HEADER TRANSFERASE 19-JUL-02 1M7H TITLE CRYSTAL STRUCTURE OF APS KINASE FROM PENICILLIUM CHRYSOGENUM: TITLE 2 STRUCTURE WITH APS SOAKED OUT OF ONE DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLYLSULFATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: APS KINASE, ADENOSINE-5'PHOSPHOSULFATE KINASE, ATP COMPND 5 ADENOSINE-5'-PHOSPHOSULFATE 3'- PHOSPHOTRANSFERASE; COMPND 6 EC: 2.7.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CHRYSOGENUM; SOURCE 3 ORGANISM_TAXID: 5076; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS APS KINASE, ADENYLYLSULFATE KINASE, TRANSFERASE, SULFATE METABOLISM, KEYWDS 2 NUCLEOTIDE 2 KINASE EXPDTA X-RAY DIFFRACTION AUTHOR E.B.LANSDON,I.H.SEGE,A.J.FISHER REVDAT 4 03-APR-24 1M7H 1 REMARK REVDAT 3 14-FEB-24 1M7H 1 REMARK REVDAT 2 24-FEB-09 1M7H 1 VERSN REVDAT 1 27-NOV-02 1M7H 0 JRNL AUTH E.B.LANSDON,I.H.SEGEL,A.J.FISHER JRNL TITL LIGAND-INDUCED STRUCTURAL CHANGES IN ADENOSINE JRNL TITL 2 5'-PHOSPHOSULFATE KINASE FROM PENICILLIUM CHRYSOGENUM. JRNL REF BIOCHEMISTRY V. 41 13672 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12427029 JRNL DOI 10.1021/BI026556B REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 63077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3134 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8173 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 426 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.86000 REMARK 3 B22 (A**2) : -6.96000 REMARK 3 B33 (A**2) : -3.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 54.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : LIGANDS.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : ION.TOP REMARK 3 TOPOLOGY FILE 2 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : LIGANDS.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 621412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 9.610 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : 0.32900 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: TERNARY STRUCTURE OF APS KINASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA MONOBASIC PHOSPHATE, K DIBASIC REMARK 280 PHOSPHATE, SUCCINATE, PH 4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.80050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.33850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.84400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.33850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.80050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.84400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 41.84400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.33850 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -233.