data_1M6G # _entry.id 1M6G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1M6G pdb_00001m6g 10.2210/pdb1m6g/pdb NDB UD0021 ? ? RCSB RCSB016656 ? ? WWPDB D_1000016656 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-06 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_software.classification' 3 4 'Structure model' '_software.name' 4 4 'Structure model' '_software.version' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.value' 14 5 'Structure model' '_struct_conn.pdbx_dist_value' 15 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M6G _pdbx_database_status.recvd_initial_deposition_date 2002-07-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB UD0018 'UD0018 IS DNA double helix, four-way junction' unspecified NDB UD0015 'UD0015 IS DNA double helix, four-way junction' unspecified NDB UD0008 'UD0008 IS DNA double helix, four-way junction' unspecified NDB UD0006 'UD0006 IS DNA quadruple helix, mismatch' unspecified NDB DD0031 'DD0031 IS B-DNA double helix, modified' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thorpe, J.H.' 1 'Gale, B.C.' 2 'Teixeira, S.C.M.' 3 'Cardin, C.J.' 4 # _citation.id primary _citation.title ;Conformational and hydration effects of site-selective sodium, calcium and strontium ion binding to the DNA Holliday junction structure d(TCGGTACCGA)(4) ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 327 _citation.page_first 97 _citation.page_last 109 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12614611 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(03)00088-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thorpe, J.H.' 1 ? primary 'Gale, B.C.' 2 ? primary 'Teixeira, S.C.M.' 3 ? primary 'Cardin, C.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'" 3045.005 2 ? ? ? 'SECTION OF HOLLIDAY JUNCTION' 2 non-polymer syn 'STRONTIUM ION' 87.620 5 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGTACCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DA 10 10 10 DA A A . n B 1 1 DT 1 11 11 DT T B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DA 10 20 20 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR 1 23 23 SR SR A . D 2 SR 1 24 24 SR SR A . E 2 SR 1 21 21 SR SR B . F 2 SR 1 22 22 SR SR B . G 2 SR 1 25 25 SR SR B . H 3 HOH 1 41 41 HOH HOH A . H 3 HOH 2 45 45 HOH HOH A . H 3 HOH 3 46 46 HOH HOH A . H 3 HOH 4 48 48 HOH HOH A . H 3 HOH 5 53 53 HOH HOH A . H 3 HOH 6 54 54 HOH HOH A . H 3 HOH 7 55 55 HOH HOH A . H 3 HOH 8 56 56 HOH HOH A . H 3 HOH 9 57 57 HOH HOH A . H 3 HOH 10 58 58 HOH HOH A . H 3 HOH 11 59 59 HOH HOH A . H 3 HOH 12 60 60 HOH HOH A . H 3 HOH 13 61 61 HOH HOH A . H 3 HOH 14 62 62 HOH HOH A . H 3 HOH 15 64 64 HOH HOH A . H 3 HOH 16 65 65 HOH HOH A . H 3 HOH 17 66 66 HOH HOH A . H 3 HOH 18 79 79 HOH HOH A . H 3 HOH 19 80 80 HOH HOH A . H 3 HOH 20 81 81 HOH HOH A . H 3 HOH 21 82 82 HOH HOH A . H 3 HOH 22 87 87 HOH HOH A . H 3 HOH 23 94 94 HOH HOH A . H 3 HOH 24 97 97 HOH HOH A . H 3 HOH 25 98 98 HOH HOH A . H 3 HOH 26 99 99 HOH HOH A . H 3 HOH 27 100 100 HOH HOH A . H 3 HOH 28 101 101 HOH HOH A . H 3 HOH 29 108 108 HOH HOH A . H 3 HOH 30 110 110 HOH HOH A . H 3 HOH 31 112 112 HOH HOH A . H 3 HOH 32 114 114 HOH HOH A . H 3 HOH 33 116 116 HOH HOH A . H 3 HOH 34 117 117 HOH HOH A . H 3 HOH 35 118 118 HOH HOH A . H 3 HOH 36 119 119 HOH HOH A . H 3 HOH 37 120 120 HOH HOH A . H 3 HOH 38 121 121 HOH HOH A . H 3 HOH 39 122 122 HOH HOH A . H 3 HOH 40 133 133 HOH HOH A . H 3 HOH 41 137 137 HOH HOH A . H 3 HOH 42 139 139 HOH HOH A . H 3 HOH 43 141 141 HOH HOH A . H 3 HOH 44 143 143 HOH HOH A . H 3 HOH 45 144 144 HOH HOH A . H 3 HOH 46 145 145 HOH HOH A . H 3 HOH 47 146 146 HOH HOH A . I 3 HOH 1 26 26 HOH HOH B . I 3 HOH 2 27 27 HOH HOH B . I 3 HOH 3 28 28 HOH HOH B . I 3 HOH 4 29 29 HOH HOH B . I 3 HOH 5 30 30 HOH HOH B . I 3 HOH 6 31 31 HOH HOH B . I 3 HOH 7 32 32 HOH HOH B . I 3 HOH 8 33 33 HOH HOH B . I 3 HOH 9 34 34 HOH HOH B . I 3 HOH 10 35 35 HOH HOH B . I 3 HOH 11 36 36 HOH HOH B . I 3 HOH 12 37 37 HOH HOH B . I 3 HOH 13 38 38 HOH HOH B . I 3 HOH 14 39 39 HOH HOH B . I 3 HOH 15 40 40 HOH HOH B . I 3 HOH 16 42 42 HOH HOH B . I 3 HOH 17 43 43 HOH HOH B . I 3 HOH 18 44 44 HOH HOH B . I 3 HOH 19 47 47 HOH HOH B . I 3 HOH 20 49 49 HOH HOH B . I 3 HOH 21 50 50 HOH HOH B . I 3 HOH 22 51 51 HOH HOH B . I 3 HOH 23 52 52 HOH HOH B . I 3 HOH 24 67 67 HOH HOH B . I 3 HOH 25 68 68 HOH HOH B . I 3 HOH 26 69 69 HOH HOH B . I 3 HOH 27 71 71 HOH HOH B . I 3 HOH 28 73 73 HOH HOH B . I 3 HOH 29 74 74 HOH HOH B . I 3 HOH 30 75 75 HOH