_pdbx_refine.R_factor_obs_no_cutoff                      0.202 
_pdbx_refine.number_reflns_obs_no_cutoff                 5636 
_pdbx_refine.free_R_factor_no_cutoff                     0.277 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            ? 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     ? 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.202 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.199 
_pdbx_refine.number_reflns_obs_4sig_cutoff               5477 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.271 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          289 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   ? 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_database_PDB_matrix.entry_id          1M6F 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1M6F 
_struct.title                     
'Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1M6F 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Nucleic acids, minor groove binder, double helix, DNA-drug complex, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1M6F 
_struct_ref.pdbx_db_accession          1M6F 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1M6F A 1 ? 12 ? 1M6F 1001 ? 1012 ? 1001 1012 
2 1 1M6F B 1 ? 12 ? 1M6F 2013 ? 2024 ? 2013 2024 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 4026 A HOH 8113 1_555 ? ? ? ? ? ? ?            2.011 ? ? 
metalc2  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 4026 A HOH 8114 1_555 ? ? ? ? ? ? ?            2.031 ? ? 
metalc3  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 4026 A HOH 8115 1_555 ? ? ? ? ? ? ?            2.019 ? ? 
metalc4  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 4026 A HOH 8116 1_555 ? ? ? ? ? ? ?            2.023 ? ? 
metalc5  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 4026 A HOH 8117 1_555 ? ? ? ? ? ? ?            2.024 ? ? 
metalc6  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 4026 B HOH 8112 1_555 ? ? ? ? ? ? ?            2.019 ? ? 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG  12 N1 ? ? A DC 1001 B DG  2024 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG  12 O6 ? ? A DC 1001 B DG  2024 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG  12 N2 ? ? A DC 1001 B DG  2024 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC  11 N3 ? ? A DG 1002 B DC  2023 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC  11 O2 ? ? A DG 1002 B DC  2023 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC  11 N4 ? ? A DG 1002 B DC  2023 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG  10 N1 ? ? A DC 1003 B DG  2022 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG  10 O6 ? ? A DC 1003 B DG  2022 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG  10 N2 ? ? A DC 1003 B DG  2022 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC  9  N3 ? ? A DG 1004 B DC  2021 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC  9  O2 ? ? A DG 1004 B DC  2021 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC  9  N4 ? ? A DG 1004 B DC  2021 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT  8  N3 ? ? A DA 1005 B DT  2020 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT  8  O4 ? ? A DA 1005 B DT  2020 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT  7  N3 ? ? A DA 1006 B DT  2019 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT  7  O4 ? ? A DA 1006 B DT  2019 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA  6  N1 ? ? A DT 1007 B DA  2018 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA  6  N6 ? ? A DT 1007 B DA  2018 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA  5  N1 ? ? A DT 1008 B DA  2017 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA  5  N6 ? ? A DT 1008 B DA  2017 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG  4  N1 ? ? A DC 1009 B DG  2016 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG  4  O6 ? ? A DC 1009 B DG  2016 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG  4  N2 ? ? A DC 1009 B DG  2016 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC  3  N3 ? ? A DG 1010 B DC  2015 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC  3  O2 ? ? A DG 1010 B DC  2015 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC  3  N4 ? ? A DG 1010 B DC  2015 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG  2  N1 ? ? A DC 1011 B DG  2014 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG  2  O6 ? ? A DC 1011 B DG  2014 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG  2  N2 ? ? A DC 1011 B DG  2014 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC  1  N3 ? ? A DG 1012 B DC  2013 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC  1  O2 ? ? A DG 1012 B DC  2013 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC  1  N4 ? ? A DG 1012 B DC  2013 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O ? E HOH . ? A HOH 8113 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8114 ? 1_555 88.7  ? 