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 41.80050 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 41.84400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 138.67700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 LYS A 210 REMARK 465 GLU A 211 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 123 REMARK 465 THR B 124 REMARK 465 PRO B 125 REMARK 465 GLY B 126 REMARK 465 GLU B 127 REMARK 465 GLU B 128 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 ASN C 4 REMARK 465 ILE C 5 REMARK 465 LYS C 210 REMARK 465 GLU C 211 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 ASN D 4 REMARK 465 ILE D 5 REMARK 465 ALA D 123 REMARK 465 THR D 124 REMARK 465 PRO D 125 REMARK 465 GLY D 126 REMARK 465 GLU D 127 REMARK 465 GLU D 128 REMARK 465 LYS D 210 REMARK 465 GLU D 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL B 122 CG1 CG2 REMARK 470 THR B 129 OG1 CG2 REMARK 470 ARG C 54 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 54 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 107 61.03 35.26 REMARK 500 PRO A 125 88.68 -57.73 REMARK 500 ASP A 149 54.98 33.16 REMARK 500 GLU A 159 26.32 -142.30 REMARK 500 GLU A 164 90.13 27.94 REMARK 500 ASN A 184 49.08 -76.89 REMARK 500 ASP B 149 57.82 27.59 REMARK 500 ILE B 168 -56.84 -123.76 REMARK 500 ASN B 184 48.93 -75.26 REMARK 500 ARG C 51 -71.46 -74.86 REMARK 500 SER C 107 64.98 33.70 REMARK 500 ASP C 149 59.03 31.26 REMARK 500 ILE C 168 -53.83 -120.36 REMARK 500 ASN C 184 44.23 -76.41 REMARK 500 ASP D 61 -166.45 -121.31 REMARK 500 SER D 76 -172.35 -65.76 REMARK 500 ASP D 149 58.57 25.16 REMARK 500 ILE D 168 -56.64 -121.04 REMARK 500 ALA D 208 -96.37 -46.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX D 1306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D6J RELATED DB: PDB REMARK 900 APO CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1M7G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APS KINASE FROM PENICILLIUM CHRYSOGENUM: REMARK 900 TERNARY STRUCTURE WITH ADP AND APS REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 54 IN ALL OF THE SUBUNITS IS LISTED AS ARG REMARK 999 IN THE DATABASE SEQUENCE (SWISSPROT ACCESSION Q12657). REMARK 999 ACCORDING TO THE AUTHOR, THE GENE HAS BEEN RESEQUENCED REMARK 999 AND RESIDUE 54 IS ACTUALLY GLY. DBREF 1M7H A 1 211 UNP Q12657 KAPS_PENCH 1 211 DBREF 1M7H B 1 211 UNP Q12657 KAPS_PENCH 1 211 DBREF 1M7H C 1 211 UNP Q12657 KAPS_PENCH 1 211 DBREF 1M7H D 1 211 UNP Q12657 KAPS_PENCH 1 211 SEQRES 1 A 211 MET SER THR ASN ILE THR PHE HIS ALA SER ALA LEU THR SEQRES 2 A 211 ARG SER GLU ARG THR GLU LEU ARG ASN GLN ARG GLY LEU SEQRES 3 A 211 THR ILE TRP LEU THR GLY LEU SER ALA SER GLY LYS SER SEQRES 4 A 211 THR LEU ALA VAL GLU LEU GLU HIS GLN LEU VAL ARG ASP SEQRES 5 A 211 ARG ARG VAL HIS ALA TYR ARG LEU ASP GLY ASP ASN ILE SEQRES 6 A 211 ARG PHE GLY LEU ASN LYS ASP LEU GLY PHE SER GLU ALA SEQRES 7 A 211 ASP ARG ASN GLU ASN ILE ARG ARG ILE ALA GLU VAL ALA SEQRES 8 A 211 LYS LEU PHE ALA ASP SER ASN SER ILE ALA ILE THR SER SEQRES 9 A 211 PHE ILE SER PRO TYR ARG LYS ASP ARG ASP THR ALA ARG SEQRES 10 A 211 GLN LEU HIS GLU VAL ALA THR PRO GLY GLU GLU THR GLY SEQRES 11 A 211 LEU PRO PHE VAL GLU VAL TYR VAL ASP VAL PRO VAL GLU SEQRES 12 A 211 VAL ALA GLU