data_1M9Z # _entry.id 1M9Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1M9Z pdb_00001m9z 10.2210/pdb1m9z/pdb RCSB RCSB016781 ? ? WWPDB D_1000016781 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1KTZ _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE HUMAN TGF-BETA TYPE II RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH TGF-BETA3' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M9Z _pdbx_database_status.recvd_initial_deposition_date 2002-07-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boesen, C.C.' 1 'Radaev, S.' 2 'Motyka, S.A.' 3 'Patamawenu, A.' 4 'Sun, P.D.' 5 # _citation.id primary _citation.title 'THE 1.1A CRYSTAL STRUCTURE OF HUMAN TGF-BETA TYPE II RECEPTOR LIGAND BINDING DOMAIN' _citation.journal_abbrev Structure _citation.journal_volume 10 _citation.page_first 913 _citation.page_last 919 _citation.year 2002 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12121646 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(02)00780-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boesen, C.C.' 1 ? primary 'Radaev, S.' 2 ? primary 'Motyka, S.A.' 3 ? primary 'Patamawenu, A.' 4 ? primary 'Sun, P.D.' 5 ? # _cell.entry_id 1M9Z _cell.length_a 35.471 _cell.length_b 40.658 _cell.length_c 76.154 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9Z _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TGF-BETA RECEPTOR TYPE II' 12624.248 1 ? Q26A,K97T Extracellular ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TGFR-2, TGF-beta type II receptor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ALCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPTCIMKEKKK PGETFFMCSCSSDECNDNIIFSEEYNTSNPD ; _entity_poly.pdbx_seq_one_letter_code_can ;ALCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPTCIMKEKKK PGETFFMCSCSSDECNDNIIFSEEYNTSNPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LEU n 1 3 CYS n 1 4 LYS n 1 5 PHE n 1 6 CYS n 1 7 ASP n 1 8 VAL n 1 9 ARG n 1 10 PHE n 1 11 SER n 1 12 THR n 1 13 CYS n 1 14 ASP n 1 15 ASN n 1 16 GLN n 1 17 LYS n 1 18 SER n 1 19 CYS n 1 20 MET n 1 21 SER n 1 22 ASN n 1 23 CYS n 1 24 SER n 1 25 ILE n 1 26 THR n 1 27 SER n 1 28 ILE n 1 29 CYS n 1 30 GLU n 1 31 LYS n 1 32 PRO n 1 33 GLN n 1 34 GLU n 1 35 VAL n 1 36 CYS n 1 37 VAL n 1 38 ALA n 1 39 VAL n 1 40 TRP n 1 41 ARG n 1 42 LYS n 1 43 ASN n 1 44 ASP n 1 45 GLU n 1 46 ASN n 1 47 ILE n 1 48 THR n 1 49 LEU n 1 50 GLU n 1 51 THR n 1 52 VAL n 1 53 CYS n 1 54 HIS n 1 55 ASP n 1 56 PRO n 1 57 LYS n 1 58 LEU n 1 59 PRO n 1 60 TYR n 1 61 HIS n 1 62 ASP n 1 63 PHE n 1 64 ILE n 1 65 LEU n 1 66 GLU n 1 67 ASP n 1 68 ALA n 1 69 ALA n 1 70 SER n 1 71 PRO n 1 72 THR n 1 73 CYS n 1 74 ILE n 1 75 MET n 1 76 LYS n 1 77 GLU n 1 78 LYS n 1 79 LYS n 1 80 LYS n 1 81 PRO n 1 82 GLY n 1 83 GLU n 1 84 THR n 1 85 PHE n 1 86 PHE n 1 87 MET n 1 88 CYS n 1 89 SER n 1 90 CYS n 1 91 SER n 1 92 SER n 1 93 ASP n 1 94 GLU n 1 95 CYS n 1 96 ASN n 1 97 ASP n 1 98 ASN n 1 99 ILE n 1 100 ILE n 1 101 PHE n 1 102 SER n 1 103 GLU n 1 104 GLU n 1 105 TYR n 1 106 ASN n 1 107 THR n 1 108 SER n 1 109 ASN n 1 110 PRO n 1 111 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TGFR2_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKK PGETFFMCSCSSDECNDNIIFSEEYNTSNPDLLLVIFQVTGISLLPPLGVAISVIIIFYCYRVNRQQKLSSTWETGKTRK LMEFSEHCAIILEDDRSDISSTCANNINHNTELLPIELDTLVGKGRFAEVYKAKLKQNTSEQFETVAVKIFPYEEYASWK