data_1M8R # _entry.id 1M8R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1M8R pdb_00001m8r 10.2210/pdb1m8r/pdb RCSB RCSB016737 ? ? WWPDB D_1000016737 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-11 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 5 'Structure model' 1 4 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M8R _pdbx_database_status.recvd_initial_deposition_date 2002-07-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PSJ '1PSJ contains the same protein at 2.01 Resolution' unspecified PDB 1BK9 '1BK9 contains the same protein Modified By Pbpb' unspecified PDB 1M8S '1M8S contains the same protein, crystal grown at pH 5.9' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, S.' 1 'Gu, L.' 2 'Zhou, Y.' 3 'Lin, Z.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structures of cadmium-binding acidic phospholipase A(2) from the venom of Agkistrodon halys Pallas at 1.9A resolutio' Biochem.Biophys.Res.Commun. 300 271 277 2003 BBRCA9 US 0006-291X 0146 ? 12504079 '10.1016/S0006-291X(02)02833-4' 1 'Crystal structure of an acidic phospholipase A2 from the venom of Agkistrodon halys pallas at 2.0 A resolution' J.MOL.BIOL. 255 669 676 1996 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1996.0054 2 'Structure of a snake venom phospholipase A2 modified by p-bromo-phenacyl-bromide' TOXICON 36 875 886 1998 TOXIA6 UK 0041-0101 2043 ? ? '10.1016/S0041-0101(97)00169-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, S.' 1 ? primary 'Gu, L.' 2 ? primary 'Jiang, T.' 3 ? primary 'Zhou, Y.' 4 ? primary 'Lin, Z.' 5 ? 1 'Wang, X.' 6 ? 1 'Yang, J.' 7 ? 1 'Gui, L.' 8 ? 1 'Lin, Z.' 9 ? 1 'Chen, Y.' 10 ? 1 'Zhou, Y.' 11 ? 2 'Zhao, H.' 12 ? 2 'Tang, L.' 13 ? 2 'Wang, X.' 14 ? 2 'Zhou, Y.' 15 ? 2 'Lin, Z.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'phospholipase A2' 13956.688 1 3.1.1.4 ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 3 non-polymer syn 1,4-BUTANEDIOL 90.121 2 ? ? ? ? 4 water nat water 18.015 81 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLVQFETLIMKVAKKSGMQWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLNTYNDKKYWAFGAKNCPQEESEPC ; _entity_poly.pdbx_seq_one_letter_code_can ;SLVQFETLIMKVAKKSGMQWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLNTYNDKKYWAFGAKNCPQEESEPC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 1,4-BUTANEDIOL BU1 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 VAL n 1 4 GLN n 1 5 PHE n 1 6 GLU n 1 7 THR n 1 8 LEU n 1 9 ILE n 1 10 MET n 1 11 LYS n 1 12 VAL n 1 13 ALA n 1 14 LYS n 1 15 LYS n 1 16 SER n 1 17 GLY n 1 18 MET n 1 19 GLN n 1 20 TRP n 1 21 TYR n 1 22 SER n 1 23 ASN n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 TYR n 1 28 CYS n 1 29 GLY n 1 30 TRP n 1 31 GLY n 1 32 GLY n 1 33 GLN n 1 34 GLY n 1 35 ARG n 1 36 PRO n 1 37 GLN n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 PHE n 1 46 VAL n 1 47 HIS n 1 48 ASP n 1 49 CYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 LYS n 1 54 VAL n 1 55 THR n 1 56 GLY n 1 57 CYS n 1 58 ASP n 1 59 PRO n 1 60 LYS n 1 61 MET n 1 62 ASP n 1 63 VAL n 1 64 TYR n 1 65 SER n 1 66 PHE n 1 67 SER n 1 68 GLU n 1 69 GLU n 1 70 ASN n 1 71 GLY n 1 72 ASP n 1 73 ILE n 1 74 VAL n 1 75 CYS n 1 