2  O ? E HOH . ? A HOH 8113 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8115 ? 1_555 176.6 ? 
3  O ? E HOH . ? A HOH 8114 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8115 ? 1_555 88.7  ? 
4  O ? E HOH . ? A HOH 8113 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8116 ? 1_555 90.6  ? 
5  O ? E HOH . ? A HOH 8114 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8116 ? 1_555 90.5  ? 
6  O ? E HOH . ? A HOH 8115 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8116 ? 1_555 91.5  ? 
7  O ? E HOH . ? A HOH 8113 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8117 ? 1_555 90.9  ? 
8  O ? E HOH . ? A HOH 8114 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8117 ? 1_555 91.4  ? 
9  O ? E HOH . ? A HOH 8115 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8117 ? 1_555 87.1  ? 
10 O ? E HOH . ? A HOH 8116 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? E HOH . ? A HOH 8117 ? 1_555 177.6 ? 
11 O ? E HOH . ? A HOH 8113 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? F HOH . ? B HOH 8112 ? 1_555 91.0  ? 
12 O ? E HOH . ? A HOH 8114 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? F HOH . ? B HOH 8112 ? 1_555 179.6 ? 
13 O ? E HOH . ? A HOH 8115 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? F HOH . ? B HOH 8112 ? 1_555 91.7  ? 
14 O ? E HOH . ? A HOH 8116 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? F HOH . ? B HOH 8112 ? 1_555 89.6  ? 
15 O ? E HOH . ? A HOH 8117 ? 1_555 MG ? C MG . ? A MG 4026 ? 1_555 O ? F HOH . ? B HOH 8112 ? 1_555 88.5  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B CGQ 3025 ? 14 'BINDING SITE FOR RESIDUE CGQ B 3025' 
AC2 Software A MG  4026 ? 6  'BINDING SITE FOR RESIDUE MG A 4026'  
1   ?        ? ?   ?    ? ?  ?                                     
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 14 DG  A 4 ? DG  A 1004 . ? 1_455 ? 