TEKDIFSDINLKHENILQFLTAEERKTELGKQYWLITAFHAKGNLQEYLTRHVISWEDLRKLGSSLARGIAHLHSDHTPC GRPKMPIVHRDLKSSNILVKNDLTCCLCDFGLSLRLDPTLSVDDLANSGQVGTARYMAPEVLESRMNLENAESFKQTDVY SMALVLWEMTSRCNAVGEVKDYEPPFGSKVREHPCVESMKDNVLRDRGRPEIPSFWLNHQGIQMVCETLTECWDHDPEAR LTAQCVAERFSELEHLDRLSGRSCSEEKIPEDGSLNTTK ; _struct_ref.pdbx_align_begin 49 _struct_ref.pdbx_db_accession P37173 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1M9Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P37173 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 136 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1M9Z ALA A 1 ? UNP P37173 GLN 49 'engineered mutation' 26 1 1 1M9Z THR A 72 ? UNP P37173 LYS 120 'engineered mutation' 97 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1M9Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.42 _exptl_crystal.density_Matthews 2.17 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'PEG 2000, sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0092 1.0 2 1.0011 1.0 3 1.0076 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.0092, 1.0011, 1.0076' # _reflns.entry_id 1M9Z _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.05 _reflns.d_resolution_low 36 _reflns.number_all 45991 _reflns.number_obs 43635 _reflns.percent_possible_obs 87.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.035 _reflns.pdbx_netI_over_sigmaI 56.5 _reflns.B_iso_Wilson_estimate 8.0 _reflns.pdbx_redundancy 8.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.05 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 44.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.488 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2277 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1M9Z _refine.ls_number_reflns_obs 43635 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 35.81 _refine.ls_d_res_high 1.05 _refine.ls_percent_reflns_obs 87.96 _refine.ls_R_factor_obs 0.15647 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15595 _refine.ls_R_factor_R_free 0.16615 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2306 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.973 _refine.B_iso_mean 12.080 _refine.aniso_B[1][1] 0.10 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] 0.06 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 827 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1011 _refine_hist.d_res_high 1.05 _refine_hist.d_res_low 35.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 842 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 703 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.478 1.958 ? 1139 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.686 3.000 ? 1661 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.709 3.000 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.459 15.000 ? 153 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 127 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 923 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 154 'X-RAY DIFFRACTION' ? r_nbd_refined 0.224 0.300 ? 177 'X-RAY DIFFRACTION' ? r_nbd_other 0.208 0.300 ? 749 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.227 0.500 ? 147 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.339 0.300 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.143 0.300 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.286 0.500 ? 