data_1M7D # _entry.id 1M7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1M7D pdb_00001m7d 10.2210/pdb1m7d/pdb RCSB RCSB016687 ? ? WWPDB D_1000016687 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-22 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 2 0 2020-07-29 7 'Structure model' 2 1 2024-10-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Atomic model' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' 9 7 'Structure model' 'Data collection' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Refinement description' 12 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' atom_site 3 6 'Structure model' chem_comp 4 6 'Structure model' entity 5 6 'Structure model' pdbx_branch_scheme 6 6 'Structure model' pdbx_chem_comp_identifier 7 6 'Structure model' pdbx_entity_branch 8 6 'Structure model' pdbx_entity_branch_descriptor 9 6 'Structure model' pdbx_entity_branch_link 10 6 'Structure model' pdbx_entity_branch_list 11 6 'Structure model' pdbx_entity_nonpoly 12 6 'Structure model' pdbx_nonpoly_scheme 13 6 'Structure model' pdbx_struct_assembly_gen 14 6 'Structure model' pdbx_struct_special_symmetry 15 6 'Structure model' struct_asym 16 6 'Structure model' struct_conn 17 6 'Structure model' struct_site 18 6 'Structure model' struct_site_gen 19 7 'Structure model' chem_comp 20 7 'Structure model' chem_comp_atom 21 7 'Structure model' chem_comp_bond 22 7 'Structure model' database_2 23 7 'Structure model' pdbx_entry_details 24 7 'Structure model' pdbx_initial_refinement_model 25 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.name' 2 6 'Structure model' '_atom_site.B_iso_or_equiv' 3 6 'Structure model' '_atom_site.Cartn_x' 4 6 'Structure model' '_atom_site.Cartn_y' 5 6 'Structure model' '_atom_site.Cartn_z' 6 6 'Structure model' '_atom_site.auth_asym_id' 7 6 'Structure model' '_atom_site.auth_atom_id' 8 6 'Structure model' '_atom_site.auth_comp_id' 9 6 'Structure model' '_atom_site.auth_seq_id' 10 6 'Structure model' '_atom_site.label_asym_id' 11 6 'Structure model' '_atom_site.label_atom_id' 12 6 'Structure model' '_atom_site.label_comp_id' 13 6 'Structure model' '_atom_site.label_entity_id' 14 6 'Structure model' '_atom_site.type_symbol' 15 6 'Structure model' '_chem_comp.mon_nstd_flag' 16 6 'Structure model' '_chem_comp.name' 17 6 'Structure model' '_chem_comp.type' 18 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 6 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 20 6 'Structure model' '_struct_conn.pdbx_dist_value' 21 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 7 'Structure model' '_chem_comp.pdbx_synonyms' 35 7 'Structure model' '_database_2.pdbx_DOI' 36 7 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M7D _pdbx_database_status.recvd_initial_deposition_date 2002-07-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MCP 'Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 A' unspecified PDB 1M71 ;Crystal structure of a Monoclonal Fab Specific for Shigella Flexneri Y lipopolysaccharide ; unspecified PDB 1M7I ;Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a pentasaccharide ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vyas, N.K.' 1 'Vyas, M.N.' 2 'Chervenak, M.C.' 3 'Johnson, M.A.' 4 'Pinto, B.M.' 5 'Bundle, D.R.' 6 'Quiocho, F.A.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics ; Biochemistry 41 13575 13586 2002 BICHAW US 0006-2960 0033 ? 12427018 10.1021/bi0261387 1 ;Preliminary Crystallographic Analysis of a Fab Specific for the O-antigen of Shigella flexneri Cell Surface Lipoplysacharide with and and without Bound Saccharides ; J.Mol.Biol. 231 133 136 1993 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1993.1262 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vyas, N.K.' 1 ? primary 'Vyas, M.N.' 2 ? primary 'Chervenak, M.C.' 3 ? primary 'Johnson, M.A.' 4 ? primary 'Pinto, B.M.' 5 ? primary 'Bundle, D.R.' 6 ? primary 'Quiocho, F.A.' 7 ? 1 'Vyas, N.K.' 8 ? 1 'Vyas, M.N.' 9 ? 1 'Meikele, P.J.' 10 ? 1 'Sinnott, B.' 11 ? 1 'Pinto, B.M.' 12 ? 1 'Bundle, D.R.' 13 ? 1 'Quiocho, F.A.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'light chain of the monoclonal antibody Fab SYA/J6' 23717.350 1 ? ? ? ? 2 polymer man 'heavy chain of the monoclonal antibody Fab SYA/J6' 23547.361 1 ? ? ? ? 3 branched man 'alpha-L-rhamnopyranose-(1-3)-alpha-L-Olivopyranose-(1-3)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' 511.517 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR ; ;DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR ; A ? 2 'polypeptide(L)' no no ;EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEPSGP ; ;EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEPSGP ; B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 VAL n 1 3 VAL n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 THR n 1 8 PRO n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 VAL n 1 14 ARG n 1 15 LEU n 1 16 GLY n 1 17 ASP n 1 18 GLN n 1 19 ALA n 1 20 SER n 1 21 ILE n 1 22 SER n 1 23 CYS n 1 24 ARG n 1 25 SER n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 LEU n 1 30 LEU n 1 31 HIS n 1 32 SER n 1 33 ASP n 1 34 GLY n 1 35 ASN n 1 36 THR n 1 37 TYR n 1 38 LEU n 1 39 HIS n 1 40 TRP n 1 41 TYR n 1 42 LEU n 1 43 GLN n 1 44 LYS n 1 45 PRO n 1 46 GLY n 1 47 GLN n 1 48 SER n 1 49 PRO n 1 50 LYS n 1 51 LEU n 1 52 LEU n 1 53 ILE n 1 54 TYR n 1 55 LYS n 1 56 VAL n 1 57 SER n 1 58 ASN n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 ARG n 1 67 PHE n 1 68 SER n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 LEU n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 ARG n 1 83 VAL n 1 84 GLU n 1 85 ALA n 1 86 GLU n 1 87 ASP n 1 88 LEU n 1 89 GLY n 1 90 VAL n 1 91 TYR n 1 92 PHE n 1 93 CYS n 1 94 SER n 1 95 GLN n 1 96 THR n 1 97 THR n 1 98 HIS n 1 99 VAL n 1 100 PRO n 1 101 THR n 1 102 PHE n 1 103 GLY n 1 104 GLY n 1 105 GLY n 1 106 THR n 1 107 LYS n 1 108 LEU n 1 109 GLU n 1 110 ILE n 1 111 LYS n 1 112 ARG n 1 113 ALA n 1 114 ASP n 1 115 ALA n 1 116 ALA n 1 117 PRO n 1 118 THR n 1 119 VAL n 1 120 SER n 1 121 ILE n 1 122 PHE n 1 123 PRO n 1 124 PRO n 1 125 SER n 1 126 SER n 1 127 GLU n 1 128 GLN n 1 129 LEU n 1 130 THR n 1 131 SER n 1 132 GLY n 1 133 GLY n 1 134 ALA n 1 135 SER n 1 136 VAL n 1 137 VAL n 1 138 CYS n 1 139 