76 GLY n 1 77 GLY n 1 78 ASP n 1 79 ASP n 1 80 PRO n 1 81 CYS n 1 82 LYS n 1 83 LYS n 1 84 GLU n 1 85 ILE n 1 86 CYS n 1 87 GLU n 1 88 CYS n 1 89 ASP n 1 90 ARG n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 ILE n 1 95 CYS n 1 96 PHE n 1 97 ARG n 1 98 ASP n 1 99 ASN n 1 100 LEU n 1 101 ASN n 1 102 THR n 1 103 TYR n 1 104 ASN n 1 105 ASP n 1 106 LYS n 1 107 LYS n 1 108 TYR n 1 109 TRP n 1 110 ALA n 1 111 PHE n 1 112 GLY n 1 113 ALA n 1 114 LYS n 1 115 ASN n 1 116 CYS n 1 117 PRO n 1 118 GLN n 1 119 GLU n 1 120 GLU n 1 121 SER n 1 122 GLU n 1 123 PRO n 1 124 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'halys viper' _entity_src_nat.pdbx_organism_scientific 'Gloydius halys' _entity_src_nat.pdbx_ncbi_taxonomy_id 8714 _entity_src_nat.genus Gloydius _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion venom _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BU1 non-polymer . 1,4-BUTANEDIOL ? 'C4 H10 O2' 90.121 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 SER 16 17 17 SER SER A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 MET 18 19 19 MET MET A . n A 1 19 GLN 19 20 20 GLN GLN A . n A 1 20 TRP 20 21 21 TRP TRP A . n A 1 21 TYR 21 22 22 TYR TYR A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 ASN 23 24 24 ASN ASN A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 CYS 26 27 27 CYS CYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 TRP 30 31 31 TRP TRP A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 GLN 33 34 34 GLN GLN A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 GLN 37 38 38 GLN GLN A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 ALA 39 40 40 ALA ALA A . n A 1 40 THR 40 41 41 THR THR A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 CYS 43 44 44 CYS CYS A . n A 1 44 CYS 44 45 45 CYS CYS A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 HIS 47 48 48 HIS HIS A . n A 1 48 ASP 48 49 49 ASP ASP A . n A 1 49 CYS 49 50 50 CYS CYS A . n A 1 50 CYS 50 51 51 CYS CYS A . n A 1 51 TYR 51 52 52 TYR TYR A . n A 1 52 GLY 52 53 53 GLY GLY A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 VAL 54 55 55 VAL VAL A . n A 1 55 THR 55 56 56 THR THR A . n A 1 56 GLY 56 59 59 GLY GLY A . n A 1 57 CYS 57 61 61 CYS CYS A . n A 1 58 ASP 58 67 67 ASP ASP A . n A 1 59 PRO 59 68 68 PRO PRO A . n A 1 60 LYS 60 69 69 LYS LYS A . n A 1 61 MET 61 70 70 MET MET A . n A 1 62 ASP 62 71 71 ASP ASP A . n A 1 63 VAL 63 72 72 VAL VAL A . n A 1 64 TYR 64 73 73 TYR TYR A . n A 1 65 SER 65 74 74 SER SER A . n A 1 66 PHE 66 75 75 PHE PHE A . n A 1 67 SER 67 76 76 SER SER A . n A 1 68 GLU 68 77 77 GLU GLU A . n A 1 69 GLU 69 78 78 GLU GLU A . n A 1 70 ASN 70 79 79 ASN ASN A . n A 1 71 GLY 71 80 80 GLY GLY A . n A 1 72 ASP 72 81 81 ASP ASP A . n A 1 73 ILE 73 82 82 ILE ILE A . n A 1 74 VAL 74 83 83 VAL VAL A . n A 1 75 CYS 75 84 84 CYS CYS A . n A 1 76 GLY 76 85 85 GLY GLY A . n A 1 77 GLY 77 86 86 GLY GLY A . n A 1 78 ASP 78 88 88 ASP ASP A . n A 1 79 ASP 79 89 89 ASP ASP A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 CYS 81 91 91 CYS CYS A . n A 1 82 LYS 82 92 92 LYS LYS A . n A 1 83 LYS 83 93 93 LYS LYS A . n A 1 84 GLU 84 94 94 GLU GLU A . n A 1 85 ILE 85 95 95 ILE ILE A . n A 1 86 CYS 