GLN ARG ASP PRO LYS GLY LEU TYR LYS LYS SEQRES 13 A 211 ALA ARG GLU GLY VAL ILE LYS GLU PHE THR GLY ILE SER SEQRES 14 A 211 ALA PRO TYR GLU ALA PRO ALA ASN PRO GLU VAL HIS VAL SEQRES 15 A 211 LYS ASN TYR GLU LEU PRO VAL GLN ASP ALA VAL LYS GLN SEQRES 16 A 211 ILE ILE ASP TYR LEU ASP THR LYS GLY TYR LEU PRO ALA SEQRES 17 A 211 LYS LYS GLU SEQRES 1 B 211 MET SER THR ASN ILE THR PHE HIS ALA SER ALA LEU THR SEQRES 2 B 211 ARG SER GLU ARG THR GLU LEU ARG ASN GLN ARG GLY LEU SEQRES 3 B 211 THR ILE TRP LEU THR GLY LEU SER ALA SER GLY LYS SER SEQRES 4 B 211 THR LEU ALA VAL GLU LEU GLU HIS GLN LEU VAL ARG ASP SEQRES 5 B 211 ARG ARG VAL HIS ALA TYR ARG LEU ASP GLY ASP ASN ILE SEQRES 6 B 211 ARG PHE GLY LEU ASN LYS ASP LEU GLY PHE SER GLU ALA SEQRES 7 B 211 ASP ARG ASN GLU ASN ILE ARG ARG ILE ALA GLU VAL ALA SEQRES 8 B 211 LYS LEU PHE ALA ASP SER ASN SER ILE ALA ILE THR SER SEQRES 9 B 211 PHE ILE SER PRO TYR ARG LYS ASP ARG ASP THR ALA ARG SEQRES 10 B 211 GLN LEU HIS GLU VAL ALA THR PRO GLY GLU GLU THR GLY SEQRES 11 B 211 LEU PRO PHE VAL GLU VAL TYR VAL ASP VAL PRO VAL GLU SEQRES 12 B 211 VAL ALA GLU GLN ARG ASP PRO LYS GLY LEU TYR LYS LYS SEQRES 13 B 211 ALA ARG GLU GLY VAL ILE LYS GLU PHE THR GLY ILE SER SEQRES 14 B 211 ALA PRO TYR GLU ALA PRO ALA ASN PRO GLU VAL HIS VAL SEQRES 15 B 211 LYS ASN TYR GLU LEU PRO VAL GLN ASP ALA VAL LYS GLN SEQRES 16 B 211 ILE ILE ASP TYR LEU ASP THR LYS GLY TYR LEU PRO ALA SEQRES 17 B 211 LYS LYS GLU SEQRES 1 C 211 MET SER THR ASN ILE THR PHE HIS ALA SER ALA LEU THR SEQRES 2 C 211 ARG SER GLU ARG THR GLU LEU ARG ASN GLN ARG GLY LEU SEQRES 3 C 211 THR ILE TRP LEU THR GLY LEU SER ALA SER GLY LYS SER SEQRES 4 C 211 THR LEU ALA VAL GLU LEU GLU HIS GLN LEU VAL ARG ASP SEQRES 5 C 211 ARG ARG VAL HIS ALA TYR ARG LEU ASP GLY ASP ASN ILE SEQRES 6 C 211 ARG PHE GLY LEU ASN LYS ASP LEU GLY PHE SER GLU ALA SEQRES 7 C 211 ASP ARG ASN GLU ASN ILE ARG ARG ILE ALA GLU VAL ALA SEQRES 8 C 211 LYS LEU PHE ALA ASP SER ASN SER ILE ALA ILE THR SER SEQRES 9 C 211 PHE ILE SER PRO TYR ARG LYS ASP ARG ASP THR ALA ARG SEQRES 10 C 211 GLN LEU HIS GLU VAL ALA THR PRO GLY GLU GLU THR GLY SEQRES 11 C 211 LEU PRO PHE VAL GLU VAL TYR VAL ASP VAL PRO VAL GLU SEQRES 12 C 211 VAL ALA GLU GLN ARG ASP PRO LYS GLY LEU TYR LYS LYS SEQRES 13 C 211 ALA ARG GLU GLY VAL ILE LYS GLU PHE THR GLY ILE SER SEQRES 14 C 211 ALA PRO TYR GLU ALA PRO ALA ASN PRO GLU VAL HIS VAL SEQRES 15 C 211 LYS ASN TYR GLU LEU PRO VAL GLN ASP ALA VAL LYS GLN SEQRES 16 C 211 ILE ILE ASP TYR LEU ASP THR LYS GLY TYR LEU PRO ALA SEQRES 17 C 211 LYS LYS GLU SEQRES 1 D 211 MET SER THR ASN ILE THR PHE HIS ALA SER ALA LEU THR SEQRES 2 D 211 ARG SER GLU ARG THR GLU LEU ARG ASN GLN ARG GLY LEU SEQRES 3 D 211 THR ILE TRP LEU THR GLY LEU SER ALA SER GLY LYS SER SEQRES 4 D 211 THR LEU ALA VAL GLU LEU GLU HIS GLN LEU VAL ARG ASP SEQRES 5 D 211 ARG ARG VAL HIS ALA TYR ARG LEU ASP GLY ASP ASN ILE SEQRES 6 D 211 ARG PHE GLY LEU ASN LYS ASP LEU GLY PHE SER GLU