HOH B . I 3 HOH 31 78 78 HOH HOH B . I 3 HOH 32 83 83 HOH HOH B . I 3 HOH 33 84 84 HOH HOH B . I 3 HOH 34 85 85 HOH HOH B . I 3 HOH 35 86 86 HOH HOH B . I 3 HOH 36 88 88 HOH HOH B . I 3 HOH 37 89 89 HOH HOH B . I 3 HOH 38 91 91 HOH HOH B . I 3 HOH 39 92 92 HOH HOH B . I 3 HOH 40 93 93 HOH HOH B . I 3 HOH 41 95 95 HOH HOH B . I 3 HOH 42 102 102 HOH HOH B . I 3 HOH 43 104 104 HOH HOH B . I 3 HOH 44 105 105 HOH HOH B . I 3 HOH 45 106 106 HOH HOH B . I 3 HOH 46 109 109 HOH HOH B . I 3 HOH 47 111 111 HOH HOH B . I 3 HOH 48 113 113 HOH HOH B . I 3 HOH 49 115 115 HOH HOH B . I 3 HOH 50 123 123 HOH HOH B . I 3 HOH 51 124 124 HOH HOH B . I 3 HOH 52 125 125 HOH HOH B . I 3 HOH 53 126 126 HOH HOH B . I 3 HOH 54 129 129 HOH HOH B . I 3 HOH 55 130 130 HOH HOH B . I 3 HOH 56 131 131 HOH HOH B . I 3 HOH 57 132 132 HOH HOH B . I 3 HOH 58 135 135 HOH HOH B . I 3 HOH 59 140 140 HOH HOH B . I 3 HOH 60 142 142 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 SCALA 'data scaling' . ? 2 XTALVIEW refinement . ? 3 MOSFLM 'data reduction' . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _cell.entry_id 1M6G _cell.length_a 64.302 _cell.length_b 25.034 _cell.length_c 36.778 _cell.angle_alpha 90.00 _cell.angle_beta 110.04 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M6G _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1M6G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.86 _exptl_crystal.density_Matthews 2.19 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'cacodylate, strontium chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 cacodylate ? ? ? 1 2 1 SrCl2 ? ? ? 1 3 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-05-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.811 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.811 # _reflns.entry_id 1M6G _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.649 _reflns.d_resolution_low 34.503 _reflns.number_all ? _reflns.number_obs 6703 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.2957 _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 18.9 _reflns.pdbx_redundancy 5.41 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.652 _reflns_shell.d_res_low 1.695 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.332 _reflns_shell.pdbx_Rsym_value 0.148 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 408 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1M6G _refine.ls_number_reflns_obs 6621 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 34.503 _refine.ls_d_res_high 1.652 _refine.ls_percent_reflns_obs 97.64 _refine.ls_R_factor_obs 0.2148 _refine.ls_R_factor_all 0.2185 _refine.ls_R_factor_R_work 0.21486 _refine.ls_R_factor_R_free 0.29566 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 316 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 18.900 _refine.aniso_B[1][1] -1.67 _refine.aniso_B[2][2] 2.32 _refine.aniso_B[3][3] -0.90 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.35 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_B 2.690 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML 0.092 _refine.pdbx_overall_ESU_R 0.203 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 516 _refine_hist.d_res_high 1.652 _refine_hist.d_res_low 34.503 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 452 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 192 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.868 3.000 ? 694 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.714 3.000 ? 484 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 60 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.019 0.020 ? 210 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 4 'X-RAY DIFFRACTION' ? r_nbd_refined 0.147 0.200 ? 52 'X-RAY DIFFRACTION' ? r_nbd_other 0.213 0.200 ? 194 'X-RAY DIFFRACTION' ? r_nbtor_other 0.109 0.200 ? 103 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.163 0.200 ? 55 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.048 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.339 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.123 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.540 3.000 ? 452 'X-RAY DIFFRACTION' ? r_scangle_it 3.308 4.500 ? 694 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.713 2.000 ? 452 'X-RAY DIFFRACTION' ? r_sphericity_free 4.620 2.000 ? 112 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.435 2.000 ? 