86 96 96 CYS CYS A . n A 1 87 GLU 87 97 97 GLU GLU A . n A 1 88 CYS 88 98 98 CYS CYS A . n A 1 89 ASP 89 99 99 ASP ASP A . n A 1 90 ARG 90 100 100 ARG ARG A . n A 1 91 ALA 91 101 101 ALA ALA A . n A 1 92 ALA 92 102 102 ALA ALA A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ILE 94 104 104 ILE ILE A . n A 1 95 CYS 95 105 105 CYS CYS A . n A 1 96 PHE 96 106 106 PHE PHE A . n A 1 97 ARG 97 107 107 ARG ARG A . n A 1 98 ASP 98 108 108 ASP ASP A . n A 1 99 ASN 99 109 109 ASN ASN A . n A 1 100 LEU 100 110 110 LEU LEU A . n A 1 101 ASN 101 111 111 ASN ASN A . n A 1 102 THR 102 112 112 THR THR A . n A 1 103 TYR 103 113 113 TYR TYR A . n A 1 104 ASN 104 114 114 ASN ASN A . n A 1 105 ASP 105 115 115 ASP ASP A . n A 1 106 LYS 106 116 116 LYS LYS A . n A 1 107 LYS 107 117 117 LYS LYS A . n A 1 108 TYR 108 118 118 TYR TYR A . n A 1 109 TRP 109 119 119 TRP TRP A . n A 1 110 ALA 110 120 120 ALA ALA A . n A 1 111 PHE 111 121 121 PHE PHE A . n A 1 112 GLY 112 122 122 GLY GLY A . n A 1 113 ALA 113 123 123 ALA ALA A . n A 1 114 LYS 114 124 124 LYS LYS A . n A 1 115 ASN 115 125 125 ASN ASN A . n A 1 116 CYS 116 126 126 CYS CYS A . n A 1 117 PRO 117 127 127 PRO PRO A . n A 1 118 GLN 118 128 128 GLN GLN A . n A 1 119 GLU 119 129 129 GLU GLU A . n A 1 120 GLU 120 130 130 GLU GLU A . n A 1 121 SER 121 131 131 SER SER A . n A 1 122 GLU 122 132 132 GLU GLU A . n A 1 123 PRO 123 133 133 PRO PRO A . n A 1 124 CYS 124 134 134 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 1001 1001 CD CD A . C 3 BU1 1 1002 1001 BU1 BU1 A . D 3 BU1 1 1003 1002 BU1 BU1 A . E 4 HOH 1 1004 1 HOH HOH A . E 4 HOH 2 1005 2 HOH HOH A . E 4 HOH 3 1006 3 HOH HOH A . E 4 HOH 4 1007 4 HOH HOH A . E 4 HOH 5 1008 5 HOH HOH A . E 4 HOH 6 1009 6 HOH HOH A . E 4 HOH 7 1010 7 HOH HOH A . E 4 HOH 8 1011 8 HOH HOH A . E 4 HOH 9 1012 9 HOH HOH A . E 4 HOH 10 1013 10 HOH HOH A . E 4 HOH 11 1014 11 HOH HOH A . E 4 HOH 12 1015 12 HOH HOH A . E 4 HOH 13 1016 13 HOH HOH A . E 4 HOH 14 1017 14 HOH HOH A . E 4 HOH 15 1018 15 HOH HOH A . E 4 HOH 16 1019 16 HOH HOH A . E 4 HOH 17 1020 17 HOH HOH A . E 4 HOH 18 1021 18 HOH HOH A . E 4 HOH 19 1022 19 HOH HOH A . E 4 HOH 20 1023 20 HOH HOH A . E 4 HOH 21 1024 21 HOH HOH A . E 4 HOH 22 1025 22 HOH HOH A . E 4 HOH 23 1026 23 HOH HOH A . E 4 HOH 24 1027 24 HOH HOH A . E 4 HOH 25 1028 25 HOH HOH A . E 4 HOH 26 1029 26 HOH HOH A . E 4 HOH 27 1030 27 HOH HOH A . E 4 HOH 28 1031 28 HOH HOH A . E 4 HOH 29 1032 29 HOH HOH A . E 4 HOH 30 1033 30 HOH HOH A . E 4 HOH 31 1034 31 HOH HOH A . E 4 HOH 32 1035 32 HOH HOH A . E 4 HOH 33 1036 33 HOH HOH A . E 4 HOH 34 1037 34 HOH HOH A . E 4 HOH 35 1038 35 HOH HOH A . E 4 HOH 36 1039 36 HOH HOH A . E 4 HOH 37 1040 37 HOH HOH A . E 4 HOH 38 1041 38 HOH HOH A . E 4 HOH 39 1042 39 HOH HOH A . E 4 HOH 40 1043 40 HOH HOH A . E 4 HOH 41 1044 41 HOH HOH A . E 4 HOH 42 1045 42 HOH HOH A . E 4 HOH 43 1046 43 HOH HOH A . E 4 HOH 44 1047 44 HOH HOH A . E 4 HOH 45 1048 45 HOH HOH A . E 4 HOH 46 1049 46 HOH HOH A . E 4 HOH 47 1050 47 HOH HOH A . E 4 HOH 48 1051 48 HOH HOH A . E 4 HOH 49 1052 49 HOH HOH A . E 4 HOH 50 1053 50 HOH HOH A . E 4 HOH 51 1054 51 HOH HOH A . E 4 HOH 52 1055 52 HOH HOH A . E 4 HOH 53 1056 53 HOH HOH A . E 4 