PHE n 1 140 LEU n 1 141 ASN n 1 142 ASN n 1 143 PHE n 1 144 TYR n 1 145 PRO n 1 146 LYS n 1 147 ASP n 1 148 ILE n 1 149 ASN n 1 150 VAL n 1 151 LYS n 1 152 TRP n 1 153 LYS n 1 154 ILE n 1 155 ASP n 1 156 GLY n 1 157 SER n 1 158 GLU n 1 159 ARG n 1 160 GLN n 1 161 ASN n 1 162 GLY n 1 163 VAL n 1 164 LEU n 1 165 ASN n 1 166 SER n 1 167 TRP n 1 168 THR n 1 169 ASP n 1 170 GLN n 1 171 ASP n 1 172 SER n 1 173 LYS n 1 174 ASP n 1 175 SER n 1 176 THR n 1 177 TYR n 1 178 SER n 1 179 MET n 1 180 SER n 1 181 SER n 1 182 THR n 1 183 LEU n 1 184 THR n 1 185 LEU n 1 186 THR n 1 187 LYS n 1 188 ASP n 1 189 GLU n 1 190 TYR n 1 191 GLU n 1 192 ARG n 1 193 HIS n 1 194 ASN n 1 195 SER n 1 196 TYR n 1 197 THR n 1 198 CYS n 1 199 GLU n 1 200 ALA n 1 201 THR n 1 202 HIS n 1 203 LYS n 1 204 THR n 1 205 SER n 1 206 THR n 1 207 SER n 1 208 PRO n 1 209 ILE n 1 210 VAL n 1 211 LYS n 1 212 SER n 1 213 PHE n 1 214 ASN n 1 215 ARG n 2 1 GLU n 2 2 VAL n 2 3 LYS n 2 4 VAL n 2 5 GLU n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 GLN n 2 14 PRO n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 MET n 2 19 LYS n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 VAL n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 ASN n 2 32 TYR n 2 33 TRP n 2 34 MET n 2 35 GLU n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 SER n 2 41 PRO n 2 42 GLU n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 GLU n 2 51 ILE n 2 52 ARG n 2 53 LEU n 2 54 LYS n 2 55 SER n 2 56 ASN n 2 57 ASN n 2 58 TYR n 2 59 ALA n 2 60 THR n 2 61 HIS n 2 62 TYR n 2 63 ALA n 2 64 GLU n 2 65 SER n 2 66 VAL n 2 67 LYS n 2 68 GLY n 2 69 ARG n 2 70 PHE n 2 71 THR n 2 72 ILE n 2 73 SER n 2 74 ARG n 2 75 ASP n 2 76 ASP n 2 77 SER n 2 78 LYS n 2 79 SER n 2 80 SER n 2 81 VAL n 2 82 TYR n 2 83 LEU n 2 84 GLN n 2 85 MET n 2 86 ASN n 2 87 ASN n 2 88 LEU n 2 89 ARG n 2 90 ALA n 2 91 GLU n 2 92 ASP n 2 93 THR n 2 94 GLY n 2 95 ILE n 2 96 TYR n 2 97 TYR n 2 98 CYS n 2 99 THR n 2 100 ARG n 2 101 GLY n 2 102 GLY n 2 103 ALA n 2 104 VAL n 2 105 GLY n 2 106 ALA n 2 107 MET n 2 108 ASP n 2 109 TYR n 2 110 TRP n 2 111 GLY n 2 112 GLN n 2 113 GLY n 2 114 THR n 2 115 SER n 2 116 VAL n 2 117 THR n 2 118 VAL n 2 119 SER n 2 120 SER n 2 121 ALA n 2 122 THR n 2 123 THR n 2 124 THR n 2 125 ALA n 2 126 PRO n 2 127 SER n 2 128 VAL n 2 129 TYR n 2 130 PRO n 2 131 LEU n 2 132 VAL n 2 133 PRO n 2 134 GLY n 2 135 CYS n 2 136 SER n 2 137 ASP n 2 138 THR n 2 139 SER n 2 140 GLY n 2 141 SER n 2 142 SER n 2 143 VAL n 2 144 THR n 2 145 LEU n 2 146 GLY n 2 147 CYS n 2 148 LEU n 2 149 VAL n 2 150 LYS n 2 151 GLY n 2 152 TYR n 2 153 PHE n 2 154 PRO n 2 155 GLU n 2 156 PRO n 2 157 VAL n 2 158 THR n 2 159 VAL n 2 160 LYS n 2 161 TRP n 2 162 ASN n 2 163 TYR n 2 164 GLY n 2 165 ALA n 2 166 LEU n 2 167 SER n 2 168 SER n 2 169 GLY n 2 170 VAL n 2 171 ARG n 2 172 THR n 2 173 VAL n 2 174 SER n 2 175 SER n 2 176 VAL n 2 177 LEU n 2 178 GLN n 2 179 SER n 2 180 GLY n 2 181 PHE n 2 182 TYR n 2 183 SER n 2 184 LEU n 2 185 SER n 2 186 SER n 2 187 LEU n 2 188 VAL n 2 189 THR n 2 190 VAL n 2 191 PRO n 2 192 SER n 2 193 SER n 2 194 THR n 2 195 TRP n 2 196 PRO n 2 197 SER n 2 198 GLN n 2 199 THR n 2 200 VAL n 2 201 ILE n 2 202 CYS n 2 203 ASN n 2 204 VAL n 2 205 ALA n 2 206 HIS n 2 207 PRO n 2 208 ALA n 2 209 SER n 2 210 LYS n 2 211 VAL n 2 212 ASP n 2 213 LEU n 2 214 ILE n 2 215 LYS n 2 216 GLU n 2 217 PRO n 2 218 SER n 2 219 GLY n 2 220 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus ? ? Balb/C ? ? ? ? 'Mus musculus' 10090 ? 'SYA/J6 hybridoma' ? Spleen ? 'Plasmacytoma cell' ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus ? ? Balb/C ? ? ? ? 'Mus musculus' 10090 ? 'SYA/J6 hybridoma' ? Spleen ? 'Plasmacytoma cell' ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'LRhapa1-3LOlia1-3DGlcpNAc[1Me]b1-OME' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,3,2/[a2122h-1b_1-5_1*OC_2*NCC/3=O][ad211m-1a_1-5][a2211m-1a_1-5]/1-2-3/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 3 3 '[][methyl]{[(1+1)][b-D-GlcpNAc]{[(3+1)][a-L-2,6-deoxy-Glcp]{[(3+1)][a-L-Rhap]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 RAE C1 O1 1 MAG O3 HO3 sing ? 2 3 3 RAM C1 O1 2 RAE O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAG D-saccharide n 'methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' ;BETA-METHYL-N-ACETYL-D-GLUCOSAMINE; methyl 2-acetamido-2-deoxy-beta-D-glucoside; methyl 2-acetamido-2-deoxy-D-glucoside; methyl 2-acetamido-2-deoxy-glucoside ; 'C9 H17 N O6' 235.234 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RAE 'L-saccharide, alpha linking' . alpha-L-Olivopyranose ;alpha-L-Olivose; 2,6-dideoxy-alpha-L-arabino-hexopyranose; 2,6-dideoxy-alpha-L-glucopyranose; 2,6-dideoxy-alpha-L-mannopyranose; 2-deoxy-alpha-L-quinovopyranose; 2-deoxy-alpha-L-rhamnoopyranose; L-Olivose; Olivose; 2-DEOXY-ALPHA-RHAMNOSE ; 'C6 H12 O4' 148.157 RAM 'L-saccharide, alpha linking' . alpha-L-rhamnopyranose 'alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose; L-rhamnose; rhamnose' 'C6 H12 O5' 164.156 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpNAc[1Me]b' MAG 'COMMON NAME' GMML 1.0 1-methyl-N-acetyl-b-D-glucopyranose MAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-methyl-N-acetyl-D-glucosamine RAE 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LOlia RAE 'COMMON NAME' GMML 1.0 a-L-Olivopyranose RAE 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-2-deoxy-Rhap RAE 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli RAM 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LRhapa RAM 'COMMON NAME' GMML 1.0 a-L-rhamnopyranose RAM 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Rhap RAM 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rha # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 SER 28 27 27 SER SER A A n A 1 29 LEU 29 27 27 LEU LEU A B n A 1 30 LEU 30 27 27 LEU LEU A C n A 1 31 HIS 31 27 27 HIS HIS A D n A 1 32 SER 32 27 27 SER SER A E n A 1 33 ASP 33 28 28 ASP ASP A . n A 1 34 GLY 34 29 29 GLY GLY A . n A 1 35 ASN 35 30 30 ASN ASN A . n A 1 36 THR 36 31 31 THR THR A . n A 1 37 TYR 37 32 32 TYR TYR A . n A 1 38 LEU 38 33 33 LEU LEU A . n A 1 39 HIS 39 34 34 HIS HIS A . n A 1 40 TRP 40 35 35 TRP TRP A . n A 1 41 TYR 41 36 36 TYR TYR A . n A 1 42 LEU 42 37 37 LEU LEU