HEADER ELECTRON TRANSPORT 18-JUL-02 1M70 TITLE CRYSTAL STRUCTURE OF OXIDIZED RECOMBINANT CYTOCHROME C4 FROM TITLE 2 PSEUDOMONAS STUTZERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 3 ORGANISM_TAXID: 316; SOURCE 4 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: PAW340; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNM185 KEYWDS ELECTRON TRANSPORT, DIHEME PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.NOERGAARD,P.HARRIS,S.LARSEN,H.E.M.CHRISTENSEN REVDAT 5 25-OCT-23 1M70 1 REMARK LINK REVDAT 4 23-MAY-18 1M70 1 REMARK REVDAT 3 13-JUL-11 1M70 1 VERSN REVDAT 2 24-FEB-09 1M70 1 VERSN REVDAT 1 16-SEP-03 1M70 0 JRNL AUTH A.NOERGAARD,P.HARRIS,S.LARSEN,H.E.M.CHRISTENSEN JRNL TITL STRUCTURAL COMPARISON OF RECOMBINANT PSEUDOMONAS STUTZERI JRNL TITL 2 CYTOCHROME C4 IN TWO OXIDATION STATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.KADZIOLA,S.LARSEN,H.M.CHRISTENSEN,J.-J.KARLSSON,J.ULSTRUP REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 INVESTIGATIONS OF CYTOCHROME C4 FROM PSEUDOMONAS STUTZERI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 1071 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444995006652 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.KADZIOLA,S.LARSEN REMARK 1 TITL CRYSTAL STRUCTURE OF THE DIHAEM CYTOCHROME C4 FROM REMARK 1 TITL 2 PSEUDOMONAS STUTZERI DETERMINED AT 2.2 A RESOLUTION REMARK 1 REF STRUCTURE V. 5 203 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(97)00179-2 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.H.ANDERSEN,H.E.M.CHRISTENSEN,G.IVERSEN,A.NOERGAARD, REMARK 1 AUTH 2 C.SCHARNAGL,M.H.THUESEN,J.ULSTRUP REMARK 1 TITL CYTOCHROME C4 REMARK 1 REF HANDBOOK OF METALLOPROTEINS V. 1 100 2001 REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.155 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.155 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 8596 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 171606 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.151 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.151 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 8048 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 160116 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 350 REMARK 3 SOLVENT ATOMS : 819 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 6688.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 5368.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 10 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 60529 REMARK 3 NUMBER OF RESTRAINTS : 86801 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.028 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.453 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.027 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.063 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.070 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.028 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.048 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.077 