HOH 54 1057 54 HOH HOH A . E 4 HOH 55 1058 55 HOH HOH A . E 4 HOH 56 1059 56 HOH HOH A . E 4 HOH 57 1060 57 HOH HOH A . E 4 HOH 58 1061 58 HOH HOH A . E 4 HOH 59 1062 59 HOH HOH A . E 4 HOH 60 1063 60 HOH HOH A . E 4 HOH 61 1064 61 HOH HOH A . E 4 HOH 62 1065 62 HOH HOH A . E 4 HOH 63 1066 63 HOH HOH A . E 4 HOH 64 1067 64 HOH HOH A . E 4 HOH 65 1068 65 HOH HOH A . E 4 HOH 66 1069 66 HOH HOH A . E 4 HOH 67 1070 67 HOH HOH A . E 4 HOH 68 1071 68 HOH HOH A . E 4 HOH 69 1072 69 HOH HOH A . E 4 HOH 70 1073 70 HOH HOH A . E 4 HOH 71 1074 71 HOH HOH A . E 4 HOH 72 1075 72 HOH HOH A . E 4 HOH 73 1076 73 HOH HOH A . E 4 HOH 74 1077 74 HOH HOH A . E 4 HOH 75 1078 75 HOH HOH A . E 4 HOH 76 1079 76 HOH HOH A . E 4 HOH 77 1080 77 HOH HOH A . E 4 HOH 78 1081 78 HOH HOH A . E 4 HOH 79 1082 79 HOH HOH A . E 4 HOH 80 1083 80 HOH HOH A . E 4 HOH 81 1084 81 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 54 ? CG ? A LYS 53 CG 2 1 Y 1 A LYS 54 ? CD ? A LYS 53 CD 3 1 Y 1 A LYS 54 ? CE ? A LYS 53 CE 4 1 Y 1 A LYS 54 ? NZ ? A LYS 53 NZ 5 1 Y 1 A GLU 78 ? CG ? A GLU 69 CG 6 1 Y 1 A GLU 78 ? CD ? A GLU 69 CD 7 1 Y 1 A GLU 78 ? OE1 ? A GLU 69 OE1 8 1 Y 1 A GLU 78 ? OE2 ? A GLU 69 OE2 9 1 Y 1 A LYS 124 ? CB ? A LYS 114 CB 10 1 Y 1 A LYS 124 ? CG ? A LYS 114 CG 11 1 Y 1 A LYS 124 ? CD ? A LYS 114 CD 12 1 Y 1 A LYS 124 ? CE ? A LYS 114 CE 13 1 Y 1 A LYS 124 ? NZ ? A LYS 114 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1M8R _cell.length_a 83.270 _cell.length_b 83.270 _cell.length_c 32.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8R _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # _exptl.entry_id 1M8R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.69 _exptl_crystal.density_Matthews 2.35 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '10%(v/v) 1,4-butyldiol, 0.01M CdCl2, 0.1M Na(CH3)2AsO, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 293 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 2 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1M8R _reflns.observed_criterion_sigma_I 0.0001 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.9 _reflns.number_obs 10450 _reflns.number_all 10450 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.2 _reflns.B_iso_Wilson_estimate 20.4 _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.369 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.7 _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1016 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1M8R _refine.ls_number_reflns_obs 10434 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all 0.193 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.21 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1078 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.7 _refine.aniso_B[1][1] 0.89 _refine.aniso_B[2][2] 0.89 _refine.aniso_B[3][3] -1.78 _refine.aniso_B[1][2] 0.81 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.401006 _refine.solvent_model_param_bsol 91.6329 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PSJ' _refine.pdbx_method_to_determine_struct 'isomorphous difference Fourier' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1M8R _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.06 