A . n A 1 43 GLN 43 38 38 GLN GLN A . n A 1 44 LYS 44 39 39 LYS LYS A . n A 1 45 PRO 45 40 40 PRO PRO A . n A 1 46 GLY 46 41 41 GLY GLY A . n A 1 47 GLN 47 42 42 GLN GLN A . n A 1 48 SER 48 43 43 SER SER A . n A 1 49 PRO 49 44 44 PRO PRO A . n A 1 50 LYS 50 45 45 LYS LYS A . n A 1 51 LEU 51 46 46 LEU LEU A . n A 1 52 LEU 52 47 47 LEU LEU A . n A 1 53 ILE 53 48 48 ILE ILE A . n A 1 54 TYR 54 49 49 TYR TYR A . n A 1 55 LYS 55 50 50 LYS LYS A . n A 1 56 VAL 56 51 51 VAL VAL A . n A 1 57 SER 57 52 52 SER SER A . n A 1 58 ASN 58 53 53 ASN ASN A . n A 1 59 ARG 59 54 54 ARG ARG A . n A 1 60 PHE 60 55 55 PHE PHE A . n A 1 61 SER 61 56 56 SER SER A . n A 1 62 GLY 62 57 57 GLY GLY A . n A 1 63 VAL 63 58 58 VAL VAL A . n A 1 64 PRO 64 59 59 PRO PRO A . n A 1 65 ASP 65 60 60 ASP ASP A . n A 1 66 ARG 66 61 61 ARG ARG A . n A 1 67 PHE 67 62 62 PHE PHE A . n A 1 68 SER 68 63 63 SER SER A . n A 1 69 GLY 69 64 64 GLY GLY A . n A 1 70 SER 70 65 65 SER SER A . n A 1 71 GLY 71 66 66 GLY GLY A . n A 1 72 SER 72 67 67 SER SER A . n A 1 73 GLY 73 68 68 GLY GLY A . n A 1 74 THR 74 69 69 THR THR A . n A 1 75 ASP 75 70 70 ASP ASP A . n A 1 76 PHE 76 71 71 PHE PHE A . n A 1 77 THR 77 72 72 THR THR A . n A 1 78 LEU 78 73 73 LEU LEU A . n A 1 79 LYS 79 74 74 LYS LYS A . n A 1 80 ILE 80 75 75 ILE ILE A . n A 1 81 SER 81 76 76 SER SER A . n A 1 82 ARG 82 77 77 ARG ARG A . n A 1 83 VAL 83 78 78 VAL VAL A . n A 1 84 GLU 84 79 79 GLU GLU A . n A 1 85 ALA 85 80 80 ALA ALA A . n A 1 86 GLU 86 81 81 GLU GLU A . n A 1 87 ASP 87 82 82 ASP ASP A . n A 1 88 LEU 88 83 83 LEU LEU A . n A 1 89 GLY 89 84 84 GLY GLY A . n A 1 90 VAL 90 85 85 VAL VAL A . n A 1 91 TYR 91 86 86 TYR TYR A . n A 1 92 PHE 92 87 87 PHE PHE A . n A 1 93 CYS 93 88 88 CYS CYS A . n A 1 94 SER 94 89 89 SER SER A . n A 1 95 GLN 95 90 90 GLN GLN A . n A 1 96 THR 96 91 91 THR THR A . n A 1 97 THR 97 92 92 THR THR A . n A 1 98 HIS 98 93 93 HIS HIS A . n A 1 99 VAL 99 94 94 VAL VAL A . n A 1 100 PRO 100 95 95 PRO PRO A . n A 1 101 THR 101 97 97 THR THR A . n A 1 102 PHE 102 98 98 PHE PHE A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 GLY 104 100 100 GLY GLY A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 THR 106 102 102 THR THR A . n A 1 107 LYS 107 103 103 LYS LYS A . n A 1 108 LEU 108 104 104 LEU LEU A . n A 1 109 GLU 109 105 105 GLU GLU A . n A 1 110 ILE 110 106 106 ILE ILE A . n A 1 111 LYS 111 107 107 LYS LYS A . n A 1 112 ARG 112 108 108 ARG ARG A . n A 1 113 ALA 113 109 109 ALA ALA A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 ALA 115 111 111 ALA ALA A . n A 1 116 ALA 116 112 112 ALA ALA A . n A 1 117 PRO 117 113 113 PRO PRO A . n A 1 118 THR 118 114 114 THR THR A . n A 1 119 VAL 119 115 115 VAL VAL A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 ILE 121 117 117 ILE ILE A . n A 1 122 PHE 122 118 118 PHE PHE A . n A 1 123 PRO 123 119 119 PRO PRO A . n A 1 124 PRO 124 120 120 PRO PRO A . n A 1 125 SER 125 121 121 SER SER A . n A 1 126 SER 126 122 122 SER SER A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 GLN 128 124 124 GLN GLN A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 THR 130 126 126 THR THR A . n A 1 131 SER 131 127 127 SER SER A . n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 GLY 133 129 129 GLY GLY A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 SER 135 131 131 SER SER A . n A 1 136 VAL 136 132 132 VAL VAL A . n A 1 137 VAL 137 133 133 VAL VAL A . n A 1 138 CYS 138 134 134 CYS CYS A . n A 1 139 PHE 139 135 135 PHE PHE A . n A 1 140 LEU 140 136 136 LEU LEU A . n A 1 141 ASN 141 137 137 ASN ASN A . n A 1 142 ASN 142 138 138 ASN ASN A . n A 1 143 PHE 143 139 139 PHE PHE A . n A 1 144 TYR 144 140 140 TYR TYR A . n A 1 145 PRO 145 141 141 PRO PRO A . n A 1 146 LYS 146 142 142 LYS LYS A . n A 1 147 ASP 147 143 143 ASP ASP A . n A 1 148 ILE 148 144 144 ILE ILE A . n A 1 149 ASN 149 145 145 ASN ASN A . n A 1 150 VAL 150 146 146 VAL VAL A . n A 1 151 LYS 151 147 147 LYS LYS A . n A 1 152 TRP 152 148 148 TRP TRP A . n A 1 153 LYS 153 149 149 LYS LYS A . n A 1 154 ILE 154 150 150 ILE ILE A . n A 1 155 ASP 155 151 151 ASP ASP A . n A 1 156 GLY 156 152 152 GLY GLY A . n A 1 157 SER 157 153 153 SER SER A . n A 1 158 GLU 158 154 154 GLU GLU A . n A 1 159 ARG 159 155 155 ARG ARG A . n A 1 160 GLN 160 156 156 GLN GLN A . n A 1 161 ASN 161 157 157 ASN ASN A . n A 1 162 GLY 162 158 158 GLY GLY A . n A 1 163 VAL 163 159 159 VAL VAL A . n A 1 164 LEU 164 160 160 LEU LEU A . n A 1 165 ASN 165 161 161 ASN ASN A . n A 1 166 SER 166 162 162 SER SER A . n A 1 167 TRP 167 163 163 TRP TRP A . n A 1 168 THR 168 164 164 THR THR A . n A 1 169 ASP 169 165 165 ASP ASP A . n A 1 170 GLN 170 166 166 GLN GLN A . n A 1 171 ASP 171 167 167 ASP ASP A . n A 1 172 SER 172 168 168 SER SER A . n A 1 173 LYS 173 169 169 LYS LYS A . n A 1 174 ASP 174 170 170 ASP ASP A . n A 1 175 SER 175 171 171 SER SER A . n A 1 176 THR 176 172 172 THR THR A . n A 1 177 TYR 177 173 173 TYR TYR A . n A 1 178 SER 178 174 174 SER SER A . n A 1 179 MET 179 175 175 MET MET A . n A 1 180 SER 180 176 176 SER SER A . n A 1 181 SER 181 177 177 SER SER A . n A 1 182 THR 182 178 178 THR THR A . n A 1 183 LEU 183 179 179 LEU LEU A . n A 1 184 THR 184 180 180 THR THR A . n A 1 185 LEU 185 181 181 LEU LEU A . n A 1 186 THR 186 182 182 THR THR A . n A 1 187 LYS 187 183 183 LYS LYS A . n A 1 188 ASP 188 184 184 ASP ASP A . n A 1 189 GLU 189 185 185 GLU GLU A . n A 1 190 TYR 190 186 186 TYR TYR A . n A 1 191 GLU 191 187 187 GLU GLU A . n A 1 192 ARG 192 188 188 ARG ARG A . n A 1 193 HIS 193 189 189 HIS HIS A . n A 1 194 ASN 194 190 190 ASN ASN A . n A 1 195 SER 195 191 191 SER SER A . n A 1 196 TYR 196 192 192 TYR TYR A . n A 1 197 THR 197 193 193 THR THR A . n A 1 198 CYS 198 194 194 CYS CYS A . n A 1 199 GLU 199 195 195 GLU GLU A . n A 1 200 ALA 200 196 196 ALA ALA A . n A 1 201 THR 201 197 197 THR THR A . n A 1 202 HIS 202 198 198 HIS HIS A . n A 1 203 LYS 203 199 199 LYS LYS A . n A 1 204 THR 204 200 200 THR THR A . n A 1 205 SER 205 201 201 SER SER A . n A 1 206 THR 206 202 202 THR THR A . n A 1 207 SER 207 203 203 SER SER A . n A 1 208 PRO 208 204 204 PRO PRO A . n A 1 209 ILE 209 205 205 ILE ILE A . n A 1 210 VAL 210 206 206 VAL VAL A . n A 1 211 LYS 211 207 207 LYS LYS A . n A 1 212 SER 