404 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.652 _refine_ls_shell.d_res_low 1.695 _refine_ls_shell.number_reflns_R_work 408 _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1M6G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1M6G _struct.title 'Structural Characterisation of the Holliday Junction TCGGTACCGA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M6G _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Holliday Junction, Strontium derivative, Four-way junction, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1M6G _struct_ref.pdbx_db_accession 1M6G _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1M6G A 1 ? 10 ? 1M6G 1 ? 10 ? 1 10 2 1 1M6G B 1 ? 10 ? 1M6G 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 23 A HOH 41 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 23 B HOH 38 1_555 ? ? ? ? ? ? ? 2.609 ? ? metalc3 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 23 B HOH 39 1_555 ? ? ? ? ? ? ? 2.718 ? ? metalc4 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 23 B HOH 40 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc5 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 23 B HOH 42 1_555 ? ? ? ? ? ? ? 2.609 ? ? metalc6 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 23 B HOH 125 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc7 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 24 A HOH 45 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc8 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 24 A HOH 46 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc9 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 24 A HOH 48 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc10 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 24 A HOH 87 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc11 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 24 B HOH 43 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc12 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 24 B HOH 44 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc13 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 24 B HOH 47 1_555 ? ? ? ? ? ? ? 3.044 ? ? metalc14 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 26 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc15 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 27 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc16 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 28 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc17 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 29 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc18 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 30 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc19 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 31 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc20 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 32 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc21 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 21 B HOH 33 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc22 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 34 1_555 ? ? ? ? ? ? ? 2.641 ? ? metalc23 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 35 1_555 ? ? ? ? ? ? ? 2.580 ? ? metalc24 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 36 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc25 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 37 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc26 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 86 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc27 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 123 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc28 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 22 B HOH 124 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc29 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 25 B HOH 49 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc30 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 25 B HOH 50 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc31 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 25 B HOH 51 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc32 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 25 B HOH 52 1_555 ? ? ? ? ? ? ? 2.626 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 41 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 38 ? 1_555 143.8 ? 2 O ? H HOH . ? A HOH 41 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 39 ? 1_555 132.4 ? 3 O ? I HOH . ? B HOH 38 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 39 ? 