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 954 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1048 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.59 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.55 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.16 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.08 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 1504 _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.242 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 11.6 _refine_ls_shell.number_reflns_R_free 198 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 BBO.PARAM BBO.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1M8R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1M8R _struct.title ;Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 7.4) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M8R _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'phopholipase a2-metal cation complex, three alpha, two beta, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA21B_AGKHP _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLIQFETLIMKVAKKSGMFWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLTLYNDKKYWAFGAKNCPQEESEPC ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P14418 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1M8R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14418 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1M8R VAL A 3 ? UNP P14418 ILE 3 'SEE REMARK 999' 3 1 1 1M8R GLN A 19 ? UNP P14418 PHE 19 'SEE REMARK 999' 20 2 1 1M8R ASN A 101 ? UNP P14418 THR 101 'SEE REMARK 999' 111 3 1 1M8R THR A 102 ? UNP P14418 LEU 102 'SEE REMARK 999' 112 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ALA A 13 ? SER A 1 ALA A 13 1 ? 13 HELX_P HELX_P2 2 SER A 16 ? TYR A 21 ? SER A 17 TYR A 22 1 ? 6 HELX_P HELX_P3 4 ASP A 79 ? ASN A 99 ? ASP A 89 ASN A 109 1 ? 21 HELX_P HELX_P4 5 LEU A 100 ? TYR A 103 ? LEU A 110 TYR A 113 5 ? 4 HELX_P HELX_P5 6 ASN A 104 ? TRP A 109 ? ASN A 114 TRP A 119 1 ? 6 HELX_P HELX_P6 7 PRO A 117 ? SER A 121 ? PRO A 127 SER A 131 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 116 SG ? ? A CYS 27 A CYS 126 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 44 A CYS 105 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 50 A CYS 134 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 51 A CYS 98 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf6 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 61 A CYS 91 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf7 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 84 A CYS 96 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc1 metalc ? ? A TYR 27 O ? ? ? 1_555 B CD . CD ? ? A TYR 28 A CD 1001 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc2 metalc ? ? A GLY 29 O ? ? ? 1_555 B CD . CD ? ? A GLY 30 A CD 1001 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc3 metalc ? ? A GLY 31 O ? ? ? 1_555 B CD . CD ? ? A GLY 32 A CD 1001 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc4 metalc ? ? A ASP 48 OD1 ? ? ? 1_555 B CD . CD ? ? A ASP 49 A CD 1001 1_555 ? ? ? ? ? ? ? 3.031 ? ? metalc5 metalc ? ? A ASP 48 OD2 ? ? ? 