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT. RIDING H-ATOMS REMARK 3 INTRODUCED. REMARK 4 REMARK 4 1M70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-00; 26-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 120; 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; MAX II REMARK 200 BEAMLINE : NULL; I711 REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179; 1.03260 REMARK 200 MONOCHROMATOR : GRAPHITE; SI(111) CRYSTAL REMARK 200 OPTICS : OSMIC MIRRORS; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 175219 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ETP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE PH 5.6, 30%(W/V) PEG 4000, PH 6.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.82000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 102 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG A 108 CG - CD - NE ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR B 94 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 108 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 GLU B 155 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 168 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 168 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU C 65 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG C 108 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP C 113 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP C 113 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP C 131 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP C 131 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP C 163 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG C 168 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR D 94 CB - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG D 108 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP D 113 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP D 163 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 124 150.14 81.96 REMARK 500 ALA B 124 150.91 83.49 REMARK 500 ASN C 23 35.47 -96.10 REMARK 500 SER C 24 106.15 -6.33 REMARK 500 SER C 24 106.15 -46.84 REMARK 500 ALA C 124 147.11 84.75 REMARK 500 ALA D 124 149.17 82.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 199 NA 91.7 REMARK 620 3 HEC A 199 NB 89.3 91.1 REMARK 620 4 HEC A 199 NC 88.7 179.1 89.8 REMARK 620 5 HEC A 199 ND 93.1 89.7 177.5 89.5 REMARK 620 6 MET A 66 SD 177.5 85.8 91.1 93.8 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 123 NE2 REMARK 620 2 HEC A 200 NA 90.6 REMARK 620 3 HEC A 200 NB 89.6 90.0 REMARK 620 4 HEC A 200 NC 89.4 179.3 89.3 REMARK 620 5 HEC A 200 ND 91.4 89.3 178.7 91.5 REMARK 620 6 MET A 167 SD 176.2 92.0 87.6 87.9 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 199 NA 90.4 REMARK 620 3 HEC B 199 NB 88.7 90.8 REMARK 620 4 HEC B 199 NC 88.6 178.7 89.9 REMARK 620 5 HEC B 199 ND 93.0 89.2 178.3 90.1 REMARK 620 6 MET B 66 SD 176.9 86.6 91.5 94.