1_555 74.0 ? 4 O ? H HOH . ? A HOH 41 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 40 ? 1_555 78.7 ? 5 O ? I HOH . ? B HOH 38 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 40 ? 1_555 82.5 ? 6 O ? I HOH . ? B HOH 39 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 40 ? 1_555 82.1 ? 7 O ? H HOH . ? A HOH 41 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 79.6 ? 8 O ? I HOH . ? B HOH 38 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 71.1 ? 9 O ? I HOH . ? B HOH 39 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 145.1 ? 10 O ? I HOH . ? B HOH 40 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 93.9 ? 11 O ? H HOH . ? A HOH 41 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 68.1 ? 12 O ? I HOH . ? B HOH 38 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 131.8 ? 13 O ? I HOH . ? B HOH 39 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 64.3 ? 14 O ? I HOH . ? B HOH 40 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 69.1 ? 15 O ? I HOH . ? B HOH 42 ? 1_555 SR ? C SR . ? A SR 23 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 145.7 ? 16 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 46 ? 1_555 135.2 ? 17 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 48 ? 1_555 67.5 ? 18 O ? H HOH . ? A HOH 46 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 48 ? 1_555 67.8 ? 19 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 59.9 ? 20 O ? H HOH . ? A HOH 46 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 153.9 ? 21 O ? H HOH . ? A HOH 48 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 119.7 ? 22 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 43 ? 1_555 121.2 ? 23 O ? H HOH . ? A HOH 46 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 43 ? 1_555 86.8 ? 24 O ? H HOH . ? A HOH 48 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 43 ? 1_555 130.3 ? 25 O ? H HOH . ? A HOH 87 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 43 ? 1_555 102.1 ? 26 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 44 ? 1_555 135.4 ? 27 O ? H HOH . ? A HOH 46 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 44 ? 1_555 83.7 ? 28 O ? H HOH . ? A HOH 48 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 44 ? 1_555 139.9 ? 29 O ? H HOH . ? A HOH 87 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 44 ? 1_555 76.0 ? 30 O ? I HOH . ? B HOH 43 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 44 ? 1_555 72.2 ? 31 O ? H HOH . ? A HOH 45 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 83.6 ? 32 O ? H HOH . ? A HOH 46 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 85.5 ? 33 O ? H HOH . ? A HOH 48 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 78.8 ? 34 O ? H HOH . ? A HOH 87 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 120.0 ? 35 O ? I HOH . ? B HOH 43 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 56.4 ? 36 O ? I HOH . ? B HOH 44 ? 1_555 SR ? D SR . ? A SR 24 ? 1_555 O ? I HOH . ? B HOH 47 ? 1_555 127.9 ? 37 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 27 ? 1_555 81.4 ? 38 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 28 ? 1_555 77.1 ? 39 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 28 ? 1_555 73.3 ? 40 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 29 ? 1_555 139.5 ? 41 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 29 ? 1_555 70.6 ? 42 O ? I HOH . ? B HOH 28 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 29 ? 1_555 67.3 ? 43 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 30 ? 1_555 82.8 ? 44 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 30 ? 1_555 149.7 ? 45 O ? I HOH . ? B HOH 28 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 30 ? 1_555 78.1 ? 46 O ? I HOH . ? B HOH 29 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 30 ? 1_555 107.2 ? 47 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 31 ? 1_555 77.4 ? 48 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 31 ? 1_555 128.3 ? 49 O ? I HOH . ? B HOH 28 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 31 ? 1_555 142.7 ? 50 O ? I HOH . ? B HOH 29 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 31 ? 1_555 143.2 ? 51 O ? I HOH . ? B HOH 30 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 31 ? 1_555 72.2 ? 52 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 145.0 ? 53 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 132.3 ? 54 O ? I HOH . ? B HOH 28 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 117.1 ? 