HEADER CONTRACTILE PROTEIN 29-JUL-02 1M9L TITLE RELAXATION-BASED REFINED STRUCTURE OF CHLAMYDOMONAS OUTER ARM DYNEIN TITLE 2 LIGHT CHAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER ARM DYNEIN LIGHT CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: 1132D(-); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS LEUCINE-RICH REPEAT, RELAXATION, STRUCTURAL REFINEMENT, BACKBONE KEYWDS 2 DYNAMICS, STRUCTURE FROM MOLMOL, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.W.WU,M.W.MACIEJEWSKI,A.MARINTCHEV,S.E.BENASHSKI,G.P.MULLEN,S.M.KING REVDAT 4 22-MAY-24 1M9L 1 REMARK REVDAT 3 23-FEB-22 1M9L 1 REMARK SEQADV REVDAT 2 24-FEB-09 1M9L 1 VERSN REVDAT 1 04-MAR-03 1M9L 0 JRNL AUTH H.WU,M.BLACKLEDGE,M.W.MACIEJEWSKI,G.P.MULLEN,S.M.KING JRNL TITL RELAXATION-BASED STRUCTURE REFINEMENT AND BACKBONE MOLECULAR JRNL TITL 2 DYNAMICS OF THE DYNEIN MOTOR DOMAIN-ASSOCIATED LIGHT CHAIN JRNL REF BIOCHEMISTRY V. 42 57 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12515539 JRNL DOI 10.1021/BI026762J REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.W.WU,M.W.MACIEJEWSKI,A.MARINTCHEV,S.E.BENASHSKI, REMARK 1 AUTH 2 G.P.MULLEN,S.M.KING REMARK 1 TITL SOLUTION STRUCTURE OF A DYNEIN MOTOR DOMAIN ASSOCIATED LIGHT REMARK 1 TITL 2 CHAIN REMARK 1 REF NAT.STRUCT.BIOL. V. 7 575 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/76804 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 95.0, DISCOVER 2.98 REMARK 3 AUTHORS : MSI INC., SAN DIEGO (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M9L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016767. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~2.0 MM LIGHT CHAIN 1 PROTEIN, U REMARK 210 -15N, 2.5 MM TRIS.CL PH 6.7, 100 REMARK 210 MM NACL; 90% H2O, 10% D2O. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : R1 RELAXATION 15N HSQC; R1RHO REMARK 210 RELAXATION 15N HSQC; 1H-15N NOE REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TENSOR2 2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 15 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: USING RELAXATION R2/R1 RATIOS AS LONG RANGE CONSTRAINTS TO REMARK 210 REFINE STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 TYR A 165 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 12 TYR A 156 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 15 TYR A 153 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -151.82 -137.58 REMARK 500 1 ALA A 4 92.28 -160.13 REMARK 500 1 THR A 5 -107.70 -128.67 REMARK 500 1 SER A 19 52.18 86.10 REMARK 500 1 ALA A 22 -67.08 -102.58 