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 123 NE2 REMARK 620 2 HEC B 200 NA 90.9 REMARK 620 3 HEC B 200 NB 89.2 90.4 REMARK 620 4 HEC B 200 NC 88.7 179.5 89.3 REMARK 620 5 HEC B 200 ND 91.5 88.7 178.9 91.6 REMARK 620 6 MET B 167 SD 174.6 93.3 87.3 87.1 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 18 NE2 REMARK 620 2 HEC C 199 NA 89.6 REMARK 620 3 HEC C 199 NB 88.6 90.4 REMARK 620 4 HEC C 199 NC 87.6 177.2 90.0 REMARK 620 5 HEC C 199 ND 90.6 89.4 179.2 90.1 REMARK 620 6 MET C 66 SD 176.9 87.7 92.9 95.0 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 123 NE2 REMARK 620 2 HEC C 200 NA 89.8 REMARK 620 3 HEC C 200 NB 88.8 90.3 REMARK 620 4 HEC C 200 NC 88.7 178.5 89.1 REMARK 620 5 HEC C 200 ND 91.2 89.4 179.8 91.1 REMARK 620 6 MET C 167 SD 175.8 93.4 88.4 88.0 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 18 NE2 REMARK 620 2 HEC D 199 NA 90.3 REMARK 620 3 HEC D 199 NB 88.2 91.1 REMARK 620 4 HEC D 199 NC 87.1 177.4 89.4 REMARK 620 5 HEC D 199 ND 90.6 90.0 178.4 89.5 REMARK 620 6 MET D 66 SD 177.4 88.0 93.7 94.5 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 123 NE2 REMARK 620 2 HEC D 200 NA 89.7 REMARK 620 3 HEC D 200 NB 88.9 90.1 REMARK 620 4 HEC D 200 NC 88.6 178.1 89.0 REMARK 620 5 HEC D 200 ND 91.3 90.0 179.8 90.9 REMARK 620 6 MET D 167 SD 175.6 93.4 88.0 88.3 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC D 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ETP RELATED DB: PDB REMARK 900 1ETP CONTAINS THE NATIVE PROTEIN WITHOUT VERIFICATION OF OXIDATION REMARK 900 STATE REMARK 900 RELATED ID: 1M6Z RELATED DB: PDB REMARK 900 1M6Z CONTAINS THE REDUCED RECOMBINANT CYTOCHROME C4 DBREF 1M70 A 1 190 UNP Q52369 CYC4_PSEST 21 210 DBREF 1M70 B 1 190 UNP Q52369 CYC4_PSEST 21 210 DBREF 1M70 C 1 190 UNP Q52369 CYC4_PSEST 21 210 DBREF 1M70 D 1 190 UNP Q52369 CYC4_PSEST 21 210 SEQRES 1 A 190 ALA GLY ASP ALA GLU ALA GLY GLN GLY LYS VAL ALA VAL SEQRES 2 A 190 CYS GLY ALA CYS HIS GLY VAL ASP GLY ASN SER PRO ALA SEQRES 3 A 190 PRO ASN PHE PRO LYS LEU ALA GLY GLN GLY GLU ARG TYR SEQRES 4 A 190 LEU LEU LYS GLN LEU GLN ASP ILE LYS ALA GLY SER THR SEQRES 5 A 190 PRO GLY ALA PRO GLU GLY VAL GLY ARG LYS VAL LEU GLU SEQRES 6 A 190 MET THR GLY MET LEU ASP PRO LEU SER ASP GLN ASP LEU SEQRES 7 A 190 GLU ASP ILE ALA ALA TYR PHE SER SER GLN LYS GLY SER SEQRES 8 A 190 VAL GLY TYR ALA ASP PRO ALA LEU ALA LYS GLN GLY GLU SEQRES 9 A 190 LYS LEU PHE ARG GLY GLY LYS LEU ASP GLN GLY MET PRO SEQRES 10 A 190 ALA CYS THR GLY CYS HIS ALA PRO ASN GLY VAL GLY ASN SEQRES 11 A 190 ASP LEU ALA GLY PHE PRO LYS LEU GLY GLY GLN HIS ALA SEQRES 12 A 190 ALA TYR THR ALA LYS GLN LEU THR ASP PHE ARG GLU GLY SEQRES 13 A 190 ASN ARG THR ASN ASP GLY ASP THR MET ILE MET ARG GLY SEQRES 14 A 190 VAL ALA ALA LYS LEU SER ASN LYS ASP ILE GLU ALA LEU SEQRES 15 A 190 SER SER TYR ILE GLN GLY LEU HIS SEQRES 1 B 190 ALA GLY ASP ALA GLU ALA GLY GLN GLY LYS VAL ALA VAL SEQRES 2 B 190 CYS GLY ALA CYS HIS GLY VAL ASP GLY ASN SER PRO ALA SEQRES 3 B 190 PRO ASN PHE PRO LYS LEU