212 208 208 SER SER A . n A 1 213 PHE 213 209 209 PHE PHE A . n A 1 214 ASN 214 210 210 ASN ASN A . n A 1 215 ARG 215 211 211 ARG ARG A . n B 2 1 GLU 1 1 1 GLU GLU B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 LYS 3 3 3 LYS LYS B . n B 2 4 VAL 4 4 4 VAL VAL B . n B 2 5 GLU 5 5 5 GLU GLU B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 MET 18 18 18 MET MET B . n B 2 19 LYS 19 19 19 LYS LYS B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 SER 21 21 21 SER SER B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 VAL 23 23 23 VAL VAL B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 PHE 27 27 27 PHE PHE B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 PHE 29 29 29 PHE PHE B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 ASN 31 31 31 ASN ASN B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 TRP 33 33 33 TRP TRP B . n B 2 34 MET 34 34 34 MET MET B . n B 2 35 GLU 35 35 35 GLU GLU B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 VAL 37 37 37 VAL VAL B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 SER 40 40 40 SER SER B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLU 42 42 42 GLU GLU B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 TRP 47 47 47 TRP TRP B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 ALA 49 49 49 ALA ALA B . n B 2 50 GLU 50 50 50 GLU GLU B . n B 2 51 ILE 51 51 51 ILE ILE B . n B 2 52 ARG 52 52 52 ARG ARG B . n B 2 53 LEU 53 52 52 LEU LEU B A n B 2 54 LYS 54 52 52 LYS LYS B B n B 2 55 SER 55 52 52 SER SER B C n B 2 56 ASN 56 53 53 ASN ASN B . n B 2 57 ASN 57 54 54 ASN ASN B . n B 2 58 TYR 58 55 55 TYR TYR B . n B 2 59 ALA 59 56 56 ALA ALA B . n B 2 60 THR 60 57 57 THR THR B . n B 2 61 HIS 61 58 58 HIS HIS B . n B 2 62 TYR 62 59 59 TYR TYR B . n B 2 63 ALA 63 60 60 ALA ALA B . n B 2 64 GLU 64 61 61 GLU GLU B . n B 2 65 SER 65 62 62 SER SER B . n B 2 66 VAL 66 63 63 VAL VAL B . n B 2 67 LYS 67 64 64 LYS LYS B . n B 2 68 GLY 68 65 65 GLY GLY B . n B 2 69 ARG 69 66 66 ARG ARG B . n B 2 70 PHE 70 67 67 PHE PHE B . n B 2 71 THR 71 68 68 THR THR B . n B 2 72 ILE 72 69 69 ILE ILE B . n B 2 73 SER 73 70 70 SER SER B . n B 2 74 ARG 74 71 71 ARG ARG B . n B 2 75 ASP 75 72 72 ASP ASP B . n B 2 76 ASP 76 73 73 ASP ASP B . n B 2 77 SER 77 74 74 SER SER B . n B 2 78 LYS 78 75 75 LYS LYS B . n B 2 79 SER 79 76 76 SER SER B . n B 2 80 SER 80 77 77 SER SER B . n B 2 81 VAL 81 78 78 VAL VAL B . n B 2 82 TYR 82 79 79 TYR TYR B . n B 2 83 LEU 83 80 80 LEU LEU B . n B 2 84 GLN 84 81 81 GLN GLN B . n B 2 85 MET 85 82 82 MET MET B . n B 2 86 ASN 86 82 82 ASN ASN B A n B 2 87 ASN 87 82 82 ASN ASN B B n B 2 88 LEU 88 82 82 LEU LEU B C n B 2 89 ARG 89 83 83 ARG ARG B . n B 2 90 ALA 90 84 84 ALA ALA B . n B 2 91 GLU 91 85 85 GLU GLU B . n B 2 92 ASP 92 86 86 ASP ASP B . n B 2 93 THR 93 87 87 THR THR B . n B 2 94 GLY 94 88 88 GLY GLY B . n B 2 95 ILE 95 89 89 ILE ILE B . n B 2 96 TYR 96 90 90 TYR TYR B . n B 2 97 TYR 97 91 91 TYR TYR B . n B 2 98 CYS 98 92 92 CYS CYS B . n B 2 99 THR 99 93 93 THR THR B . n B 2 100 ARG 100 94 94 ARG ARG B . n B 2 101 GLY 101 95 95 GLY GLY B . n B 2 102 GLY 102 96 96 GLY GLY B . n B 2 103 ALA 103 97 97 ALA ALA B . n B 2 104 VAL 104 98 98 VAL VAL B . n B 2 105 GLY 105 99 99 GLY GLY B . n B 2 106 ALA 106 100 100 ALA ALA B . n B 2 107 MET 107 100 100 MET MET B A n B 2 108 ASP 108 101 101 ASP ASP B . n B 2 109 TYR 109 102 102 TYR TYR B . n B 2 110 TRP 110 103 103 TRP TRP B . n B 2 111 GLY 111 104 104 GLY GLY B . n B 2 112 GLN 112 105 105 GLN GLN B . n B 2 113 GLY 113 106 106 GLY GLY B . n B 2 114 THR 114 107 107 THR THR B . n B 2 115 SER 115 108 108 SER SER B . n B 2 116 VAL 116 109 109 VAL VAL B . n B 2 117 THR 117 110 110 THR THR B . n B 2 118 VAL 118 111 111 VAL VAL B . n B 2 119 SER 119 112 112 SER SER B . n B 2 120 SER 120 113 113 SER SER B . n B 2 121 ALA 121 114 114 ALA ALA B . n B 2 122 THR 122 115 115 THR THR B . n B 2 123 THR 123 116 116 THR THR B . n B 2 124 THR 124 117 117 THR THR B . n B 2 125 ALA 125 118 118 ALA ALA B . n B 2 126 PRO 126 119 119 PRO PRO B . n B 2 127 SER 127 120 120 SER SER B . n B 2 128 VAL 128 121 121 VAL VAL B . n B 2 129 TYR 129 122 122 TYR TYR B . n B 2 130 PRO 130 123 123 PRO PRO B . n B 2 131 LEU 131 124 124 LEU LEU B . n B 2 132 VAL 132 125 125 VAL VAL B . n B 2 133 PRO 133 126 126 PRO PRO B . n B 2 134 GLY 134 127 127 GLY GLY B . n B 2 135 CYS 135 128 128 CYS CYS B . n B 2 136 SER 136 129 129 SER SER B . n B 2 137 ASP 137 130 130 ASP ASP B . n B 2 138 THR 138 131 131 THR THR B . n B 2 139 SER 139 132 132 SER SER B . n B 2 140 GLY 140 133 133 GLY GLY B . n B 2 141 SER 141 134 134 SER SER B . n B 2 142 SER 142 135 135 SER SER B . n B 2 143 VAL 143 136 136 VAL VAL B . n B 2 144 THR 144 137 137 THR THR B . n B 2 145 LEU 145 138 138 LEU LEU B . n B 2 146 GLY 146 139 139 GLY GLY B . n B 2 147 CYS 147 140 140 CYS CYS B . n B 2 148 LEU 148 141 141 LEU LEU B . n B 2 149 VAL 149 142 142 VAL VAL B . n B 2 150 LYS 150 143 143 LYS LYS B . n B 2 151 GLY 151 144 144 GLY GLY B . n B 2 152 TYR 152 145 145 TYR TYR B . n B 2 153 PHE 153 146 146 PHE PHE B . n B 2 154 PRO 154 147 147 PRO PRO B . n B 2 155 GLU 155 148 148 GLU GLU B . n B 2 156 PRO 156 149 149 PRO PRO B . n B 2 157 VAL 157 150 150 VAL VAL B . n B 2 158 THR 158 151 151 THR THR B . n B 2 159 VAL 159 152 152 VAL VAL B . n B 2 160 LYS 160 153 153 LYS LYS B . n B 2 161 TRP 161 154 154 TRP TRP B . n B 2 162 ASN 162 155 155 ASN ASN B . n B 2 163 TYR 163 156 156 TYR TYR B . n B 2 164 GLY 164 157 157 GLY GLY B . n B 2 165 ALA 165 158 158 ALA ALA B . n B 2 166 LEU 166 159 159 LEU LEU B . n B 2 167 SER 167 160 160 SER SER B . n B 2 168 SER 168 161 161 SER SER B . n B 2 169 GLY 169 162 162 GLY GLY B . n B 2 170 VAL 170 163 163 VAL VAL B . n B 2 171 ARG 171 164 164 ARG ARG B . n B 2 172 THR 172 165 165 THR THR B . n B 2 173 VAL 173 166 166 VAL VAL B . n B 2 174 SER 174 167 167 SER SER B . n B 2 175 SER 175 168 168 SER SER B . n B 2 176 VAL 176 169 169 VAL VAL B . n B 2 177 LEU 177 170 170 LEU LEU B . n B 2 178 GLN 178 171 171 GLN GLN B . n B 2 179 SER 179 172 172 SER SER B . n B 2 180 GLY 180 173 173 GLY GLY B . n B 2 181 PHE 181 174 174 PHE PHE B . n B 2 182 TYR 182 175 175 TYR TYR B . n B 2 183 SER 183 176 176 SER SER B . n B 2 184 LEU 184 177 177 LEU LEU B . n