ALA SEQRES 7 D 211 ASP ARG ASN GLU ASN ILE ARG ARG ILE ALA GLU VAL ALA SEQRES 8 D 211 LYS LEU PHE ALA ASP SER ASN SER ILE ALA ILE THR SER SEQRES 9 D 211 PHE ILE SER PRO TYR ARG LYS ASP ARG ASP THR ALA ARG SEQRES 10 D 211 GLN LEU HIS GLU VAL ALA THR PRO GLY GLU GLU THR GLY SEQRES 11 D 211 LEU PRO PHE VAL GLU VAL TYR VAL ASP VAL PRO VAL GLU SEQRES 12 D 211 VAL ALA GLU GLN ARG ASP PRO LYS GLY LEU TYR LYS LYS SEQRES 13 D 211 ALA ARG GLU GLY VAL ILE LYS GLU PHE THR GLY ILE SER SEQRES 14 D 211 ALA PRO TYR GLU ALA PRO ALA ASN PRO GLU VAL HIS VAL SEQRES 15 D 211 LYS ASN TYR GLU LEU PRO VAL GLN ASP ALA VAL LYS GLN SEQRES 16 D 211 ILE ILE ASP TYR LEU ASP THR LYS GLY TYR LEU PRO ALA SEQRES 17 D 211 LYS LYS GLU HET SO4 A1002 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1009 5 HET SO4 A1012 5 HET ADP A1301 27 HET SO4 B1003 5 HET SO4 B1007 5 HET ADP B1302 27 HET ADX B1303 27 HET SO4 C1001 5 HET SO4 C1004 5 HET SO4 C1008 5 HET SO4 C1011 5 HET ADP C1304 27 HET SO4 D1010 5 HET ADP D1305 27 HET ADX D1306 27 HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ADX ADENOSINE-5'-PHOSPHOSULFATE FORMUL 5 SO4 12(O4 S 2-) FORMUL 10 ADP 4(C10 H15 N5 O10 P2) FORMUL 14 ADX 2(C10 H14 N5 O10 P S) FORMUL 23 HOH *499(H2 O) HELIX 1 1 THR A 13 ASN A 22 1 10 HELIX 2 2 GLY A 37 ARG A 51 1 15 HELIX 3 3 ASP A 61 ARG A 66 1 6 HELIX 4 4 SER A 76 SER A 97 1 22 HELIX 5 5 TYR A 109 VAL A 122 1 14 HELIX 6 6 PRO A 141 ASP A 149 1 9 HELIX 7 7 GLY A 152 ARG A 158 1 7 HELIX 8 8 PRO A 188 LYS A 203 1 16 HELIX 9 9 THR B 13 ASN B 22 1 10 HELIX 10 10 GLY B 37 ASP B 52 1 16 HELIX 11 11 ASP B 61 PHE B 67 1 7 HELIX 12 12 SER B 76 SER B 97 1 22 HELIX 13 13 TYR B 109 VAL B 122 1 14 HELIX 14 14 PRO B 141 ASP B 149 1 9 HELIX 15 15 GLY B 152 GLU B 159 1 8 HELIX 16 16 PRO B 188 LYS B 203 1 16 HELIX 17 17 THR C 13 ASN C 22 1 10 HELIX 18 18 GLY C 37 ARG C 51 1 15 HELIX 19 19 GLY C 62 ARG C 66 1 5 HELIX 20 20 SER C 76 SER C 97 1 22 HELIX 21 21 TYR C 109 VAL C 122 1 14 HELIX 22 22 PRO C 141 ASP C 149 1 9 HELIX 23 23 GLY C 152 GLU C 159 1 8 HELIX 24 24 PRO C 188 LYS C 203 1 16 HELIX 25 25 THR D 13 ASN D 22 1 10 HELIX 26 26 GLY D 37 ARG D 51 1 15 HELIX 27 27 ASP D 61 PHE D 67 1 7 HELIX 28 28 SER D 76 SER D 97 1 22 HELIX 29 29 TYR D 109 VAL D 122 1 14 HELIX 30 30 PRO D 141 ASP D 149 1 9 HELIX 31 31 GLY D 152 GLU D 159 1 8 HELIX 32 32 PRO D 188 LYS D 203 1 16 SHEET 1 A 5 ALA A 57 LEU A 60 0 SHEET 2 A 5 ILE A 100 SER A 104 1 O ILE A 102 N LEU A 60 SHEET 3 A 5 LEU A 26 THR A 31 1 N ILE A 28 O ALA A 101 SHEET 4 A 5 PHE A 133 ASP A 139 1 O VAL A 134 N THR A 27 SHEET 5 A 5 VAL A 180 LYS A 183 1 O VAL A 182 N TYR A 137 SHEET 1 B 5 ALA B 57 LEU B 60 0 SHEET 2 B 5 ILE B 100 SER B 104 1 O ILE B 102 N LEU B 60 SHEET 3 B 5 LEU B 26 THR B 31 1 N ILE B 28 O ALA B 101 SHEET 4 B 5 PHE B 133 ASP B 139 1 O VAL B 136 N TRP B 29 SHEET 5 B 5 VAL B 180 LYS B 183 1 O VAL B 182 N ASP B 139 SHEET 1 C 5 ALA C 57 ASP C 61 0 SHEET 2 C 5 ILE C 100 SER C 104 1 O ILE C 102 N LEU C 60 SHEET 