1_555 B CD . CD ? ? A ASP 49 A CD 1001 1_555 ? ? ? ? ? ? ? 2.272 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A TYR 27 ? A TYR 28 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 O ? A GLY 29 ? A GLY 30 ? 1_555 87.9 ? 2 O ? A TYR 27 ? A TYR 28 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 O ? A GLY 31 ? A GLY 32 ? 1_555 101.2 ? 3 O ? A GLY 29 ? A GLY 30 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 O ? A GLY 31 ? A GLY 32 ? 1_555 90.4 ? 4 O ? A TYR 27 ? A TYR 28 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 117.3 ? 5 O ? A GLY 29 ? A GLY 30 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 120.6 ? 6 O ? A GLY 31 ? A GLY 32 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 129.6 ? 7 O ? A TYR 27 ? A TYR 28 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 110.7 ? 8 O ? A GLY 29 ? A GLY 30 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 160.5 ? 9 O ? A GLY 31 ? A GLY 32 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 91.8 ? 10 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 CD ? B CD . ? A CD 1001 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 46.0 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 26 ? CYS A 116 ? CYS A 27 ? 1_555 CYS A 126 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 28 ? CYS A 44 ? CYS A 29 ? 1_555 CYS A 45 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 43 ? CYS A 95 ? CYS A 44 ? 1_555 CYS A 105 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 49 ? CYS A 124 ? CYS A 50 ? 1_555 CYS A 134 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 50 ? CYS A 88 ? CYS A 51 ? 1_555 CYS A 98 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 57 ? CYS A 81 ? CYS A 61 ? 1_555 CYS A 91 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 75 ? CYS A 86 ? CYS A 84 ? 1_555 CYS A 96 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 65 ? GLU A 69 ? SER A 74 GLU A 78 A 2 ASP A 72 ? GLY A 76 ? ASP A 81 GLY A 85 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 69 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 78 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ASP _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 72 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 81 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 1001 ? 4 'BINDING SITE FOR RESIDUE CD A 1001' AC2 Software A BU1 1002 ? 4 'BINDING SITE FOR RESIDUE BU1 A 1002' AC3 Software A BU1 1003 ? 7 'BINDING SITE FOR RESIDUE BU1 A 1003' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 27 ? TYR A 28 . ? 1_555 ? 2 AC1 4 GLY A 29 ? GLY A 30 . ? 1_555 ? 3 AC1 4 GLY A 31 ? GLY A 32 . ? 1_555 ? 4 AC1 4 ASP A 48 ? ASP A 49 . ? 1_555 ? 5 AC2 4 GLU A 6 ? GLU A 6 . ? 1_555 ? 6 AC2 4 MET A 18 ? MET A 19 . ? 1_555 ? 7 AC2 4 TYR A 21 ? TYR A 22 . ? 1_555 ? 8 AC2 4 CYS A 44 ? CYS A 45 . ? 1_555 ? 9 AC3 7 MET A 18 ? MET A 19 . ? 1_555 ? 10 AC3 7 GLN A 19 ? GLN A 20 . ? 1_555 ? 11 AC3 7 SER A 22 ? SER A 23 . ? 1_555 ? 12 AC3 7 PRO A 36 ? PRO A 37 . ? 5_564 ? 13 AC3 7 ALA A 39 ? ALA A 40 . ? 5_564 ? 14 AC3 7 ARG A 42 ? ARG A 43 . ? 5_564 ? 15 AC3 7 HOH E . ? HOH A 1007 . ? 