B 2 185 SER 185 178 178 SER SER B . n B 2 186 SER 186 179 179 SER SER B . n B 2 187 LEU 187 180 180 LEU LEU B . n B 2 188 VAL 188 181 181 VAL VAL B . n B 2 189 THR 189 182 182 THR THR B . n B 2 190 VAL 190 183 183 VAL VAL B . n B 2 191 PRO 191 184 184 PRO PRO B . n B 2 192 SER 192 185 185 SER SER B . n B 2 193 SER 193 186 186 SER SER B . n B 2 194 THR 194 187 187 THR THR B . n B 2 195 TRP 195 188 188 TRP TRP B . n B 2 196 PRO 196 189 189 PRO PRO B . n B 2 197 SER 197 190 190 SER SER B . n B 2 198 GLN 198 191 191 GLN GLN B . n B 2 199 THR 199 192 192 THR THR B . n B 2 200 VAL 200 193 193 VAL VAL B . n B 2 201 ILE 201 194 194 ILE ILE B . n B 2 202 CYS 202 195 195 CYS CYS B . n B 2 203 ASN 203 196 196 ASN ASN B . n B 2 204 VAL 204 197 197 VAL VAL B . n B 2 205 ALA 205 198 198 ALA ALA B . n B 2 206 HIS 206 199 199 HIS HIS B . n B 2 207 PRO 207 200 200 PRO PRO B . n B 2 208 ALA 208 201 201 ALA ALA B . n B 2 209 SER 209 202 202 SER SER B . n B 2 210 LYS 210 203 203 LYS LYS B . n B 2 211 VAL 211 204 204 VAL VAL B . n B 2 212 ASP 212 205 205 ASP ASP B . n B 2 213 LEU 213 206 206 LEU LEU B . n B 2 214 ILE 214 207 207 ILE ILE B . n B 2 215 LYS 215 208 208 LYS LYS B . n B 2 216 GLU 216 209 209 GLU GLU B . n B 2 217 PRO 217 210 210 PRO PRO B . n B 2 218 SER 218 211 211 SER SER B . n B 2 219 GLY 219 212 212 GLY GLY B . n B 2 220 PRO 220 213 213 PRO PRO B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 MAG 1 C MAG 1 C NGA 3 n C 3 RAE 2 C RAE 2 C RH2 2 n C 3 RAM 3 C RAM 3 C RHA 1 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 404 1 HOH TIP A . D 4 HOH 2 405 2 HOH TIP A . D 4 HOH 3 406 3 HOH TIP A . D 4 HOH 4 407 5 HOH TIP A . D 4 HOH 5 408 7 HOH TIP A . D 4 HOH 6 409 8 HOH TIP A . D 4 HOH 7 410 9 HOH TIP A . D 4 HOH 8 411 10 HOH TIP A . D 4 HOH 9 412 11 HOH TIP A . D 4 HOH 10 413 12 HOH TIP A . D 4 HOH 11 414 13 HOH TIP A . D 4 HOH 12 415 15 HOH TIP A . D 4 HOH 13 416 16 HOH TIP A . D 4 HOH 14 417 17 HOH TIP A . D 4 HOH 15 418 20 HOH TIP A . D 4 HOH 16 419 21 HOH TIP A . D 4 HOH 17 420 23 HOH TIP A . D 4 HOH 18 421 26 HOH TIP A . D 4 HOH 19 422 28 HOH TIP A . D 4 HOH 20 423 30 HOH TIP A . D 4 HOH 21 424 32 HOH TIP A . D 4 HOH 22 425 33 HOH TIP A . D 4 HOH 23 426 34 HOH TIP A . D 4 HOH 24 427 35 HOH TIP A . D 4 HOH 25 428 36 HOH TIP A . D 4 HOH 26 429 37 HOH TIP A . D 4 HOH 27 430 38 HOH TIP A . D 4 HOH 28 431 40 HOH TIP A . D 4 HOH 29 432 42 HOH TIP A . D 4 HOH 30 433 43 HOH TIP A . D 4 HOH 31 434 47 HOH TIP A . D 4 HOH 32 435 48 HOH TIP A . D 4 HOH 33 436 51 HOH TIP A . D 4 HOH 34 437 54 HOH TIP A . D 4 HOH 35 438 55 HOH TIP A . D 4 HOH 36 439 59 HOH TIP A . D 4 HOH 37 440 62 HOH TIP A . D 4 HOH 38 441 66 HOH TIP A . D 4 HOH 39 442 69 HOH TIP A . D 4 HOH 40 443 72 HOH TIP A . D 4 HOH 41 444 73 HOH TIP A . D 4 HOH 42 445 74 HOH TIP A . D 4 HOH 43 446 75 HOH TIP A . D 4 HOH 44 447 77 HOH TIP A . D 4 HOH 45 448 79 HOH TIP A . D 4 HOH 46 449 81 HOH TIP A . D 4 HOH 47 450 82 HOH TIP A . D 4 HOH 48 451 83 HOH TIP A . D 4 HOH 49 452 84 HOH TIP A . D 4 HOH 50 453 85 HOH TIP A . D 4 HOH 51 454 87 HOH TIP A . D 4 HOH 52 455 88 HOH TIP A . D 4 HOH 53 456 89 HOH TIP A . D 4 HOH 54 457 90 HOH TIP A . D 4 HOH 55 458 91 HOH TIP A . D 4 HOH 56 459 92 HOH TIP A . D 4 HOH 57 460 93 HOH TIP A . D 4 HOH 58 461 94 HOH TIP A . D 4 HOH 59 462 95 HOH TIP A . D 4 HOH 60 463 97 HOH TIP A . D 4 HOH 61 464 98 HOH TIP A . D 4 HOH 62 465 115 HOH TIP A . E 4 HOH 1 214 4 HOH TIP B . E 4 HOH 2 215 6 HOH TIP B . E 4 HOH 3 216 14 HOH TIP B . E 4 HOH 4 217 18 HOH TIP B . E 4 HOH 5 218 19 HOH TIP B . E 4 HOH 6 219 22 HOH TIP B . E 4 HOH 7 220 24 HOH TIP B . E 4 HOH 8 221 25 HOH TIP B . E 4 HOH 9 222 27 HOH TIP B . E 4 HOH 10 223 29 HOH TIP B . E 4 HOH 11 224 31 HOH TIP B . E 4 HOH 12 225 39 HOH TIP B . E 4 HOH 13 226 41 HOH TIP B . E 4 HOH 14 227 44 HOH TIP B . E 4 HOH 15 228 45 HOH TIP B . E 4 HOH 16 229 46 HOH TIP B . E 4 HOH 17 230 49 HOH TIP B . E 4 HOH 18 231 50 HOH TIP B . E 4 HOH 19 232 52 HOH TIP B . E 4 HOH 20 233 53 HOH TIP B . E 4 HOH 21 234 56 HOH TIP B . E 4 HOH 22 235 57 HOH TIP B . E 4 HOH 23 236 58 HOH TIP B . E 4 HOH 24 237 60 HOH TIP B . E 4 HOH 25 238 61 HOH TIP B . E 4 HOH 26 239 63 HOH TIP B . E 4 HOH 27 240 64 HOH TIP B . E 4 HOH 28 241 65 HOH TIP B . E 4 HOH 29 242 67 HOH TIP B . E 4 HOH 30 243 68 HOH TIP B . E 4 HOH 31 244 70 HOH TIP B . E 4 HOH 32 245 71 HOH TIP B . E 4 HOH 33 246 76 HOH TIP B . E 4 HOH 34 247 78 HOH TIP B . E 4 HOH 35 248 80 HOH TIP B . E 4 HOH 36 249 86 HOH TIP B . E 4 HOH 37 250 96 HOH TIP B . E 4 HOH 38 251 99 HOH TIP B . E 4 HOH 39 252 100 HOH TIP B . E 4 HOH 40 253 101 HOH TIP B . E 4 HOH 41 254 102 HOH TIP B . E 4 HOH 42 255 103 HOH TIP B . E 4 HOH 43 256 104 HOH TIP B . E 4 HOH 44 257 105 HOH TIP B . E 4 HOH 45 258 106 HOH TIP B . E 4 HOH 46 259 107 HOH TIP B . E 4 HOH 47 260 108 HOH TIP B . E 4 HOH 48 261 109 HOH TIP B . E 4 HOH 49 262 110 HOH TIP B . E 4 HOH 50 263 111 HOH TIP B . E 4 HOH 51 264 112 HOH TIP B . E 4 HOH 52 265 113 HOH TIP B . E 4 HOH 53 266 114 HOH TIP B . E 4 HOH 54 267 116 HOH TIP B . E 4 HOH 55 268 117 HOH TIP B . E 4 HOH 56 269 118 HOH TIP B . E 4 HOH 57 270 119 HOH TIP B . E 4 HOH 58 271 120 HOH TIP B . E 4 HOH 59 272 121 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Weissenberg 'data collection' . ? 1 WEIS 'data reduction' . ? 2 Protein 'data reduction' . ? 3 MERLOT phasing . ? 4 CNS refinement 1.0 ? 5 WEISSENBERG 'data reduction' . ? 6 WEIS 'data scaling' . ? 7 PROTEIN 'data scaling' . ? 8 # _cell.entry_id 1M7D _cell.length_a 71.000 _cell.length_b 71.000 _cell.length_c 198.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1M7D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1M7D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_percent_sol 53.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MPD, potassium phoshate, , pH 6.5, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 281 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type WEISSENBERG _diffrn_detector.pdbx_collection_date 1990-06-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1M7D _reflns.observed_criterion_sigma_I 1.50 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 17923 _reflns.number_all ? _reflns.percent_possible_obs 76.7 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 7.5 _reflns.B_iso_Wilson_estimate 23.7 _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_all 51.