3 C 5 LEU C 26 THR C 31 1 N ILE C 28 O ALA C 101 SHEET 4 C 5 PHE C 133 ASP C 139 1 O VAL C 138 N THR C 31 SHEET 5 C 5 VAL C 180 LYS C 183 1 O VAL C 182 N ASP C 139 SHEET 1 D 5 ALA D 57 LEU D 60 0 SHEET 2 D 5 ILE D 100 SER D 104 1 O ILE D 102 N LEU D 60 SHEET 3 D 5 LEU D 26 THR D 31 1 N ILE D 28 O ALA D 101 SHEET 4 D 5 PHE D 133 ASP D 139 1 O VAL D 138 N THR D 31 SHEET 5 D 5 VAL D 180 LYS D 183 1 O VAL D 180 N TYR D 137 SITE 1 AC1 6 ARG C 80 PHE C 105 ILE C 106 HOH C1328 SITE 2 AC1 6 HOH C1337 HOH C1342 SITE 1 AC2 8 ARG A 66 ARG A 80 PHE A 105 ILE A 106 SITE 2 AC2 8 HOH A1311 HOH A1312 HOH A1337 HOH A1367 SITE 1 AC3 6 THR B 13 ARG B 14 SER B 15 THR D 13 SITE 2 AC3 6 ARG D 14 SER D 15 SITE 1 AC4 4 HIS C 8 ALA C 9 SER C 10 HOH C1379 SITE 1 AC5 6 ARG A 110 PRO A 175 ALA A 176 ASN A 177 SITE 2 AC5 6 HOH A1310 HOH A1376 SITE 1 AC6 4 HIS A 8 ALA A 9 SER A 10 HOH B1359 SITE 1 AC7 4 HIS B 8 ALA B 9 SER B 10 ASP C 63 SITE 1 AC8 6 ARG C 110 PRO C 175 ALA C 176 ASN C 177 SITE 2 AC8 6 HOH C1310 HOH C1363 SITE 1 AC9 6 TYR A 172 GLU A 173 ALA A 174 HOH A1398 SITE 2 AC9 6 HOH A1415 LYS D 156 SITE 1 BC1 5 ASP A 63 PHE D 7 HIS D 8 ALA D 9 SITE 2 BC1 5 SER D 10 SITE 1 BC2 4 SER B 76 SER C 76 GLU C 77 HOH C1349 SITE 1 BC3 2 GLU A 77 HOH A1386 SITE 1 BC4 21 LEU A 33 ALA A 35 SER A 36 GLY A 37 SITE 2 BC4 21 LYS A 38 SER A 39 THR A 40 ARG A 148 SITE 3 BC4 21 PRO A 150 ASN A 184 LEU A 187 VAL A 189 SITE 4 BC4 21 HOH A1316 HOH A1332 HOH A1333 HOH A1351 SITE 5 BC4 21 HOH A1369 ARG C 148 ADP C1304 HOH C1311 SITE 6 BC4 21 HOH C1364 SITE 1 BC5 21 LEU B 33 ALA B 35 SER B 36 GLY B 37 SITE 2 BC5 21 LYS B 38 SER B 39 THR B 40 ARG B 148 SITE 3 BC5 21 PRO B 150 LEU B 187 HOH B1317 HOH B1330 SITE 4 BC5 21 HOH B1341 HOH B1343 HOH B1350 HOH B1352 SITE 5 BC5 21 HOH B1382 HOH B1390 HOH B1392 HOH B1395 SITE 6 BC5 21 GLU D 186 SITE 1 BC6 17 SER B 34 ARG B 66 PHE B 75 ARG B 80 SITE 2 BC6 17 ASN B 83 ILE B 84 PHE B 105 ILE B 106 SITE 3 BC6 17 SER B 107 PRO B 108 LEU B 153 LYS B 163 SITE 4 BC6 17 GLU B 164 THR B 166 HOH B1341 HOH B1387 SITE 5 BC6 17 HOH B1434 SITE 1 BC7 20 ARG A 148 ADP A1301 LEU C 33 ALA C 35 SITE 2 BC7 20 SER C 36 GLY C 37 LYS C 38 SER C 39 SITE 3 BC7 20 THR C 40 ARG C 148 ASN C 184 LEU C 187 SITE 4 BC7 20 HOH C1311 HOH C1330 HOH C1338 HOH C1340 SITE 5 BC7 20 HOH C1343 HOH C1350 HOH C1364 HOH C1413 SITE 1 BC8 21 GLU B 186 LEU D 33 ALA D 35 SER D 36 SITE 2 BC8 21 GLY D 37 LYS D 38 SER D 39 THR D 40 SITE 3 BC8 21 ARG D 148 PRO D 150 ASN D 184 LEU D 187 SITE 4 BC8 21 HOH D1327 HOH D1335 HOH D1336 HOH D1337 SITE 5 BC8 21 HOH D1351 HOH D1353 HOH D1359 HOH D1381 SITE 6 BC8 21 HOH D1402 SITE 1 BC9 19 SER D 34 ARG D 66 PHE D 75 ARG D 80 SITE 2 BC9 19 ASN D 83 ILE D 84 PHE D 105 ILE D 106 SITE 3 BC9 19 SER D 107 PRO D 108 LEU D 153 ILE D 162 SITE 4 BC9 19 LYS D 163 GLU D 164 PHE D 165 THR D 166 SITE 5 BC9 19 HOH D1337 HOH D1346 HOH D1358 CRYST1 83.601 83.688 138.677 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007211 0.00000