REMARK 500 1 GLU A 24 33.84 34.61 REMARK 500 1 LEU A 30 -158.86 -106.62 REMARK 500 1 HIS A 31 -25.15 -154.73 REMARK 500 1 PRO A 36 6.85 -63.69 REMARK 500 1 GLU A 38 -95.36 -106.25 REMARK 500 1 MET A 40 75.36 -100.48 REMARK 500 1 LYS A 51 -67.04 -159.94 REMARK 500 1 LEU A 55 -164.02 -116.11 REMARK 500 1 SER A 56 -45.36 -160.92 REMARK 500 1 GLU A 70 1.07 -49.04 REMARK 500 1 ARG A 73 -57.20 -138.38 REMARK 500 1 SER A 76 68.44 -106.43 REMARK 500 1 LYS A 83 -56.24 -131.69 REMARK 500 1 ASN A 87 -10.22 -158.59 REMARK 500 1 GLU A 96 -50.49 -158.24 REMARK 500 1 ILE A 100 58.19 -142.07 REMARK 500 1 SER A 101 -52.21 -23.05 REMARK 500 1 ALA A 106 -18.75 -162.35 REMARK 500 1 LEU A 117 175.34 -34.93 REMARK 500 1 THR A 128 -7.91 -142.27 REMARK 500 1 GLU A 132 -68.59 -108.62 REMARK 500 1 ALA A 137 13.20 -68.98 REMARK 500 1 LYS A 141 -70.25 -79.75 REMARK 500 1 LEU A 142 142.54 -20.53 REMARK 500 1 GLU A 143 -74.45 -94.47 REMARK 500 1 ASN A 150 140.02 171.20 REMARK 500 1 LYS A 157 86.05 132.37 REMARK 500 1 GLU A 158 0.55 -43.24 REMARK 500 1 ASN A 159 17.79 -148.18 REMARK 500 1 ASN A 160 -39.17 -141.56 REMARK 500 1 PRO A 174 -76.57 -75.08 REMARK 500 1 ASN A 175 -91.80 -66.22 REMARK 500 1 LEU A 176 122.84 -18.21 REMARK 500 1 LYS A 178 78.52 -115.87 REMARK 500 1 ASP A 180 -1.30 93.86 REMARK 500 1 MET A 182 -39.13 -35.07 REMARK 500 1 ASP A 185 4.73 48.17 REMARK 500 1 VAL A 186 -14.77 96.22 REMARK 500 1 GLU A 190 -63.37 -123.17 REMARK 500 2 ALA A 2 -79.16 -118.48 REMARK 500 2 LYS A 3 -152.45 -117.59 REMARK 500 2 ALA A 4 94.64 -160.25 REMARK 500 2 THR A 5 -111.39 -137.39 REMARK 500 2 GLU A 16 -61.16 -99.74 REMARK 500 2 SER A 19 60.71 66.93 REMARK 500 REMARK 500 THIS ENTRY HAS 692 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 153 0.07 SIDE CHAIN REMARK 500 1 TYR A 156 0.14 SIDE CHAIN REMARK 500 2 TYR A 156 0.12 SIDE CHAIN REMARK 500 3 TYR A 156 0.14 SIDE CHAIN REMARK 500 4 TYR A 156 0.39 SIDE CHAIN REMARK 500 4 TYR A 165 0.07 SIDE CHAIN REMARK 500 5 TYR A 156 0.16 SIDE CHAIN REMARK 500 5 TYR A 165 0.16 SIDE CHAIN REMARK 500 6 TYR A 156 0.14 SIDE CHAIN REMARK 500 7 TYR A 156 0.18 SIDE CHAIN REMARK 500 7 TYR A 165 0.07 SIDE CHAIN REMARK 500 8 TYR A 156 0.16 SIDE CHAIN REMARK 500 8 TYR A 165 0.11 SIDE CHAIN REMARK 500 9 TYR A 153 0.11 SIDE CHAIN REMARK 500 9 TYR A 156 0.09 SIDE CHAIN REMARK 500 10 TYR A 102 0.07 SIDE CHAIN REMARK 500 10 TYR A 153 0.08 SIDE CHAIN REMARK 500 10 TYR A 156 0.11 SIDE CHAIN REMARK 500 11 TYR A 153 0.10 SIDE CHAIN REMARK 500 11 TYR A 156 0.17 SIDE CHAIN REMARK 500 12 TYR A 156 0.44 SIDE CHAIN