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 112 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1M7D _refine.ls_number_reflns_obs 17923 _refine.ls_number_reflns_all 17923 _refine.pdbx_ls_sigma_I 1.5 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 76031.28 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 19.98 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 76.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 869 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.2 _refine.aniso_B[1][1] 4.59 _refine.aniso_B[2][2] 4.59 _refine.aniso_B[3][3] -9.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.348726 _refine.solvent_model_param_bsol 39.674 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Author states residues 127-135 of chain B is part of a disordered segment.' _refine.pdbx_starting_model 'PDB ENTRY 1MCP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 76031.28 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1M7D _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 3478 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.92 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1844 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 51.3 _refine_ls_shell.R_factor_R_free 0.327 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 5.8 _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER_REP.TOP 'X-RAY DIFFRACTION' 3 PARAM1NKV.CHO TOPH1NKV.CHO 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1M7D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1M7D _struct.title 'Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M7D _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Fab-carbohydrate interactions, Shigella O-antigen, anti-carbohydrate antibody, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1M7D 1M7D ? ? ? 2 2 PDB 1M7D 1M7D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1M7D A 1 ? 215 ? 1M7D 1 ? 211 ? 1 211 2 2 1M7D B 1 ? 220 ? 1M7D 1 ? 213 ? 1 213 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4650 ? 1 MORE -7 ? 1 'SSA (A^2)' 19390 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 84 ? LEU A 88 ? GLU A 79 LEU A 83 5 ? 5 HELX_P HELX_P2 2 SER A 125 ? SER A 131 ? SER A 121 SER A 127 5 ? 7 HELX_P HELX_P3 3 LYS A 187 ? ARG A 192 ? LYS A 183 ARG A 188 1 ? 6 HELX_P HELX_P4 4 THR B 28 ? TYR B 32 ? THR B 28 TYR B 32 5 ? 5 HELX_P HELX_P5 5 LEU B 53 A ASN B 57 ? LEU B 52 ASN B 54 5 ? 5 HELX_P HELX_P6 6 ARG B 89 ? THR B 93 ? ARG B 83 THR B 87 5 ? 5 HELX_P HELX_P7 7 TYR B 163 ? ALA B 165 ? TYR B 156 ALA B 158 5 ? 3 HELX_P HELX_P8 8 PRO B 207 ? LYS B 210 ? PRO B 200 LYS B 203 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? A CYS 138 SG ? ? ? 1_555 A CYS 198 SG ? ? A CYS 134 A CYS 194 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 98 SG ? ? B CYS 22 B CYS 92 1_555 ? ? ? ? ? ? ? 2.440 ? ? disulf4 disulf ? ? B CYS 147 SG ? ? ? 1_555 B CYS 202 SG ? ? B CYS 140 B CYS 195 1_555 ? ? ? ? ? ? ? 2.024 ? ? covale1 covale both ? C MAG . O3 ? ? ? 1_555 C RAE . C1 ? ? C MAG 1 C RAE 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale2 covale both ? C RAE . O3 ? ? ? 1_555 C RAM . C1 ? ? C RAE 2 C RAM 3 1_555 ? ? ? ? ? ? ? 1.449 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 23 ? CYS A 93 ? CYS A 23 ? 1_555 CYS A 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 138 ? CYS A 198 ? CYS A 134 ? 1_555 CYS A 194 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 22 ? CYS B 98 ? CYS B 22 ? 1_555 CYS B 92 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 147 ? CYS B 202 ? CYS B 140 ? 1_555 CYS B 195 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 7 A . ? THR 7 A PRO 8 A ? PRO 8 A 1 0.04 2 TYR 144 A . ? TYR 140 A PRO 145 A ? PRO 141 A 1 0.16 3 PHE 153 B . ? PHE 146 B PRO 154 B ? PRO 147 B 1 -0.12 4 GLU 155 B . ? GLU 148 B PRO 156 B ? PRO 149 B 1 -0.07 5 TRP 195 B . ? TRP 188 B PRO 196 B ? PRO 189 B 1 -0.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 8 ? G ? 6 ? H ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel F 6 7 ? anti-parallel F 7 8 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel G 4 5 ? anti-parallel G 5 6 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? THR A 7 ? LEU A 4 THR A 7 A 2 ALA A 19 ? SER A 25 ? ALA A 19 SER A 25 A 3 ASP A 75 ? ILE A 80 ? ASP A 70 ILE A 75 A 4 PHE A 67 ? SER A 72 ? PHE A 62 SER A 67 B 1 SER A 10 ? ARG A 14 ? SER A 10 ARG A 14 B 2 THR A 106 ? LYS A 111 ? THR A 102 LYS A 107 B 3 GLY A 89 ? GLN A 95 ? GLY A 84 GLN A 90 B 4 THR A 101 ? PHE A 102 ? THR A 97 PHE A 98 B 5 GLY A 89 ? GLN A 95 ? GLY A 84 GLN A 90 B 6 LEU A 38 ? GLN A 43 ? LEU A 33 GLN A 38 B 7 LYS A 50 ? TYR A 54 ? LYS A 45 TYR A 49 B 8 ASN A 58 ? ARG A 59 ? ASN A 53 ARG A 54 C 1 THR A 118 ? PHE A 122 ? THR A 114 PHE A 118 C 2 GLY A 133 ? PHE A 143 ? GLY A 129 PHE A 139 C 3 TYR A 177 ? THR A 186 ? TYR A 173 THR A 182 C 4 VAL A 163 ? TRP A 167 ? VAL A 159 TRP A 163 D 1 SER A 157 ? ARG A 159 ? SER A 153 ARG A 155 D 2 ASN A 149 ? ILE A 154 ? ASN A 145 ILE A 150 D 3 SER A 195 ? THR A 201 ? SER A 191 THR A 197 D 4 ILE A 209 ? ASN A 214 ? ILE A 205 ASN A 210 E 1 LYS B 3 ? SER B 7 ? LYS B 3 SER B 7 E 2 MET B 18 ? SER B 25 ? MET B 18 SER B 25 E 3 SER B 80 ? MET B 85 ? SER B 77 MET B 82 E 4 PHE B 70 ? ASP B 75 ? PHE B 67 ASP B 72 F 1 GLY B 10 ? VAL B 12 ? GLY B 10 VAL B 12 F 2 THR B 114 ? VAL B 118 ? THR B 107 VAL B 111 F 3 GLY B 94 ? GLY B 101 ? GLY B 88 GLY B 95 F 4 MET B 107 A TRP B 110 ? MET B 100 TRP B 103 F 5 GLY B 94 ? GLY B 101 ? GLY B 88 GLY B 95 F 6 TRP B 33 ? SER B 40 ? TRP B 33 SER B 40 F 7 GLY B 44 ? ILE B 51 ? GLY B 44 ILE B 51 F 8 THR B 60 ? TYR B 62 ? THR B 57 TYR B 59 G 1 VAL B 170 ? THR B 172 ? VAL B 163 THR B 165 G 2 PHE B 181 ? VAL B 190 ? PHE B 174 VAL B 183 G 3 VAL B 176 ? GLN B 178 ? VAL B 169 GLN B 171 G 4 PHE B 181 ? VAL B 190 ? PHE B 174 VAL B 183 G 5 VAL B 143 ? TYR B 152 ? VAL B 136 TYR B 145 G 6 SER B 127 ? LEU B 131 ? SER B 120 LEU B 124 H 1 THR B 158 ? TRP B 161 ? THR B 151 TRP B 154 H 2 CYS B 202 ? HIS B 206 ? CYS B 195 HIS B 199 H 3 VAL B 211 ? LYS B 215 ? VAL B 204 LYS B 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 7 ? O THR A 7 N SER A 22 ? N SER A 22 A 2 3 N CYS A 23 ? N