21 'X-RAY DIFFRACTION' ? r_mcbond_it 1.029 1.500 ? 529 'X-RAY DIFFRACTION' ? r_mcangle_it 1.668 2.000 ? 862 'X-RAY DIFFRACTION' ? r_scbond_it 2.225 3.000 ? 313 'X-RAY DIFFRACTION' ? r_scangle_it 3.297 4.500 ? 277 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.05 _refine_ls_shell.d_res_low 1.077 _refine_ls_shell.number_reflns_R_work 1512 _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.29 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1M9Z _struct.title 'CRYSTAL STRUCTURE OF HUMAN TGF-BETA TYPE II RECEPTOR LIGAND BINDING DOMAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M9Z _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text 'three finger toxin fold, HORMONE-GROWTH FACTOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 94 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 96 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 119 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 121 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 28 A CYS 61 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 23 SG ? ? A CYS 31 A CYS 48 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 38 A CYS 44 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf4 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 54 A CYS 78 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf5 disulf ? ? A CYS 73 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 98 A CYS 113 1_555 ? ? ? ? ? ? ? 2.054 ? ? disulf6 disulf ? ? A CYS 90 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 115 A CYS 120 1_555 ? ? ? ? ? ? ? 2.048 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 2 ? LYS A 4 ? LEU A 27 LYS A 29 A 2 THR A 26 ? ILE A 28 ? THR A 51 ILE A 53 B 1 ASP A 7 ? PHE A 10 ? ASP A 32 PHE A 35 B 2 ILE A 47 ? HIS A 54 ? ILE A 72 HIS A 79 B 3 VAL A 35 ? LYS A 42 ? VAL A 60 LYS A 67 B 4 THR A 84 ? CYS A 90 ? THR A 109 CYS A 115 B 5 LYS A 76 ? LYS A 78 ? LYS A 101 LYS A 103 C 1 SER A 18 ? MET A 20 ? SER A 43 MET A 45 C 2 ASN A 98 ? ILE A 100 ? ASN A 123 ILE A 125 C 3 CYS A 73 ? ILE A 74 ? CYS A 98 ILE A 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 3 ? N CYS A 28 O SER A 27 ? O SER A 52 B 1 2 N ARG A 9 ? N ARG A 34 O LEU A 49 ? O LEU A 74 B 2 3 O HIS A 54 ? O HIS A 79 N VAL A 35 ? N VAL A 60 B 3 4 N LYS A 42 ? N LYS A 67 O THR A 84 ? O THR A 109 B 4 5 O PHE A 85 ? O PHE A 110 N LYS A 78 ? N LYS A 103 C 1 2 N CYS A 19 ? N CYS A 44 O ILE A 99 ? O ILE A 124 C 2 3 O ILE A 100 ? O ILE A 125 N CYS A 73 ? N CYS A 98 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 910 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 910' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASP A 14 ? ASP A 39 . ? 1_555 ? 2 AC1 7 ASN A 15 ? ASN A 40 . ? 1_555 ? 3 AC1 7 GLN A 16 ? GLN A 41 . ? 1_555 ? 4 AC1 7 TRP A 40 ? TRP A 65 . ? 1_555 ? 5 AC1 7 PHE A 86 ? PHE A 111 . ? 1_555 ? 6 AC1 7 PHE A 101 ? PHE A 126 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 1004 . ? 