2  AC1 14 DA  A 6 ? DA  A 1006 . ? 1_555 ? 
3  AC1 14 DT  A 7 ? DT  A 1007 . ? 1_555 ? 
4  AC1 14 DT  A 8 ? DT  A 1008 . ? 1_555 ? 
5  AC1 14 DC  A 9 ? DC  A 1009 . ? 1_555 ? 
6  AC1 14 DA  B 6 ? DA  B 2018 . ? 1_555 ? 
7  AC1 14 DT  B 7 ? DT  B 2019 . ? 1_555 ? 
8  AC1 14 DT  B 8 ? DT  B 2020 . ? 1_555 ? 
9  AC1 14 DC  B 9 ? DC  B 2021 . ? 1_555 ? 
10 AC1 14 HOH F . ? HOH B 8017 . ? 1_555 ? 
11 AC1 14 HOH F . ? HOH B 8030 . ? 1_555 ? 
12 AC1 14 HOH F . ? HOH B 8033 . ? 1_555 ? 
13 AC1 14 HOH F . ? HOH B 8045 . ? 1_555 ? 
14 AC1 14 HOH F . ? HOH B 8099 . ? 1_555 ? 
15 AC2 6  HOH E . ? HOH A 8113 . ? 1_555 ? 
16 AC2 6  HOH E . ? HOH A 8114 . ? 1_555 ? 
17 AC2 6  HOH E . ? HOH A 8115 . ? 1_555 ? 
18 AC2 6  HOH E . ? HOH A 8116 . ? 1_555 ? 
19 AC2 6  HOH E . ? HOH A 8117 . ? 1_555 ? 
20 AC2 6  HOH F . ? HOH B 8112 . ? 1_555 ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? N1    A DC 1001 ? ? 101.14 108.00 -6.86  0.70 N 
2  1 "C3'" A DG 1002 ? ? "O3'" A DG 1002 ? ? P     A DC 1003 ? ? 126.96 119.70 7.26   1.20 Y 
3  1 "O4'" A DC 1003 ? ? "C1'" A DC 1003 ? ? N1    A DC 1003 ? ? 102.61 108.00 -5.39  0.70 N 
4  1 "O4'" A DA 1005 ? ? "C1'" A DA 1005 ? ? N9    A DA 1005 ? ? 100.06 108.00 -7.94  0.70 N 
5  1 "O4'" A DA 1006 ? ? "C1'" A DA 1006 ? ? N9    A DA 1006 ? ? 99.52  108.00 -8.48  0.70 N 
6  1 N1    A DT 1007 ? ? "C1'" A DT 1007 ? ? "C2'" A DT 1007 ? ? 123.96 114.30 9.66   1.40 N 
7  1 "O4'" A DT 1007 ? ? "C1'" A DT 1007 ? ? N1    A DT 1007 ? ? 98.73  108.00 -9.27  0.70 N 
8  1 N1    A DT 1008 ? ? "C1'" A DT 1008 ? ? "C2'" A DT 1008 ? ? 123.15 114.30 8.85   1.40 N 
9  1 "O4'" A DT 1008 ? ? "C1'" A DT 1008 ? ? N1    A DT 1008 ? ? 99.96  108.00 -8.04  0.70 N 
10 1 "O4'" A DC 1009 ? ? "C1'" A DC 1009 ? ? N1    A DC 1009 ? ? 101.97 108.00 -6.03  0.70 N 
11 1 "O4'" A DC 1011 ? ? "C1'" A DC 1011 ? ? N1    A DC 1011 ? ? 99.01  108.00 -8.99  0.70 N 
12 1 "O4'" B DC 2015 ? ? "C1'" B DC 2015 ? ? N1    B DC 2015 ? ? 100.82 108.00 -7.18  0.70 N 
13 1 "O4'" B DG 2016 ? ? "C1'" B DG 2016 ? ? N9    B DG 2016 ? ? 103.36 108.00 -4.64  0.70 N 
14 1 "O4'" B DA 2017 ? ? "C1'" B DA 2017 ? ? N9    B DA 2017 ? ? 96.79  108.00 -11.21 0.70 N 
15 1 N9    B DA 2018 ? ? "C1'" B DA 2018 ? ? "C2'" B DA 2018 ? ? 123.65 114.30 9.35   1.40 N 
16 1 "O4'" B DA 2018 ? ? "C1'" B DA 2018 ? ? N9    B DA 2018 ? ? 95.92  108.00 -12.08 0.70 N 
17 1 "O4'" B DT 2019 ? ? "C1'" B DT 2019 ? ? N1    B DT 2019 ? ? 103.23 108.00 -4.77  0.70 N 
18 1 N1    B DT 2020 ? ? "C1'" B DT 2020 ? ? "C2'" B DT 2020 ? ? 123.88 114.30 9.58   1.40 N 
19 1 "O4'" B DT 2020 ? ? "C1'" B DT 2020 ? ? N1    B DT 2020 ? ? 98.36  108.00 -9.64  0.70 N 
20 1 N3    B DT 2020 ? ? C4    B DT 2020 ? ? O4    B DT 2020 ? ? 123.91 119.90 4.01   0.60 N 
21 1 N1    B DC 2021 ? ? "C1'" B DC 2021 ? ? "C2'" B DC 2021 ? ? 122.84 114.30 8.54   1.40 N 
22 1 "O4'" B DC 2021 ? ? "C1'" B DC 2021 ? ? N1    B DC 2021 ? ? 96.65  108.00 -11.35 0.70 N 
23 1 "C3'" B DG 2022 ? ? "C2'" B DG 2022 ? ? "C1'" B DG 2022 ? ? 97.59  102.40 -4.81  0.80 N 