CYS A 23 O PHE A 76 ? O PHE A 71 A 3 4 N LYS A 79 ? N LYS A 74 O SER A 68 ? O SER A 63 B 1 2 N LEU A 11 ? N LEU A 11 O LYS A 107 ? O LYS A 103 B 2 3 N LEU A 108 ? N LEU A 104 O GLY A 89 ? O GLY A 84 B 3 4 N GLN A 95 ? N GLN A 90 O THR A 101 ? O THR A 97 B 4 5 O THR A 101 ? O THR A 97 N GLN A 95 ? N GLN A 90 B 5 6 O SER A 94 ? O SER A 89 N HIS A 39 ? N HIS A 34 B 6 7 N LEU A 42 ? N LEU A 37 O LYS A 50 ? O LYS A 45 B 7 8 N TYR A 54 ? N TYR A 49 O ASN A 58 ? O ASN A 53 C 1 2 N PHE A 122 ? N PHE A 118 O VAL A 137 ? O VAL A 133 C 2 3 O PHE A 143 ? O PHE A 139 N TYR A 177 ? N TYR A 173 C 3 4 N THR A 182 ? N THR A 178 O LEU A 164 ? O LEU A 160 D 1 2 N ARG A 159 ? N ARG A 155 O TRP A 152 ? O TRP A 148 D 2 3 N LYS A 153 ? N LYS A 149 O THR A 197 ? O THR A 193 D 3 4 O ALA A 200 ? O ALA A 196 N ILE A 209 ? N ILE A 205 E 1 2 O SER B 7 ? O SER B 7 N SER B 21 ? N SER B 21 E 2 3 O CYS B 22 ? O CYS B 22 N VAL B 81 ? N VAL B 78 E 3 4 N GLN B 84 ? N GLN B 81 O THR B 71 ? O THR B 68 F 1 2 N GLY B 10 ? N GLY B 10 O SER B 115 ? O SER B 108 F 2 3 O VAL B 116 ? O VAL B 109 N GLY B 94 ? N GLY B 88 F 3 4 O ARG B 100 ? O ARG B 94 N ASP B 108 ? N ASP B 101 F 4 5 O TYR B 109 ? O TYR B 102 N ARG B 100 ? N ARG B 94 F 5 6 N GLY B 101 ? N GLY B 95 O TRP B 33 ? O TRP B 33 F 6 7 O SER B 40 ? O SER B 40 N GLY B 44 ? N GLY B 44 F 7 8 O GLU B 50 ? O GLU B 50 N HIS B 61 ? N HIS B 58 G 1 2 N ARG B 171 ? N ARG B 164 O LEU B 187 ? O LEU B 180 G 2 3 O SER B 183 ? O SER B 176 N VAL B 176 ? N VAL B 169 G 3 4 N GLN B 178 ? N GLN B 171 O PHE B 181 ? O PHE B 174 G 4 5 O VAL B 190 ? O VAL B 183 N VAL B 143 ? N VAL B 136 G 5 6 O LYS B 150 ? O LYS B 143 N SER B 127 ? N SER B 120 H 1 2 O LYS B 160 ? O LYS B 153 N ASN B 203 ? N ASN B 196 H 2 3 N HIS B 206 ? N HIS B 199 O VAL B 211 ? O VAL B 204 # _pdbx_entry_details.entry_id 1M7D _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B PRO 14 ? ? N B GLY 15 ? ? 1.32 2 1 CA B PRO 14 ? ? N B GLY 15 ? ? 1.35 3 1 C B PRO 14 ? ? CA B GLY 15 ? ? 1.35 4 1 O B PRO 126 ? ? CA B GLY 127 ? ? 1.35 5 1 CA B PRO 126 ? ? N B GLY 127 ? ? 1.45 6 1 C B PRO 126 ? ? N B CYS 128 ? ? 1.65 7 1 O B PRO 126 ? ? C B GLY 127 ? ? 1.72 8 1 O B PRO 126 ? ? N B CYS 128 ? ? 1.73 9 1 O B VAL 125 ? ? N B GLY 127 ? ? 2.12 10 1 O B SER 134 ? ? CG2 B THR 182 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C B GLN 13 ? ? N B PRO 14 ? ? 1.207 1.338 -0.131 0.019 Y 2 1 C B PRO 14 ? ? N B GLY 15 ? ? 0.186 1.336 -1.150 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 134 ? ? CB A CYS 134 ? ? SG A CYS 134 ? ? 121.07 114.20 6.87 1.10 N 2 1 CA B GLN 13 ? ? C B GLN 13 ? ? N B PRO 14 ? ? 134.44 117.10 17.34 2.80 Y 3 1 O B GLN 13 ? ? C B GLN 13 ? ? N B PRO 14 ? ? 104.34 121.10 -16.76 1.90 Y 4 1 C B GLN 13 ? ? N B PRO 14 ? ? CA B PRO 14 ? ? 129.34 119.30 10.04 1.50 Y 5 1 CA B PRO 14 ? ? C B PRO 14 ? ? N B GLY 15 ? ? 13.01 116.20 -103.19 2.00 Y 6 1 C B PRO 14 ? ? N B GLY 15 ? ? CA B GLY 15 ? ? 54.01 122.30 -68.29 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 51 ? ? 71.72 -48.94 2 1 SER A 67 ? ? -167.69 91.99 3 1 ALA A 80 ? ? -29.11 -57.26 4 1 HIS A 93 ? ? -115.18 -160.26 5 1 TYR A 140 ? ? -173.47 137.62 6 1 PRO A 141 ? ? -58.69 -179.33 7 1 LYS A 169 ? ? -79.36 -75.15 8 1 THR A 200 ? ? -66.73 17.91 9 1 PRO B 14 ? ? -74.64 21.88 10 1 MET B 18 ? ? -170.14 144.05 11 1 THR B 28 ? ? -66.56 90.02 12 1 ARG B 52 ? ? -84.37 -149.65 13 1 CYS B 128 ? ? 0.97 95.77 14 1 THR B 131 ? ? -60.34 94.45 15 1 SER B 132 ? ? -148.59 56.07 16 1 SER B 185 ? ? -55.72 2.92 17 1 THR B 187 ? ? -69.34 21.53 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 14 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 15 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 71.11 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id PRO _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 14 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 116.75 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C B PRO 14 ? ? N B GLY 15 ? ? 0.19 2 1 C B PRO 126 ? ? N B GLY 127 ? ? 2.19 3 1 C B SER 134 ? ? N B SER 135 ? ? 2.32 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 229 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE At the time of processing, this sequence of chain A and chain B have not yet been deposited in a sequence database. ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MAG C1 C N R 230 MAG C2 C N R 231 MAG C3 C N R 232 MAG C4 C N S 233 MAG C5 C N R 234 MAG C6 C N N 235 MAG C7 C N N 236 MAG C8 C N N 237 MAG N2 N N N 238 MAG O1 O N N 239 MAG O3 O N N 240 MAG O4 O N N 241 MAG O5 O N N 242 MAG O6 O N N 243 MAG O7 O N N 244 MAG CM C N N 245 MAG H1 H N N 246 MAG H2 H N N 247 MAG H3 H N N 248 MAG H4 H N N 249 MAG H5 H N N 250 MAG H61 H N N 251 MAG H62 H N N 252 MAG H81 H N N 253 MAG H82 H N N 254 MAG H83 H N N 255 MAG HN2 H N N 256 MAG HO3 H N N 257 MAG HO4 H N N 258 MAG HO6 H N N 259 MAG HM1 H N N 260 MAG HM2 H N N 261 MAG HM3 H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 RAE C1 C N R 323 RAE C2 C N N 324 RAE C3 C N S 325 RAE O3 O N N 326 RAE C4 C N R 327 RAE O4 O N N 328 RAE C5 C N S 329 RAE O5 O N N 330 RAE C6 C N N 331 RAE O1 O N N 332 RAE H1 H N N 333 RAE H21 H N N 334 RAE H22 H N N 335 RAE H3 H N N 336 RAE HO3 H N N 337 RAE H4 H N N 338 RAE HO4 H N N 339 RAE H5 H N N 340 RAE H61 H N N 341 RAE H62 H N N 342 RAE H63 H N N 343 RAE HO1 H N N 344 RAM C1 C N R 345 RAM C2 C N R 346 RAM C3 C N R 347 RAM C4 C N R 348 RAM C5 C N S 349 RAM C6 C N N 350 RAM O1 O N N 351 RAM O2 O N N 352 RAM O3 O N N 353 RAM O4 O N N 354 RAM O5 O N N 355 RAM H1 H N N 356 RAM H2 H N N 357 RAM H3 H N N 358 RAM H4 H N N 359 RAM H5 H N N 360 RAM H61 H N N 361 RAM H62 H N N 362 RAM H63 H N N 363 RAM HO1 H N N 364 RAM HO2 H N N 365 RAM HO3 H N N 366 RAM HO4 H N N 367 SER N N N N 368 SER CA C N S 369 SER C C N N 370 SER O O N N 371 SER CB C N N 372 SER OG O N N 373 SER OXT O N N 374 SER H H N N 375 SER H2 H N N 376 SER HA H N N 377 SER HB2 H N N 378 SER HB3 H N N 379 SER HG H N N 380 SER HXT H N N 381 THR N N N N 382 THR CA C N S 383 THR C C N N 384 THR O O N N 385 THR CB C N R 386 THR OG1 O N N 387 THR CG2 C N N 388 THR OXT O N N 389 THR H H N N 390 THR H2 H N N 391 THR HA H N N 392 THR HB H N N 393 THR HG1 H N N 394 THR HG21 H N N 395 THR HG22 H N N 396 THR HG23 H N N 397 THR HXT