REMARK 500 13 TYR A 121 0.08 SIDE CHAIN REMARK 500 13 TYR A 153 0.07 SIDE CHAIN REMARK 500 13 TYR A 156 0.16 SIDE CHAIN REMARK 500 14 TYR A 153 0.07 SIDE CHAIN REMARK 500 14 TYR A 156 0.14 SIDE CHAIN REMARK 500 15 TYR A 153 0.13 SIDE CHAIN REMARK 500 15 TYR A 156 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DS9 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CHLAMYDOMONAS OUTER ARM DYNEIN LIGHT CHAIN 1 DBREF 1M9L A 1 198 UNP Q9XHH2 Q9XHH2_CHLRE 1 198 SEQADV 1M9L HIS A 0 UNP Q9XHH2 EXPRESSION TAG SEQRES 1 A 199 HIS MET ALA LYS ALA THR THR ILE LYS ASP ALA ILE ARG SEQRES 2 A 199 ILE PHE GLU GLU ARG LYS SER VAL VAL ALA THR GLU ALA SEQRES 3 A 199 GLU LYS VAL GLU LEU HIS GLY MET ILE PRO PRO ILE GLU SEQRES 4 A 199 LYS MET ASP ALA THR LEU SER THR LEU LYS ALA CYS LYS SEQRES 5 A 199 HIS LEU ALA LEU SER THR ASN ASN ILE GLU LYS ILE SER SEQRES 6 A 199 SER LEU SER GLY MET GLU ASN LEU ARG ILE LEU SER LEU SEQRES 7 A 199 GLY ARG ASN LEU ILE LYS LYS ILE GLU ASN LEU ASP ALA SEQRES 8 A 199 VAL ALA ASP THR LEU GLU GLU LEU TRP ILE SER TYR ASN SEQRES 9 A 199 GLN ILE ALA SER LEU SER GLY ILE GLU LYS LEU VAL ASN SEQRES 10 A 199 LEU ARG VAL LEU TYR MET SER ASN ASN LYS ILE THR ASN SEQRES 11 A 199 TRP GLY GLU ILE ASP LYS LEU ALA ALA LEU ASP LYS LEU SEQRES 12 A 199 GLU ASP LEU LEU LEU ALA GLY ASN PRO LEU TYR ASN ASP SEQRES 13 A 199 TYR LYS GLU ASN ASN ALA THR SER GLU TYR ARG ILE GLU SEQRES 14 A 199 VAL VAL LYS ARG LEU PRO ASN LEU LYS LYS LEU ASP GLY SEQRES 15 A 199 MET PRO VAL ASP VAL ASP GLU ARG GLU GLN ALA ASN VAL SEQRES 16 A 199 ALA ARG GLY GLY HELIX 1 1 THR A 6 ARG A 17 1 12 HELIX 2 2 MET A 40 LEU A 47 1 8 HELIX 3 3 LYS A 48 CYS A 50 5 3 HELIX 4 4 SER A 65 GLU A 70 1 6 HELIX 5 5 ASN A 87 LEU A 95 1 9 HELIX 6 6 SER A 107 LEU A 117 1 11 HELIX 7 7 ASN A 129 ALA A 137 1 9 HELIX 8 8 ASN A 150 LYS A 157 1 8 HELIX 9 9 ALA A 161 LEU A 173 1 13 HELIX 10 10 GLY A 181 ASP A 185 5 5 HELIX 11 11 GLU A 190 GLY A 197 1 8 SHEET 1 A 7 VAL A 28 GLU A 29 0 SHEET 2 A 7 HIS A 52 ALA A 54 1 O ALA A 54 N VAL A 28 SHEET 3 A 7 ILE A 74 SER A 76 1 O SER A 76 N LEU A 53 SHEET 4 A 7 GLU A 97 TRP A 99 1 O TRP A 99 N LEU A 75 SHEET 5 A 7 VAL A 119 MET A 122 1 O TYR A 121 N LEU A 98 SHEET 6 A 7 ASP A 144 LEU A 147 1 O LEU A 146 N LEU A 120 SHEET 7 A 7 LYS A 178 LEU A 179 1 O LYS A 178 N LEU A 145 SHEET 1 B 4 THR A 57 ILE A 60 0 SHEET 2 B 4 ARG A 79 ILE A 82 1 O ARG A 79 N ASN A 58 SHEET 3 B 4 TYR A 102 GLN A 104 1 O GLN A 104 N ASN A 80 SHEET 4 B 4 ASN A 124 LYS A 126 1 O LYS A 126 N ASN A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1