24 1 "O4'" B DG 2024 ? ? "C1'" B DG 2024 ? ? N9    B DG 2024 ? ? 103.70 108.00 -4.30  0.70 N 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MINOR GROOVE BINDER' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
CGQ C1     C  Y N 1   
CGQ C2     C  Y N 2   
CGQ C3     C  Y N 3   
CGQ C4     C  Y N 4   
CGQ C5     C  Y N 5   
CGQ C6     C  Y N 6   
CGQ C7     C  N N 7   
CGQ N8     N  N N 8   
CGQ C9     C  N N 9   
CGQ N10    N  N N 10  
CGQ N11    N  N N 11  
CGQ N12    N  N N 12  
CGQ C13    C  N N 13  
CGQ N15    N  N N 14  
CGQ N19    N  N N 15  
CGQ N20    N  N N 16  
CGQ C21    C  N N 17  
CGQ C22    C  Y N 18  
CGQ C23    C  Y N 19  
CGQ C24    C  Y N 20  
CGQ C25    C  Y N 21  
CGQ C26    C  Y N 22  
CGQ C27    C  Y N 23  
CGQ C28    C  N N 24  
CGQ N29    N  N N 25  
CGQ N30    N  N N 26  
CGQ H21    H  N N 27  
CGQ H41    H  N N 28  
CGQ H51    H  N N 29  
CGQ H61    H  N N 30  
CGQ H71    H  N N 31  
CGQ H101   H  N N 32  
CGQ H102   H  N N 33  
CGQ H111   H  N N 34  
CGQ H112   H  N N 35  
CGQ H121   H  N N 36  
CGQ H151   H  N N 37  
CGQ H152   H  N N 38  
CGQ H191   H  N N 39  
CGQ H211   H  N N 40  
CGQ H231   H  N N 41  
CGQ H241   H  N N 42  
CGQ H251   H  N N 43  
CGQ H271   H  N N 44  
CGQ H291   H  N N 45  
CGQ H292   H  N N 46  
CGQ H301   H  N N 47  
CGQ H302   H  N N 48  
DA  OP3    O  N N 49  
DA  P      P  N N 50  
DA  OP1    O  N N 51  
DA  OP2    O  N N 52  
DA  "O5'"  O  N N 53  
DA  "C5'"  C  N N 54  
DA  "C4'"  C  N R 55  
DA  "O4'"  O  N N 56  
DA  "C3'"  C  N S 57  
DA  "O3'"  O  N N 58  
DA  "C2'"  C  N N 59  
DA  "C1'"  C  N R 60  
DA  N9     N  Y N 61  
DA  C8     C  Y N 62  
DA  N7     N  Y N 63  
DA  C5     C  Y N 64  
DA  C6     C  Y N 65  
DA  N6     N  N N 66  
DA  N1     N  Y N 67  
DA  C2     C  Y N 68  
DA  N3     N  Y N 69  
DA  C4     C  Y N 70  
DA  HOP3   H  N N 71  
DA  HOP2   H  N N 72  
DA  "H5'"  H  N N 73  
DA  "H5''" H  N N 74  
DA  "H4'"  H  N N 75  
DA  "H3'"  H  N N 76  
DA  "HO3'" H  N N 77  
DA  "H2'"  H  N N 78  
DA  "H2''" H  N N 79  
DA  "H1'"  H  N N 80  
DA  H8     H  N N 81  
DA  H61    H  N N 82  
DA  H62    H  N N 83  
DA  H2     H  N N 84  
DC  OP3    O  N N 85  
DC  P      P  N N 86  
DC  OP1    O  N N 87  
DC  OP2    O  N N 88  
DC  "O5'"  O  N N 89  
DC  "C5'"  C  N N 90  
DC  "C4'"  C  N R 91  
DC  "O4'"  O  N N 92  
DC  "C3'"  C  N S 93  
DC  "O3'"  O  N N 94  
DC  "C2'"  C  N N 95  
DC  "C1'"  C  N R 96  
DC  N1     N  N N 97  
DC  C2     C  N N 98  
DC  O2     O  N N 99  
DC  N3     N  N N 100 
DC  C4     C  N N 101 
DC  N4     N  N N 102 
DC  C5     C  N N 103 
DC  C6     C  N N 104 
DC  HOP3   H  N N 105 
DC  HOP2   H  N N 106 
DC  "H5'"  H  N N 107 
DC  "H5''" H  N N 108 
DC  "H4'"  H  N N 109 
DC  "H3'"  H  N N 110 
DC  "HO3'" H  N N 111 
DC  "H2'"  H  N N 112 
DC  "H2''" H  N N 113 
DC  "H1'"  H  N N 114 
DC  H41    H  N N 115 
DC  H42    H  N N 116 
DC  H5     H  N N 117 
DC  H6     H  N N 118 
DG  OP3    O  N N 119 
DG  P      P  N N 120 
DG  OP1    O  N N 121 
DG  OP2    O  N N 122 
DG  "O5'"  O  N N 123 
DG  "C5'"  C  N N 124 
DG  "C4'"  C  N R 125 
DG  "O4'"  O  N N 126 