55 O ? I HOH . ? B HOH 29 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 72.2 ? 56 O ? I HOH . ? B HOH 30 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 70.5 ? 57 O ? I HOH . ? B HOH 31 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 32 ? 1_555 73.3 ? 58 O ? I HOH . ? B HOH 26 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 98.5 ? 59 O ? I HOH . ? B HOH 27 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 64.6 ? 60 O ? I HOH . ? B HOH 28 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 137.9 ? 61 O ? I HOH . ? B HOH 29 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 95.3 ? 62 O ? I HOH . ? B HOH 30 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 143.7 ? 63 O ? I HOH . ? B HOH 31 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 72.8 ? 64 O ? I HOH . ? B HOH 32 ? 1_555 SR ? E SR . ? B SR 21 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 90.6 ? 65 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 35 ? 1_555 80.2 ? 66 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 36 ? 1_555 155.7 ? 67 O ? I HOH . ? B HOH 35 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 36 ? 1_555 79.8 ? 68 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 37 ? 1_555 63.1 ? 69 O ? I HOH . ? B HOH 35 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 37 ? 1_555 133.2 ? 70 O ? I HOH . ? B HOH 36 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 37 ? 1_555 141.1 ? 71 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 86 ? 1_555 82.5 ? 72 O ? I HOH . ? B HOH 35 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 86 ? 1_555 74.5 ? 73 O ? I HOH . ? B HOH 36 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 86 ? 1_555 78.9 ? 74 O ? I HOH . ? B HOH 37 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 86 ? 1_555 124.2 ? 75 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 123 ? 1_555 102.2 ? 76 O ? I HOH . ? B HOH 35 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 123 ? 1_555 146.6 ? 77 O ? I HOH . ? B HOH 36 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 123 ? 1_555 87.2 ? 78 O ? I HOH . ? B HOH 37 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 123 ? 1_555 73.3 ? 79 O ? I HOH . ? B HOH 86 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 123 ? 1_555 72.9 ? 80 O ? I HOH . ? B HOH 34 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 91.4 ? 81 O ? I HOH . ? B HOH 35 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 69.0 ? 82 O ? I HOH . ? B HOH 36 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 94.2 ? 83 O ? I HOH . ? B HOH 37 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 83.1 ? 84 O ? I HOH . ? B HOH 86 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 143.4 ? 85 O ? I HOH . ? B HOH 123 ? 1_555 SR ? F SR . ? B SR 22 ? 1_555 O ? I HOH . ? B HOH 124 ? 1_555 143.2 ? 86 O ? I HOH . ? B HOH 49 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 143.1 ? 87 O ? I HOH . ? B HOH 49 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 105.2 ? 88 O ? I HOH . ? B HOH 50 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 109.5 ? 89 O ? I HOH . ? B HOH 49 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 52 ? 1_555 88.4 ? 90 O ? I HOH . ? B HOH 50 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 52 ? 1_555 114.5 ? 91 O ? I HOH . ? B HOH 51 ? 1_555 SR ? G SR . ? B SR 25 ? 1_555 O ? I HOH . ? B HOH 52 ? 1_555 70.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SR 21 ? 8 'BINDING SITE FOR RESIDUE SR B 21' AC2 Software B SR 22 ? 7 'BINDING SITE FOR RESIDUE SR B 22' AC3 Software A SR 23 ? 6 'BINDING SITE FOR RESIDUE SR A 23' AC4 Software A SR 24 ? 7 'BINDING SITE FOR RESIDUE SR A 24' AC5 Software B SR 25 ? 4 'BINDING SITE FOR RESIDUE SR B 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH I . ? HOH B 26 . ? 1_555 ? 2 AC1 8 HOH I . ? HOH B 27 . ? 1_555 ? 3 AC1 8 HOH I . ? HOH B 28 . ? 1_555 ? 4 AC1 8 HOH I . ? HOH B 29 . ? 1_555 ? 5 AC1 8 HOH I . ? HOH B 30 . ? 1_555 ? 6 AC1 8 HOH I . ? HOH B 31 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH B 32 . ? 1_555 ? 8 AC1 8 HOH I . ? HOH B 33 . ? 1_555 ? 9 AC2 7 HOH I . ? HOH B 34 . ? 1_555 ? 10 AC2 7 HOH I . ? HOH B 35 . ? 1_555 ? 11 AC2 7 HOH I . ? HOH B 36 . ? 1_555 ? 12 AC2 7 HOH I . ? HOH B 37 . ? 1_555 ? 13 AC2 7 HOH I . ? HOH B 86 . ? 1_555 ? 14 AC2 7 HOH I . ? HOH B 123 . ? 1_555 ? 15 AC2 7 HOH I . ? HOH B 124 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 41 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH B 38 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH B 39 . ? 