ALA GLY GLN GLY GLU ARG TYR SEQRES 4 B 190 LEU LEU LYS GLN LEU GLN ASP ILE LYS ALA GLY SER THR SEQRES 5 B 190 PRO GLY ALA PRO GLU GLY VAL GLY ARG LYS VAL LEU GLU SEQRES 6 B 190 MET THR GLY MET LEU ASP PRO LEU SER ASP GLN ASP LEU SEQRES 7 B 190 GLU ASP ILE ALA ALA TYR PHE SER SER GLN LYS GLY SER SEQRES 8 B 190 VAL GLY TYR ALA ASP PRO ALA LEU ALA LYS GLN GLY GLU SEQRES 9 B 190 LYS LEU PHE ARG GLY GLY LYS LEU ASP GLN GLY MET PRO SEQRES 10 B 190 ALA CYS THR GLY CYS HIS ALA PRO ASN GLY VAL GLY ASN SEQRES 11 B 190 ASP LEU ALA GLY PHE PRO LYS LEU GLY GLY GLN HIS ALA SEQRES 12 B 190 ALA TYR THR ALA LYS GLN LEU THR ASP PHE ARG GLU GLY SEQRES 13 B 190 ASN ARG THR ASN ASP GLY ASP THR MET ILE MET ARG GLY SEQRES 14 B 190 VAL ALA ALA LYS LEU SER ASN LYS ASP ILE GLU ALA LEU SEQRES 15 B 190 SER SER TYR ILE GLN GLY LEU HIS SEQRES 1 C 190 ALA GLY ASP ALA GLU ALA GLY GLN GLY LYS VAL ALA VAL SEQRES 2 C 190 CYS GLY ALA CYS HIS GLY VAL ASP GLY ASN SER PRO ALA SEQRES 3 C 190 PRO ASN PHE PRO LYS LEU ALA GLY GLN GLY GLU ARG TYR SEQRES 4 C 190 LEU LEU LYS GLN LEU GLN ASP ILE LYS ALA GLY SER THR SEQRES 5 C 190 PRO GLY ALA PRO GLU GLY VAL GLY ARG LYS VAL LEU GLU SEQRES 6 C 190 MET THR GLY MET LEU ASP PRO LEU SER ASP GLN ASP LEU SEQRES 7 C 190 GLU ASP ILE ALA ALA TYR PHE SER SER GLN LYS GLY SER SEQRES 8 C 190 VAL GLY TYR ALA ASP PRO ALA LEU ALA LYS GLN GLY GLU SEQRES 9 C 190 LYS LEU PHE ARG GLY GLY LYS LEU ASP GLN GLY MET PRO SEQRES 10 C 190 ALA CYS THR GLY CYS HIS ALA PRO ASN GLY VAL GLY ASN SEQRES 11 C 190 ASP LEU ALA GLY PHE PRO LYS LEU GLY GLY GLN HIS ALA SEQRES 12 C 190 ALA TYR THR ALA LYS GLN LEU THR ASP PHE ARG GLU GLY SEQRES 13 C 190 ASN ARG THR ASN ASP GLY ASP THR MET ILE MET ARG GLY SEQRES 14 C 190 VAL ALA ALA LYS LEU SER ASN LYS ASP ILE GLU ALA LEU SEQRES 15 C 190 SER SER TYR ILE GLN GLY LEU HIS SEQRES 1 D 190 ALA GLY ASP ALA GLU ALA GLY GLN GLY LYS VAL ALA VAL SEQRES 2 D 190 CYS GLY ALA CYS HIS GLY VAL ASP GLY ASN SER PRO ALA SEQRES 3 D 190 PRO ASN PHE PRO LYS LEU ALA GLY GLN GLY GLU ARG TYR SEQRES 4 D 190 LEU LEU LYS GLN LEU GLN ASP ILE LYS ALA GLY SER THR SEQRES 5 D 190 PRO GLY ALA PRO GLU GLY VAL GLY ARG LYS VAL LEU GLU SEQRES 6 D 190 MET THR GLY MET LEU ASP PRO LEU SER ASP GLN ASP LEU SEQRES 7 D 190 GLU ASP ILE ALA ALA TYR PHE SER SER GLN LYS GLY SER SEQRES 8 D 190 VAL GLY TYR ALA ASP PRO ALA LEU ALA LYS GLN GLY GLU SEQRES 9 D 190 LYS LEU PHE ARG GLY GLY LYS LEU ASP GLN GLY MET PRO SEQRES 10 D 190 ALA CYS THR GLY CYS HIS ALA PRO ASN GLY VAL GLY ASN SEQRES 11 D 190 ASP LEU ALA GLY PHE PRO LYS LEU GLY GLY GLN HIS ALA SEQRES 12 D 190 ALA TYR THR ALA LYS GLN LEU THR ASP PHE ARG GLU GLY SEQRES 13 D 190 ASN ARG THR ASN ASP GLY ASP THR MET ILE MET ARG GLY SEQRES 14 D 190 VAL ALA ALA LYS LEU SER ASN LYS ASP ILE GLU ALA LEU SEQRES 15 D 190 SER SER TYR ILE GLN GLY LEU HIS HET HEC A 199 43 HET HEC A 200 43 HET GOL A 201 6 HET HEC B 199 43 HET HEC B 200 43 HET HEC C 199 43 HET HEC C 200 43 HET HEC D 199 43 HET HEC D 200 43 HETNAM HEC HEME C HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 HEC 8(C34 H34 FE N4 O4) FORMUL 7 GOL C3 H8 O3 FORMUL 14 HOH *819(H2 O) HELIX 1 1 ASP A 3 GLY A 9 1 7 HELIX 2 2 LYS A 10 VAL A 13 5 4 HELIX 3 3 CYS A 14 GLY A 19 1 6 HELIX 4 4 GLY A 36 THR A 52 1 17 HELIX 5 5 VAL A 63 THR A 67 5 5 HELIX 6 6 SER A 74 GLN A 88 1 15 HELIX 7 7 ASP A 96 GLY A 110 1 15 HELIX 8 8 LYS A 111 GLY A 115 5 5 HELIX 9 9 CYS A 119 ALA A 124 1 6 HELIX 10 10 ASN A 130 GLY A 134 5 5 HELIX 11 11 HIS A 142 GLU A 155 1 14 HELIX 12 12 MET A 165 ALA A 172 1 8 HELIX 13 13 SER A 175 GLY A 188 1 14 HELIX 14 14 ASP B 3 GLY B 9 1 7 HELIX 15 15 LYS B 10 LYS B 10 5 1 HELIX 16 16 VAL B 11 VAL B 13 5 3 HELIX 17 17 CYS B 14 GLY B 19 1 6 HELIX 18 18 GLY B 36 THR B 52 1 17 HELIX 19 19 VAL B 63 THR B 67 5 5 HELIX 20 20 SER B 74 GLN B 88 1 15 HELIX 21 21 ASP B 96 GLY B 110 1 15 HELIX 22 22 LYS B 111 GLY B 115 5 5 HELIX 23 23 CYS B 119 ALA B 124 1 6 HELIX 24 24 HIS B 142 GLU B 155 1 14 HELIX 25 25 MET B 165 ALA B 172 1 8 HELIX 26 26 SER B 175 LEU B 189 1 15 HELIX 27 27 ASP C 3 GLN C 8 1 6 HELIX 28 28 VAL C 11 GLY C 19 1 9 HELIX 29 29 GLY C 36 THR C 52 1 17 HELIX 30 30 VAL C 63 THR C 67 5 5 HELIX 31 31 SER C 74 GLN C 88 1 15 HELIX 32 32 ASP C 96 GLY C 110 1 15 HELIX 33 33 LYS C 111 GLY C 115 5 5 HELIX 34 34 CYS C 119 ALA C 124 1 6 HELIX 35 35 ASN C 130 GLY C 134 5 5 HELIX 36 36 HIS C 142 GLU C 155 1 14 HELIX 37 37 MET C 165 ALA C 172 1 8 HELIX 38 38 SER C 175 LEU C 189 1 15 HELIX 39 39 ASP D 3 GLY D 9 1 7 HELIX 40 40 VAL D 11 GLY D 19 1 9 HELIX 41 41 GLY D 36 THR D 52 1 17 HELIX 42 42 VAL D 63 THR D 67 5 5 HELIX 43 43 SER D 74 GLN D 88 1 15 HELIX 44 44 ASP D 96 GLY D 110 1 15 HELIX 45 45 LYS D 111 GLY D 115 5 5 HELIX 46 46 CYS D 119 ALA D 124 1 6 HELIX 47 47 ASN D 130 GLY D 134 5 5 HELIX 48 48 HIS D 142 GLU D 155 1 14 HELIX 49 49 MET D 165 ALA D 172 1 8 HELIX 50 50 SER D 175 LEU D 189 1 15 LINK SG CYS A 14 CAB HEC A 199 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 199 1555 1555 1.83 LINK SG CYS A 119 CAB HEC A 200 1555 1555 1.84 LINK SG CYS A 122 CAC HEC A 200 1555 1555 1.83 LINK SG CYS B 14 CAB HEC B 199 1555 1555 1.81 LINK SG CYS B 17 CAC HEC B 199 1555 1555 1.82 LINK SG CYS B 119 CAB HEC B 200 1555 1555 1.84 LINK SG CYS B 122 CAC HEC B 200 1555 1555 1.81 LINK SG CYS C 14 CAB HEC C 199 1555 1555 1.82 LINK SG CYS C 17 CAC HEC C 199 1555 1555 1.82 LINK SG CYS C 119 CAB HEC C 200 1555 1555 1.85 LINK SG CYS C 122 CAC HEC C 200 1555 1555 1.83 LINK SG CYS D 14 CAB HEC D 199 1555 1555 1.81 LINK SG CYS D 17 CAC HEC D 199 1555 1555 1.83 LINK SG CYS D 119 CAB HEC D 200 1555 1555 1.82 LINK SG CYS D 122 CAC HEC D 200 1555 1555 1.83 LINK NE2 HIS A 18 FE HEC A 199 1555 1555 1.98 LINK SD MET A 66 FE HEC A 199 1555 1555 2.37 LINK NE2 HIS A 123 FE HEC A 200 1555 1555 1.97 LINK SD MET A 167 FE HEC A 200 1555 1555 2.34 LINK NE2 HIS B 18 FE HEC B 199 1555 1555 1.99 LINK SD MET B 66 FE HEC B 199 1555 1555 2.35 LINK NE2 HIS B 123 FE HEC B 200 1555 1555 1.96 LINK SD MET B 167 FE HEC B 200 1555 