5_564 ? # _pdbx_entry_details.entry_id 1M8R _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 24 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -156.70 _pdbx_validate_torsion.psi 55.91 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BU1 C1 C N N 74 BU1 C2 C N N 75 BU1 C3 C N N 76 BU1 C4 C N N 77 BU1 O5 O N N 78 BU1 O6 O N N 79 BU1 H11 H N N 80 BU1 H12 H N N 81 BU1 H21 H N N 82 BU1 H22 H N N 83 BU1 H31 H N N 84 BU1 H32 H N N 85 BU1 H41 H N N 86 BU1 H42 H N N 87 BU1 HO5 H N N 88 BU1 HO6 H N N 89 CD CD CD N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 THR N N N N 321 THR CA C N S 322 THR C C N N 323 THR O O N N 324 THR CB C N R 325 THR OG1 O N N 326 THR CG2 C N N 327 THR OXT O N N 328 THR H H N N 329 THR H2 H N N 330 THR HA H N N 331 THR HB H N N 332 THR HG1 H N N 333 THR HG21 H N N 334 THR HG22 H N N 335 THR HG23 H N N 336 THR HXT H N N 337 TRP N N N N 338 TRP CA C N S 339 TRP C C N N 340 TRP O O N N 341 TRP CB C N N 342 TRP CG C Y N 343 TRP CD1 C Y N 344 TRP CD2 C Y N 345 TRP NE1 N Y N 346 TRP CE2 C Y N 347 TRP CE3 C Y N 348 TRP CZ2 C Y N 349 TRP CZ3 C Y N 350 TRP CH2 C Y N 351 TRP OXT O N N 352 TRP H H N N 353 TRP H2 H N N 354 TRP HA H N N 355 TRP HB2 H N N 356 TRP HB3 H N N 357 TRP HD1 H N N 358 TRP HE1 H N N 359 TRP HE3 H N N 360 TRP HZ2 H N N 361 TRP HZ3 H N N 362 TRP HH2 H N N 363 TRP HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BU1 C1 C2 sing N N 70 BU1 C1 O5 sing N N 71 BU1 C1 H11 sing N N 72 BU1 C1 H12 sing N N 73 BU1 C2 C3 sing N N 74 BU1 C2 H21 sing N N 75 BU1 C2 H22 sing N N 76 BU1 C3 C4 sing N N 77 BU1 C3 H31 sing N N 78 BU1 C3 H32 sing N N 79 BU1 C4 O6 sing N N 80 BU1 C4 H41 sing N N 81 BU1 C4 H42 sing N N 82 BU1 O5 HO5 sing N N 83 BU1 O6 HO6 sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 HOH O H1 sing N N 165 HOH O H2 sing N N 166 ILE N CA sing N N 167 ILE N H sing N N 168 ILE N H2 sing N N 169 ILE CA C sing N N 170 ILE CA CB sing N N 171 ILE CA HA sing N N 172 ILE C O doub N N 173 ILE C OXT sing N N 174 ILE CB CG1 sing N N 175 ILE CB CG2 sing N N 176 ILE CB HB sing N N 177 ILE CG1 CD1 sing N N 178 ILE CG1 HG12 sing N N 179 ILE CG1 HG13 sing N N 180 ILE CG2 HG21 sing N N 181 ILE CG2 HG22 sing N N 182 ILE CG2 HG23 sing N N 183 ILE CD1 HD11 sing N N 184 ILE CD1 HD12 sing N N 185 ILE CD1 HD13 sing N N 186 ILE OXT HXT sing N N 187 LEU N CA sing N N 188 LEU N H sing N N 189 LEU N H2 sing N N 190 LEU CA C sing N N 191 LEU CA CB sing N N 192 LEU CA HA sing N N 193 LEU C O doub N N 194 LEU C OXT sing N N 195 LEU CB CG sing N N 196 LEU CB HB2 sing N N 197 LEU CB HB3 sing N N 198 LEU CG CD1 sing N N 199 LEU CG CD2 sing N N 200 LEU CG HG sing N N 201 LEU CD1 HD11 sing N N 202 LEU CD1 HD12 sing N N 203 LEU CD1 HD13 sing N N 204 LEU CD2 HD21 sing N N 205 LEU CD2 HD22 sing N N 206 LEU CD2 HD23 sing N N 207 LEU OXT HXT sing N N 208 LYS N CA sing N N 209 LYS N H sing N N 210 LYS N H2 sing N N 211 LYS CA C sing N N 212 LYS CA CB sing N N 213 LYS CA HA sing N N 214 LYS C O doub N N 215 LYS C OXT sing N N 216 LYS CB CG sing N N 217 LYS CB HB2 sing N N 218 LYS CB HB3 sing N N 219 LYS CG CD sing N N 220 LYS CG HG2 sing N N 221 LYS CG HG3 sing N N 222 LYS CD CE sing N N 223 LYS CD HD2 sing N N 224 LYS CD HD3 sing N N 225 LYS CE NZ sing N N 226 LYS CE HE2 sing N N 227 LYS CE HE3 sing N N 228 LYS NZ HZ1 sing N N 