1_555 ? 19 AC3 6 HOH I . ? HOH B 40 . ? 1_555 ? 20 AC3 6 HOH I . ? HOH B 42 . ? 1_555 ? 21 AC3 6 HOH I . ? HOH B 125 . ? 1_555 ? 22 AC4 7 HOH H . ? HOH A 45 . ? 1_555 ? 23 AC4 7 HOH H . ? HOH A 46 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH A 48 . ? 1_555 ? 25 AC4 7 HOH H . ? HOH A 87 . ? 1_555 ? 26 AC4 7 HOH I . ? HOH B 43 . ? 1_555 ? 27 AC4 7 HOH I . ? HOH B 44 . ? 1_555 ? 28 AC4 7 HOH I . ? HOH B 47 . ? 1_555 ? 29 AC5 4 HOH I . ? HOH B 49 . ? 1_555 ? 30 AC5 4 HOH I . ? HOH B 50 . ? 1_555 ? 31 AC5 4 HOH I . ? HOH B 51 . ? 1_555 ? 32 AC5 4 HOH I . ? HOH B 52 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" A DA 10 ? ? "C3'" A DA 10 ? ? 1.379 1.419 -0.040 0.006 N 3 1 "O3'" B DA 16 ? ? "C3'" B DA 16 ? ? 1.371 1.419 -0.048 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DC 2 ? ? C5 A DC 2 ? ? C6 A DC 2 ? ? 113.59 117.40 -3.81 0.50 N 2 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 99.96 105.90 -5.94 0.80 N 3 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.20 108.30 3.90 0.30 N 4 1 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.17 122.30 -4.13 0.60 N 5 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 126.16 129.30 -3.14 0.50 N 6 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 102.49 105.80 -3.31 0.40 N 7 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 123.66 118.60 5.06 0.60 N 8 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.17 108.30 3.87 0.30 N 9 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.66 108.30 2.36 0.30 N 10 1 C4 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 123.60 119.00 4.60 0.60 N 11 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 119.18 122.90 -3.72 0.60 N 12 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? "C2'" B DC 12 ? ? 100.53 105.90 -5.37 0.80 N 13 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.33 119.90 4.43 0.60 N 14 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 102.99 108.00 -5.01 0.70 N 15 1 N3 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 116.98 122.30 -5.32 0.60 N 16 1 N3 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 124.16 119.90 4.26 0.60 N 17 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.70 108.30 2.40 0.30 N 18 1 "C4'" B DC 17 ? ? "C3'" B DC 17 ? ? "C2'" B DC 17 ? ? 110.75 103.10 7.65 0.90 N 19 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? "C2'" B DC 17 ? ? 113.32 106.80 6.52 0.50 N 20 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 116.64 108.30 8.34 0.30 N 21 1 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DC 18 ? ? 129.58 119.70 9.88 1.20 Y 22 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 103.12 108.00 -4.88 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 SR SR SR N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1M6G _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 0.105 -0.093 0.235 -3.996 -16.171 5.256 1 A_DT1:DA20_B A 1 ? B 20 ? 20 1 1 A DC 2 1_555 B DG 9 1_555 0.047 -0.083 0.182 0.904 -2.388 -2.495 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.319 -0.256 0.241 2.121 -3.593 -0.960 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.101 -0.242 0.328 -0.399 -16.140 -0.580 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.269 -0.101 0.061 -2.273 -10.811 -0.728 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.715 0.109 0.027 1.808 -14.991 -2.644 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DC 2 1_555 B DG 9 1_555 0.089 2.351 3.398 3.619 2.493 40.366 3.094 0.299 3.526 3.600 -5.226 40.595 1 AA_DT1DC2:DG19DA20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.118 2.806 3.307 0.286 -2.131 37.780 4.598 0.218 3.149 -3.289 -0.441 37.839 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.017 2.189 3.555 -4.680 3.230 42.851 2.621 -0.532 3.681 4.397 6.372 43.209 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.573 -0.341 3.367 2.792 -0.713 26.203 -0.553 2.020 3.297 -1.566 -6.135 26.359 4 AA_DG4DT5:DA16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.714 1.389 3.295 -0.823 -1.031 43.503 1.973 0.883 3.275 -1.391 1.110 43.522 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? # _atom_sites.entry_id 1M6G _atom_sites.fract_transf_matrix[1][1] 0.015552 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005673 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039946 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028943 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_