DG  "C3'"  C  N S 127 
DG  "O3'"  O  N N 128 
DG  "C2'"  C  N N 129 
DG  "C1'"  C  N R 130 
DG  N9     N  Y N 131 
DG  C8     C  Y N 132 
DG  N7     N  Y N 133 
DG  C5     C  Y N 134 
DG  C6     C  N N 135 
DG  O6     O  N N 136 
DG  N1     N  N N 137 
DG  C2     C  N N 138 
DG  N2     N  N N 139 
DG  N3     N  N N 140 
DG  C4     C  Y N 141 
DG  HOP3   H  N N 142 
DG  HOP2   H  N N 143 
DG  "H5'"  H  N N 144 
DG  "H5''" H  N N 145 
DG  "H4'"  H  N N 146 
DG  "H3'"  H  N N 147 
DG  "HO3'" H  N N 148 
DG  "H2'"  H  N N 149 
DG  "H2''" H  N N 150 
DG  "H1'"  H  N N 151 
DG  H8     H  N N 152 
DG  H1     H  N N 153 
DG  H21    H  N N 154 
DG  H22    H  N N 155 
DT  OP3    O  N N 156 
DT  P      P  N N 157 
DT  OP1    O  N N 158 
DT  OP2    O  N N 159 
DT  "O5'"  O  N N 160 
DT  "C5'"  C  N N 161 
DT  "C4'"  C  N R 162 
DT  "O4'"  O  N N 163 
DT  "C3'"  C  N S 164 
DT  "O3'"  O  N N 165 
DT  "C2'"  C  N N 166 
DT  "C1'"  C  N R 167 
DT  N1     N  N N 168 
DT  C2     C  N N 169 
DT  O2     O  N N 170 
DT  N3     N  N N 171 
DT  C4     C  N N 172 
DT  O4     O  N N 173 
DT  C5     C  N N 174 
DT  C7     C  N N 175 
DT  C6     C  N N 176 
DT  HOP3   H  N N 177 
DT  HOP2   H  N N 178 
DT  "H5'"  H  N N 179 
DT  "H5''" H  N N 180 
DT  "H4'"  H  N N 181 
DT  "H3'"  H  N N 182 
DT  "HO3'" H  N N 183 
DT  "H2'"  H  N N 184 
DT  "H2''" H  N N 185 
DT  "H1'"  H  N N 186 
DT  H3     H  N N 187 
DT  H71    H  N N 188 
DT  H72    H  N N 189 
DT  H73    H  N N 190 
DT  H6     H  N N 191 
HOH O      O  N N 192 
HOH H1     H  N N 193 
HOH H2     H  N N 194 
MG  MG     MG N N 195 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CGQ C1    C2     doub Y N 1   
CGQ C1    C6     sing Y N 2   
CGQ C1    C9     sing N N 3   
CGQ C2    C3     sing Y N 4   
CGQ C2    H21    sing N N 5   
CGQ C3    C4     doub Y N 6   
CGQ C3    C7     sing N N 7   
CGQ C4    C5     sing Y N 8   
CGQ C4    H41    sing N N 9   
CGQ C5    C6     doub Y N 10  
CGQ C5    H51    sing N N 11  
CGQ C6    H61    sing N N 12  
CGQ C7    N8     doub N E 13  
CGQ C7    H71    sing N N 14  
CGQ N8    N12    sing N N 15  
CGQ C9    N10    doub N N 16  
CGQ C9    N11    sing N N 17  
CGQ N10   H101   sing N N 18  
CGQ N10   H102   sing N N 19  
CGQ N11   H111   sing N N 20  
CGQ N11   H112   sing N N 21  
CGQ N12   C13    sing N N 22  
CGQ N12   H121   sing N N 23  
CGQ C13   N15    sing N N 24  
CGQ C13   N19    doub N E 25  
CGQ N15   H151   sing N N 26  
CGQ N15   H152   sing N N 27  
CGQ N19   N20    sing N N 28  
CGQ N19   H191   sing N N 29  
CGQ N20   C21    doub N N 30  
CGQ C21   C22    sing N N 31  
CGQ C21   H211   sing N N 32  
CGQ C22   C23    doub Y N 33  
CGQ C22   C27    sing Y N 34  
CGQ C23   C24    sing Y N 35  
CGQ C23   H231   sing N N 36  
CGQ C24   C25    doub Y N 37  
CGQ C24   H241   sing N N 38  
CGQ C25   C26    sing Y N 39  
CGQ C25   H251   sing N N 40  
CGQ C26   C27    doub Y N 41  
CGQ C26   C28    sing N N 42  
CGQ C27   H271   sing N N 43  
CGQ C28   N29    doub N N 44  
CGQ C28   N30    sing N N 45  