229 LYS NZ HZ2 sing N N 230 LYS NZ HZ3 sing N N 231 LYS OXT HXT sing N N 232 MET N CA sing N N 233 MET N H sing N N 234 MET N H2 sing N N 235 MET CA C sing N N 236 MET CA CB sing N N 237 MET CA HA sing N N 238 MET C O doub N N 239 MET C OXT sing N N 240 MET CB CG sing N N 241 MET CB HB2 sing N N 242 MET CB HB3 sing N N 243 MET CG SD sing N N 244 MET CG HG2 sing N N 245 MET CG HG3 sing N N 246 MET SD CE sing N N 247 MET CE HE1 sing N N 248 MET CE HE2 sing N N 249 MET CE HE3 sing N N 250 MET OXT HXT sing N N 251 PHE N CA sing N N 252 PHE N H sing N N 253 PHE N H2 sing N N 254 PHE CA C sing N N 255 PHE CA CB sing N N 256 PHE CA HA sing N N 257 PHE C O doub N N 258 PHE C OXT sing N N 259 PHE CB CG sing N N 260 PHE CB HB2 sing N N 261 PHE CB HB3 sing N N 262 PHE CG CD1 doub Y N 263 PHE CG CD2 sing Y N 264 PHE CD1 CE1 sing Y N 265 PHE CD1 HD1 sing N N 266 PHE CD2 CE2 doub Y N 267 PHE CD2 HD2 sing N N 268 PHE CE1 CZ doub Y N 269 PHE CE1 HE1 sing N N 270 PHE CE2 CZ sing Y N 271 PHE CE2 HE2 sing N N 272 PHE CZ HZ sing N N 273 PHE OXT HXT sing N N 274 PRO N CA sing N N 275 PRO N CD sing N N 276 PRO N H sing N N 277 PRO CA C sing N N 278 PRO CA CB sing N N 279 PRO CA HA sing N N 280 PRO C O doub N N 281 PRO C OXT sing N N 282 PRO CB CG sing N N 283 PRO CB HB2 sing N N 284 PRO CB HB3 sing N N 285 PRO CG CD sing N N 286 PRO CG HG2 sing N N 287 PRO CG HG3 sing N N 288 PRO CD HD2 sing N N 289 PRO CD HD3 sing N N 290 PRO OXT HXT sing N N 291 SER N CA sing N N 292 SER N H sing N N 293 SER N H2 sing N N 294 SER CA C sing N N 295 SER CA CB sing N N 296 SER CA HA sing N N 297 SER C O doub N N 298 SER C OXT sing N N 299 SER CB OG sing N N 300 SER CB HB2 sing N N 301 SER CB HB3 sing N N 302 SER OG HG sing N N 303 SER OXT HXT sing N N 304 THR N CA sing N N 305 THR N H sing N N 306 THR N H2 sing N N 307 THR CA C sing N N 308 THR CA CB sing N N 309 THR CA HA sing N N 310 THR C O doub N N 311 THR C OXT sing N N 312 THR CB OG1 sing N N 313 THR CB CG2 sing N N 314 THR CB HB sing N N 315 THR OG1 HG1 sing N N 316 THR CG2 HG21 sing N N 317 THR CG2 HG22 sing N N 318 THR CG2 HG23 sing N N 319 THR OXT HXT sing N N 320 TRP N CA sing N N 321 TRP N H sing N N 322 TRP N H2 sing N N 323 TRP CA C sing N N 324 TRP CA CB sing N N 325 TRP CA HA sing N N 326 TRP C O doub N N 327 TRP C OXT sing N N 328 TRP CB CG sing N N 329 TRP CB HB2 sing N N 330 TRP CB HB3 sing N N 331 TRP CG CD1 doub Y N 332 TRP CG CD2 sing Y N 333 TRP CD1 NE1 sing Y N 334 TRP CD1 HD1 sing N N 335 TRP CD2 CE2 doub Y N 336 TRP CD2 CE3 sing Y N 337 TRP NE1 CE2 sing Y N 338 TRP NE1 HE1 sing N N 339 TRP CE2 CZ2 sing Y N 340 TRP CE3 CZ3 doub Y N 341 TRP CE3 HE3 sing N N 342 TRP CZ2 CH2 doub Y N 343 TRP CZ2 HZ2 sing N N 344 TRP CZ3 CH2 sing Y N 345 TRP CZ3 HZ3 sing N N 346 TRP CH2 HH2 sing N N 347 TRP OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PSJ _pdbx_initial_refinement_model.details 'PDB ENTRY 1PSJ' # _atom_sites.entry_id 1M8R _atom_sites.fract_transf_matrix[1][1] 0.012009 _atom_sites.fract_transf_matrix[1][2] 0.006933 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013867 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030488 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O S # loop_