H N N 398 TRP N N N N 399 TRP CA C N S 400 TRP C C N N 401 TRP O O N N 402 TRP CB C N N 403 TRP CG C Y N 404 TRP CD1 C Y N 405 TRP CD2 C Y N 406 TRP NE1 N Y N 407 TRP CE2 C Y N 408 TRP CE3 C Y N 409 TRP CZ2 C Y N 410 TRP CZ3 C Y N 411 TRP CH2 C Y N 412 TRP OXT O N N 413 TRP H H N N 414 TRP H2 H N N 415 TRP HA H N N 416 TRP HB2 H N N 417 TRP HB3 H N N 418 TRP HD1 H N N 419 TRP HE1 H N N 420 TRP HE3 H N N 421 TRP HZ2 H N N 422 TRP HZ3 H N N 423 TRP HH2 H N N 424 TRP HXT H N N 425 TYR N N N N 426 TYR CA C N S 427 TYR C C N N 428 TYR O O N N 429 TYR CB C N N 430 TYR CG C Y N 431 TYR CD1 C Y N 432 TYR CD2 C Y N 433 TYR CE1 C Y N 434 TYR CE2 C Y N 435 TYR CZ C Y N 436 TYR OH O N N 437 TYR OXT O N N 438 TYR H H N N 439 TYR H2 H N N 440 TYR HA H N N 441 TYR HB2 H N N 442 TYR HB3 H N N 443 TYR HD1 H N N 444 TYR HD2 H N N 445 TYR HE1 H N N 446 TYR HE2 H N N 447 TYR HH H N N 448 TYR HXT H N N 449 VAL N N N N 450 VAL CA C N S 451 VAL C C N N 452 VAL O O N N 453 VAL CB C N N 454 VAL CG1 C N N 455 VAL CG2 C N N 456 VAL OXT O N N 457 VAL H H N N 458 VAL H2 H N N 459 VAL HA H N N 460 VAL HB H N N 461 VAL HG11 H N N 462 VAL HG12 H N N 463 VAL HG13 H N N 464 VAL HG21 H N N 465 VAL HG22 H N N 466 VAL HG23 H N N 467 VAL HXT H N N 468 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MAG C1 C2 sing N N 218 MAG C1 O1 sing N N 219 MAG C1 O5 sing N N 220 MAG C1 H1 sing N N 221 MAG C2 C3 sing N N 222 MAG C2 N2 sing N N 223 MAG C2 H2 sing N N 224 MAG C3 C4 sing N N 225 MAG C3 O3 sing N N 226 MAG C3 H3 sing N N 227 MAG C4 C5 sing N N 228 MAG C4 O4 sing N N 229 MAG C4 H4 sing N N 230 MAG C5 C6 sing N N 231 MAG C5 O5 sing N N 232 MAG C5 H5 sing N N 233 MAG C6 O6 sing N N 234 MAG C6 H61 sing N N 235 MAG C6 H62 sing N N 236 MAG C7 C8 sing N N 237 MAG C7 N2 sing N N 238 MAG C7 O7 doub N N 239 MAG C8 H81 sing N N 240 MAG C8 H82 sing N N 241 MAG C8 H83 sing N N 242 MAG N2 HN2 sing N N 243 MAG O1 CM sing N N 244 MAG O3 HO3 sing N N 245 MAG O4 HO4 sing N N 246 MAG O6 HO6 sing N N 247 MAG CM HM1 sing N N 248 MAG CM HM2 sing N N 249 MAG CM HM3 sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 PHE N CA sing N N 270 PHE N H sing N N 271 PHE N H2 sing N N 272 PHE CA C sing N N 273 PHE CA CB sing N N 274 PHE CA HA sing N N 275 PHE C O doub N N 276 PHE C OXT sing N N 277 PHE CB CG sing N N 278 PHE CB HB2 sing N N 279 PHE CB HB3 sing N N 280 PHE CG CD1 doub Y N 281 PHE CG CD2 sing Y N 282 PHE CD1 CE1 sing Y N 283 PHE CD1 HD1 sing N N 284 PHE CD2 CE2 doub Y N 285 PHE CD2 HD2 sing N N 286 PHE CE1 CZ doub Y N 287 PHE CE1 HE1 sing N N 288 PHE CE2 CZ sing Y N 289 PHE CE2 HE2 sing N N 290 PHE CZ HZ sing N N 291 PHE OXT HXT sing N N 292 PRO N CA sing N N 293 PRO N CD sing N N 294 PRO N H sing N N 295 PRO CA C sing N N 296 PRO CA CB sing N N 297 PRO CA HA sing N N 298 PRO C O doub N N 299 PRO C OXT sing N N 300 PRO CB CG sing N N 301 PRO CB HB2 sing N N 302 PRO CB HB3 sing N N 303 PRO CG CD sing N N 304 PRO CG HG2 sing N N 305 PRO CG HG3 sing N N 306 PRO CD HD2 sing N N 307 PRO CD HD3 sing N N 308 PRO OXT HXT sing N N 309 RAE C1 C2 sing N N 310 RAE C1 O5 sing N N 311 RAE C1 O1 sing N N 312 RAE C2 C3 sing N N 313 RAE C3 O3 sing N N 314 RAE C3 C4 sing N N 315 RAE C4 O4 sing N N 316 RAE C4 C5 sing N N 317 RAE C5 O5 sing N N 318 RAE C5 C6 sing N N 319 RAE C1 H1 sing N N 320 RAE C2 H21 sing N N 321 RAE C2 H22 sing N N 322 RAE C3 H3 sing N N 323 RAE O3 HO3 sing N N 324 RAE C4 H4 sing N N 325 RAE O4 HO4 sing N N 326 RAE C5 H5 sing N N 327 RAE C6 H61 sing N N 328 RAE C6 H62 sing N N 329 RAE C6 H63 sing N N 330 RAE O1 HO1 sing N N 331 RAM C1 C2 sing N N 332 RAM C1 O1 sing N N 333 RAM C1 O5 sing N N 334 RAM C1 H1 sing N N 335 RAM C2 C3 sing N N 336 RAM C2 O2 sing N N 337 RAM C2 H2 sing N N 338 RAM C3 C4 sing N N 339 RAM C3 O3 sing N N 340 RAM C3 H3 sing N N 341 RAM C4 C5 sing N N 342 RAM C4 O4 sing N N 343 RAM C4 H4 sing N N 344 RAM C5 C6 sing N N 345 RAM C5 O5 sing N N 346 RAM C5 H5 sing N N 347 RAM C6 H61 sing N N 348 RAM C6 H62 sing N N 349 RAM C6 H63 sing N N 350 RAM O1 HO1 sing N N 351 RAM O2 HO2 sing N N 352 RAM O3 HO3 sing N N 353 RAM O4 HO4 sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TRP N CA sing N N 384 TRP N H sing N N 385 TRP N H2 sing N N 386 TRP CA C sing N N 387 TRP CA CB sing N N 388 TRP CA HA sing N N 389 TRP C O doub N N 390 TRP C OXT sing N N 391 TRP CB CG sing N N 392 TRP CB HB2 sing N N 393 TRP CB HB3 sing N N 394 TRP CG CD1 doub Y N 395 TRP CG CD2 sing Y N 396 TRP CD1 NE1 sing Y N 397 TRP CD1 HD1 sing N N 398 TRP CD2 CE2 doub Y N 399 TRP CD2 CE3 sing Y N 400 TRP NE1 CE2 sing Y N 401 TRP NE1 HE1 sing N N 402 TRP CE2 CZ2 sing Y N 403 TRP CE3 CZ3 doub Y N 404 TRP CE3 HE3 sing N N 405 TRP CZ2 CH2 doub Y N 406 TRP CZ2 HZ2 sing N N 407 TRP CZ3 CH2 sing Y N 408 TRP CZ3 HZ3 sing N N 409 TRP CH2 HH2 sing N N 410 TRP OXT HXT sing N N 411 TYR N CA sing N N 412 TYR N H sing N N 413 TYR N H2 sing N N 414 TYR CA C sing N N 415 TYR CA CB sing N N 416 TYR CA HA sing N N 417 TYR C O doub N N 418 TYR C OXT sing N N 419 TYR CB CG sing N N 420 TYR CB HB2 sing N N 421 TYR CB HB3 sing N N 422 TYR CG CD1 doub Y N 423 TYR CG CD2 sing Y N 424 TYR CD1 CE1 sing Y N 425 TYR CD1 HD1 sing N N 426 TYR CD2 CE2 doub Y N 427 TYR CD2 HD2 sing N N 428 TYR CE1 CZ doub Y N 429 TYR CE1 HE1 sing N N 430 TYR CE2 CZ sing Y N 431 TYR CE2 HE2 sing N N 432 TYR CZ OH sing N N 433 TYR OH HH sing N N 434 TYR OXT HXT sing N N 435 VAL N CA sing N N 436 VAL N H sing N N 437 VAL N H2 sing N N 438 VAL CA C sing N N 439 VAL CA CB sing N N 440 VAL CA HA sing N N 441 VAL C O doub N N 442 VAL C OXT sing N N 443 VAL CB CG1 sing N N 444 VAL CB CG2 sing N N 445 VAL CB HB sing N N 446 VAL CG1 HG11 sing N N 447 VAL CG1 HG12 sing N N 448 VAL CG1 HG13 sing N N 449 VAL CG2 HG21 sing N N 450 VAL CG2 HG22 sing N N 451 VAL CG2 HG23 sing N N 452 VAL OXT HXT sing N N 453 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 MAG 1 n 3 RAE 2 n 3 RAM 3 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MCP _pdbx_initial_refinement_model.details 'PDB ENTRY 1MCP' # _atom_sites.entry_id 1M7D _atom_sites.fract_transf_matrix[1][1] 0.014085 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014085 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005051 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_