CGQ N29   H291   sing N N 46  
CGQ N29   H292   sing N N 47  
CGQ N30   H301   sing N N 48  
CGQ N30   H302   sing N N 49  
DA  OP3   P      sing N N 50  
DA  OP3   HOP3   sing N N 51  
DA  P     OP1    doub N N 52  
DA  P     OP2    sing N N 53  
DA  P     "O5'"  sing N N 54  
DA  OP2   HOP2   sing N N 55  
DA  "O5'" "C5'"  sing N N 56  
DA  "C5'" "C4'"  sing N N 57  
DA  "C5'" "H5'"  sing N N 58  
DA  "C5'" "H5''" sing N N 59  
DA  "C4'" "O4'"  sing N N 60  
DA  "C4'" "C3'"  sing N N 61  
DA  "C4'" "H4'"  sing N N 62  
DA  "O4'" "C1'"  sing N N 63  
DA  "C3'" "O3'"  sing N N 64  
DA  "C3'" "C2'"  sing N N 65  
DA  "C3'" "H3'"  sing N N 66  
DA  "O3'" "HO3'" sing N N 67  
DA  "C2'" "C1'"  sing N N 68  
DA  "C2'" "H2'"  sing N N 69  
DA  "C2'" "H2''" sing N N 70  
DA  "C1'" N9     sing N N 71  
DA  "C1'" "H1'"  sing N N 72  
DA  N9    C8     sing Y N 73  
DA  N9    C4     sing Y N 74  
DA  C8    N7     doub Y N 75  
DA  C8    H8     sing N N 76  
DA  N7    C5     sing Y N 77  
DA  C5    C6     sing Y N 78  
DA  C5    C4     doub Y N 79  
DA  C6    N6     sing N N 80  
DA  C6    N1     doub Y N 81  
DA  N6    H61    sing N N 82  
DA  N6    H62    sing N N 83  
DA  N1    C2     sing Y N 84  
DA  C2    N3     doub Y N 85  
DA  C2    H2     sing N N 86  
DA  N3    C4     sing Y N 87  
DC  OP3   P      sing N N 88  
DC  OP3   HOP3   sing N N 89  
DC  P     OP1    doub N N 90  
DC  P     OP2    sing N N 91  
DC  P     "O5'"  sing N N 92  
DC  OP2   HOP2   sing N N 93  
DC  "O5'" "C5'"  sing N N 94  
DC  "C5'" "C4'"  sing N N 95  
DC  "C5'" "H5'"  sing N N 96  
DC  "C5'" "H5''" sing N N 97  
DC  "C4'" "O4'"  sing N N 98  
DC  "C4'" "C3'"  sing N N 99  
DC  "C4'" "H4'"  sing N N 100 
DC  "O4'" "C1'"  sing N N 101 
DC  "C3'" "O3'"  sing N N 102 
DC  "C3'" "C2'"  sing N N 103 
DC  "C3'" "H3'"  sing N N 104 
DC  "O3'" "HO3'" sing N N 105 
DC  "C2'" "C1'"  sing N N 106 
DC  "C2'" "H2'"  sing N N 107 
DC  "C2'" "H2''" sing N N 108 
DC  "C1'" N1     sing N N 109 
DC  "C1'" "H1'"  sing N N 110 
DC  N1    C2     sing N N 111 
DC  N1    C6     sing N N 112 
DC  C2    O2     doub N N 113 
DC  C2    N3     sing N N 114 
DC  N3    C4     doub N N 115 
DC  C4    N4     sing N N 116 
DC  C4    C5     sing N N 117 
DC  N4    H41    sing N N 118 
DC  N4    H42    sing N N 119 
DC  C5    C6     doub N N 120 
DC  C5    H5     sing N N 121 
DC  C6    H6     sing N N 122 
DG  OP3   P      sing N N 123 
DG  OP3   HOP3   sing N N 124 
DG  P     OP1    doub N N 125 
DG  P     OP2    sing N N 126 
DG  P     "O5'"  sing N N 127 
DG  OP2   HOP2   sing N N 128 
DG  "O5'" "C5'"  sing N N 129 
DG  "C5'" "C4'"  sing N N 130 
DG  "C5'" "H5'"  sing N N 131 
DG  "C5'" "H5''" sing N N 132 
DG  "C4'" "O4'"  sing N N 133 
DG  "C4'" "C3'"  sing N N 134 
DG  "C4'" "H4'"  sing N N 135 
DG  "O4'" "C1'"  sing N N 136 
DG  "C3'" "O3'"  sing N N 137 
DG  "C3'" "C2'"  sing N N 138 
DG  "C3'" "H3'"  sing N N 139 
DG  "O3'" "HO3'" sing N N 140 
DG  "C2'" "C1'"  sing N N 141 
DG  "C2'" "H2'"  sing N N 142 
DG  "C2'" "H2''" sing N N 143 
DG  "C1'" N9     sing N N 144 