1555 2.31 LINK NE2 HIS C 18 FE HEC C 199 1555 1555 2.03 LINK SD MET C 66 FE HEC C 199 1555 1555 2.31 LINK NE2 HIS C 123 FE HEC C 200 1555 1555 2.00 LINK SD MET C 167 FE HEC C 200 1555 1555 2.31 LINK NE2 HIS D 18 FE HEC D 199 1555 1555 2.04 LINK SD MET D 66 FE HEC D 199 1555 1555 2.30 LINK NE2 HIS D 123 FE HEC D 200 1555 1555 2.00 LINK SD MET D 167 FE HEC D 200 1555 1555 2.30 SITE 1 AC1 24 VAL A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 24 PHE A 29 PRO A 30 LEU A 32 TYR A 39 SITE 3 AC1 24 GLN A 43 ILE A 47 ARG A 61 VAL A 63 SITE 4 AC1 24 GLU A 65 MET A 66 MET A 69 LEU A 70 SITE 5 AC1 24 ILE A 81 TYR A 145 LYS A 148 GLN A 149 SITE 6 AC1 24 HEC A 200 HOH A 204 HOH A 232 HOH A 316 SITE 1 AC2 19 TYR A 39 LYS A 42 GLN A 43 ALA A 118 SITE 2 AC2 19 CYS A 119 CYS A 122 HIS A 123 PRO A 136 SITE 3 AC2 19 LEU A 138 TYR A 145 GLN A 149 ARG A 158 SITE 4 AC2 19 ASN A 160 ILE A 166 MET A 167 HEC A 199 SITE 5 AC2 19 HOH A 202 HOH A 272 HOH A 341 SITE 1 AC3 21 VAL B 13 CYS B 14 CYS B 17 HIS B 18 SITE 2 AC3 21 PHE B 29 PRO B 30 TYR B 39 GLN B 43 SITE 3 AC3 21 ILE B 47 ARG B 61 VAL B 63 GLU B 65 SITE 4 AC3 21 MET B 66 MET B 69 LEU B 70 TYR B 145 SITE 5 AC3 21 LYS B 148 GLN B 149 HEC B 200 HOH B 203 SITE 6 AC3 21 HOH B 219 SITE 1 AC4 19 TYR B 39 LYS B 42 GLN B 43 ALA B 118 SITE 2 AC4 19 CYS B 119 CYS B 122 HIS B 123 PHE B 135 SITE 3 AC4 19 PRO B 136 LEU B 138 TYR B 145 ARG B 158 SITE 4 AC4 19 ASN B 160 ILE B 166 MET B 167 HEC B 199 SITE 5 AC4 19 HOH B 201 HOH B 340 ALA D 16 SITE 1 AC5 23 PHE A 135 VAL C 13 CYS C 14 CYS C 17 SITE 2 AC5 23 HIS C 18 PHE C 29 TYR C 39 GLN C 43 SITE 3 AC5 23 LEU C 44 ILE C 47 ARG C 61 VAL C 63 SITE 4 AC5 23 GLU C 65 MET C 66 MET C 69 LEU C 70 SITE 5 AC5 23 ILE C 81 TYR C 145 LYS C 148 GLN C 149 SITE 6 AC5 23 HEC C 200 HOH C 201 HOH C 273 SITE 1 AC6 20 ALA B 16 TYR C 39 LYS C 42 GLN C 43 SITE 2 AC6 20 ALA C 118 CYS C 119 CYS C 122 HIS C 123 SITE 3 AC6 20 PHE C 135 PRO C 136 LEU C 138 TYR C 145 SITE 4 AC6 20 ARG C 158 ASN C 160 MET C 167 VAL C 170 SITE 5 AC6 20 HEC C 199 HOH C 204 HOH C 219 HOH C 223 SITE 1 AC7 25 PHE B 135 VAL D 13 CYS D 14 CYS D 17 SITE 2 AC7 25 HIS D 18 PHE D 29 PRO D 30 TYR D 39 SITE 3 AC7 25 GLN D 43 LEU D 44 ILE D 47 ARG D 61 SITE 4 AC7 25 VAL D 63 GLU D 65 MET D 66 MET D 69 SITE 5 AC7 25 LEU D 70 ILE D 81 TYR D 145 LYS D 148 SITE 6 AC7 25 GLN D 149 HEC D 200 HOH D 201 HOH D 243 SITE 7 AC7 25 HOH D 294 SITE 1 AC8 22 ALA A 16 TYR D 39 LYS D 42 GLN D 43 SITE 2 AC8 22 ALA D 118 CYS D 119 CYS D 122 HIS D 123 SITE 3 AC8 22 PHE D 135 PRO D 136 LEU D 138 TYR D 145 SITE 4 AC8 22 GLN D 149 ARG D 158 ASN D 160 ILE D 166 SITE 5 AC8 22 MET D 167 VAL D 170 HEC D 199 HOH D 202 SITE 6 AC8 22 HOH D 225 HOH D 247 SITE 1 AC9 5 GLY A 188 LEU A 189 HIS A 190 HOH A 205 SITE 2 AC9 5 HOH A 225 CRYST1 74.960 57.640 84.410 90.00 104.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013341 0.000000 0.003383 0.00000 SCALE2 0.000000 0.017349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012222 0.00000