DG  "C1'" "H1'"  sing N N 145 
DG  N9    C8     sing Y N 146 
DG  N9    C4     sing Y N 147 
DG  C8    N7     doub Y N 148 
DG  C8    H8     sing N N 149 
DG  N7    C5     sing Y N 150 
DG  C5    C6     sing N N 151 
DG  C5    C4     doub Y N 152 
DG  C6    O6     doub N N 153 
DG  C6    N1     sing N N 154 
DG  N1    C2     sing N N 155 
DG  N1    H1     sing N N 156 
DG  C2    N2     sing N N 157 
DG  C2    N3     doub N N 158 
DG  N2    H21    sing N N 159 
DG  N2    H22    sing N N 160 
DG  N3    C4     sing N N 161 
DT  OP3   P      sing N N 162 
DT  OP3   HOP3   sing N N 163 
DT  P     OP1    doub N N 164 
DT  P     OP2    sing N N 165 
DT  P     "O5'"  sing N N 166 
DT  OP2   HOP2   sing N N 167 
DT  "O5'" "C5'"  sing N N 168 
DT  "C5'" "C4'"  sing N N 169 
DT  "C5'" "H5'"  sing N N 170 
DT  "C5'" "H5''" sing N N 171 
DT  "C4'" "O4'"  sing N N 172 
DT  "C4'" "C3'"  sing N N 173 
DT  "C4'" "H4'"  sing N N 174 
DT  "O4'" "C1'"  sing N N 175 
DT  "C3'" "O3'"  sing N N 176 
DT  "C3'" "C2'"  sing N N 177 
DT  "C3'" "H3'"  sing N N 178 
DT  "O3'" "HO3'" sing N N 179 
DT  "C2'" "C1'"  sing N N 180 
DT  "C2'" "H2'"  sing N N 181 
DT  "C2'" "H2''" sing N N 182 
DT  "C1'" N1     sing N N 183 
DT  "C1'" "H1'"  sing N N 184 
DT  N1    C2     sing N N 185 
DT  N1    C6     sing N N 186 
DT  C2    O2     doub N N 187 
DT  C2    N3     sing N N 188 
DT  N3    C4     sing N N 189 
DT  N3    H3     sing N N 190 
DT  C4    O4     doub N N 191 
DT  C4    C5     sing N N 192 
DT  C5    C7     sing N N 193 
DT  C5    C6     doub N N 194 
DT  C7    H71    sing N N 195 
DT  C7    H72    sing N N 196 
DT  C7    H73    sing N N 197 
DT  C6    H6     sing N N 198 
HOH O     H1     sing N N 199 
HOH O     H2     sing N N 200 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1M6F 'double helix'        
1M6F 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.289  -0.123 0.021  3.244  -21.070 1.610  1  A_DC1001:DG2024_B A 1001 ? B 2024 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.076 -0.124 0.050  -2.095 -3.969  -3.862 2  A_DG1002:DC2023_B A 1002 ? B 2023 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.179  -0.158 0.245  -2.376 -4.947  0.609  3  A_DC1003:DG2022_B A 1003 ? B 2022 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.365 -0.177 -0.043 10.292 -8.114  -2.845 4  A_DG1004:DC2021_B A 1004 ? B 2021 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 0.189  -0.195 -0.443 3.942  -20.661 4.985  5  A_DA1005:DT2020_B A 1005 ? B 2020 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.183  -0.189 -0.027 0.562  -13.458 6.953  6  A_DA1006:DT2019_B A 1006 ? B 2019 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 -0.136 -0.182 0.007  0.724  -14.353 10.298 7  A_DT1007:DA2018_B A 1007 ? B 2018 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 -0.109 -0.233 -0.304 -2.084 -18.398 5.279  8  A_DT1008:DA2017_B A 1008 ? B 2017 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.053  -0.177 -0.059 -8.031 -8.661  0.197  9  A_DC1009:DG2016_B A 1009 ? B 2016 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 -0.068 -0.242 0.266  7.225  -8.021  -1.245 10 A_DG1010:DC2015_B A 1010 ? B 2015 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.195  -0.174 0.371  7.457  -25.121 -3.478 11 A_DC1011:DG2014_B A 1011 ? B 2014 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.428 -0.226 -0.316 9.995  25.409  -2.811 12 A_DG1012:DC2013_B A 1012 ? B 2013 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.380 0.116  3.488 -0.017 6.516   32.538 -0.969 0.662  3.446 11.486  
0.030  33.167 1  AA_DC1001DG1002:DC2023DG2024_BB A 1001 ? B 2024 ? A 1002 ? B 2023 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.900  0.596  3.274 0.095  -1.771  42.658 0.996  -1.227 3.250 -2.433  
-0.130 42.693 2  AA_DG1002DC1003:DG2022DC2023_BB A 1002 ? B 2023 ? A 1003 ? B 2022 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.422 0.603  3.220 4.463  8.925   25.127 -0.996 2.048  3.127 19.558  
-9.780 27.007 3  AA_DC1003DG1004:DC2021DG2022_BB A 1003 ? B 2022 ? A 1004 ? B 2021 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 0.044  0.173  3.459 3.321  5.221   40.012 -0.371 0.331  3.447 7.575   
-4.819 40.468 4  AA_DG1004DA1005:DT2020DC2021_BB A 1004 ? B 2021 ? A 1005 ? B 2020 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 0.277  -0.230 3.219 -3.640 5.691   35.628 -1.149 -0.944 3.104 9.199   
5.884  36.242 5  AA_DA1005DA1006:DT2019DT2020_BB A 1005 ? B 2020 ? A 1006 ? B 2019 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.083  -0.467 3.197 -0.323 -0.810  28.279 -0.771 -0.242 3.208 -1.658  
0.661  28.292 6  AA_DA1006DT1007:DA2018DT2019_BB A 1006 ? B 2019 ? A 1007 ? B 2018 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.428 -0.028 3.217 3.088  1.033   37.479 -0.174 1.057  3.172 1.603   
-4.795 37.615 7  AA_DT1007DT1008:DA2017DA2018_BB A 1007 ? B 2018 ? A 1008 ? B 2017 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 -0.022 0.221  3.413 0.409  -0.818  41.797 0.399  0.075  3.408 -1.146  
-0.573 41.807 8  AA_DT1008DC1009:DG2016DA2017_BB A 1008 ? B 2017 ? A 1009 ? B 2016 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.369  1.063  3.211 -3.003 9.095   26.606 -0.002 -1.476 3.325 18.998  
6.272  28.248 9  AA_DC1009DG1010:DC2015DG2016_BB A 1009 ? B 2016 ? A 1010 ? B 2015 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.028 0.790  3.310 -5.556 -13.595 44.819 2.108  0.830  3.060 -17.290 
7.066  47.046 10 AA_DG1010DC1011:DG2014DC2015_BB A 1010 ? B 2015 ? A 1011 ? B 2014 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 1.450  0.583  3.574 5.717  -12.408 32.438 3.010  -1.460 3.338 -21.083 
-9.715 35.126 11 AA_DC1011DG1012:DC2013DG2014_BB A 1011 ? B 2014 ? A 1012 ? B 2013 ? 
# 
_pdbx_initial_refinement_model.accession_code   2DBE 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.details          'DNA PART OF NDB ENTRY GDL009' 
# 
_atom_sites.entry_id                    1M6F 
_atom_sites.fract_transf_matrix[1][1]   0.041497 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.025112 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015239 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_