1_555 ? # _database_PDB_matrix.entry_id 1M9Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1M9Z _atom_sites.fract_transf_matrix[1][1] 0.028192 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024595 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013131 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 26 26 ALA ALA A . n A 1 2 LEU 2 27 27 LEU LEU A . n A 1 3 CYS 3 28 28 CYS CYS A . n A 1 4 LYS 4 29 29 LYS LYS A . n A 1 5 PHE 5 30 30 PHE PHE A . n A 1 6 CYS 6 31 31 CYS CYS A . n A 1 7 ASP 7 32 32 ASP ASP A . n A 1 8 VAL 8 33 33 VAL VAL A . n A 1 9 ARG 9 34 34 ARG ARG A . n A 1 10 PHE 10 35 35 PHE PHE A . n A 1 11 SER 11 36 36 SER SER A . n A 1 12 THR 12 37 37 THR THR A . n A 1 13 CYS 13 38 38 CYS CYS A . n A 1 14 ASP 14 39 39 ASP ASP A . n A 1 15 ASN 15 40 40 ASN ASN A . n A 1 16 GLN 16 41 41 GLN GLN A . n A 1 17 LYS 17 42 42 LYS LYS A . n A 1 18 SER 18 43 43 SER SER A . n A 1 19 CYS 19 44 44 CYS CYS A . n A 1 20 MET 20 45 45 MET MET A . n A 1 21 SER 21 46 46 SER SER A . n A 1 22 ASN 22 47 47 ASN ASN A . n A 1 23 CYS 23 48 48 CYS CYS A . n A 1 24 SER 24 49 49 SER SER A . n A 1 25 ILE 25 50 50 ILE ILE A . n A 1 26 THR 26 51 51 THR THR A . n A 1 27 SER 27 52 52 SER SER A . n A 1 28 ILE 28 53 53 ILE ILE A . n A 1 29 CYS 29 54 54 CYS CYS A . n A 1 30 GLU 30 55 55 GLU GLU A . n A 1 31 LYS 31 56 56 LYS LYS A . n A 1 32 PRO 32 57 57 PRO PRO A . n A 1 33 GLN 33 58 58 GLN GLN A . n A 1 34 GLU 34 59 59 GLU GLU A . n A 1 35 VAL 35 60 60 VAL VAL A . n A 1 36 CYS 36 61 61 CYS CYS A . n A 1 37 VAL 37 62 62 VAL VAL A . n A 1 38 ALA 38 63 63 ALA ALA A . n A 1 39 VAL 39 64 64 VAL VAL A . n A 1 40 TRP 40 65 65 TRP TRP A . n A 1 41 ARG 41 66 66 ARG ARG A . n A 1 42 LYS 42 67 67 LYS LYS A . n A 1 43 ASN 43 68 68 ASN ASN A . n A 1 44 ASP 44 69 69 ASP ASP A . n A 1 45 GLU 45 70 70 GLU GLU A . n A 1 46 ASN 46 71 71 ASN ASN A . n A 1 47 ILE 47 72 72 ILE ILE A . n A 1 48 THR 48 73 73 THR THR A . n A 1 49 LEU 49 74 74 LEU LEU A . n A 1 50 GLU 50 75 75 GLU GLU A . n A 1 51 THR 51 76 76 THR THR A . n A 1 52 VAL 52 77 77 VAL VAL A . n A 1 53 CYS 53 78 78 CYS CYS A . n A 1 54 HIS 54 79 79 HIS HIS A . n A 1 55 ASP 55 80 80 ASP ASP A . n A 1 56 PRO 56 81 81 PRO PRO A . n A 1 57 LYS 57 82 82 LYS LYS A . n A 1 58 LEU 58 83 83 LEU LEU A . n A 1 59 PRO 59 84 84 PRO PRO A . n A 1 60 TYR 60 85 85 TYR TYR A . n A 1 61 HIS 61 86 86 HIS HIS A . n A 1 62 ASP 62 87 87 ASP ASP A . n A 1 63 PHE 63 88 88 PHE PHE A . n A 1 64 ILE 64 89 89 ILE ILE A . n A 1 65 LEU 65 90 90 LEU LEU A . n A 1 66 GLU 66 91 91 GLU GLU A . n A 1 67 ASP 67 92 92 ASP ASP A . n A 1 68 ALA 68 93 93 ALA ALA A . n A 1 69 ALA 69 94 94 ALA ALA A . n A 1 70 SER 70 95 95 SER SER A . n A 1 71 PRO 71 96 96 PRO PRO A . n A 1 72 THR 72 97 97 THR THR A . n A 1 73 CYS 73 98 98 CYS CYS A . n A 1 74 ILE 74 99 99 ILE ILE A . n A 1 75 MET 75 100 100 MET MET A . n A 1 76 LYS 76 101 101 LYS LYS A . n A 1 77 GLU 77 102 102 GLU GLU A . n A 1 78 LYS 78 103 103 LYS LYS A . n A 1 79 LYS 79 104 104 LYS LYS A . n A 1 80 LYS 80 105 105 LYS LYS A . n A 1 81 PRO 81 106 106 PRO PRO A . n A 1 82 GLY 82 107 107 GLY GLY A . n A 1 83 GLU 83 108 108 GLU GLU A . n A 1 84 THR 84 109 109 THR THR A . n A 1 85 PHE 85 110 110 PHE PHE A . n A 1 86 PHE 86 111 111 PHE PHE A . n A 1 87 MET 87 112 112 MET MET A . n A 1 88 CYS 88 113 113 CYS CYS A . n A 1 89 SER 89 114 114 SER SER A . n A 1 90 CYS 90 115 115 CYS CYS A . n A 1 91 SER 91 116 116 SER SER A . n A 1 92 SER 92 117 117 SER SER A . n A 1 93 ASP 93 118 118 ASP ASP A . n A 1 94 GLU 94 119 119 GLU GLU A . n A 1 95 CYS 95 120 120 CYS CYS A . n A 1 96 ASN 96 121 121 ASN ASN A . n A 1 97 ASP 97 122 122 ASP ASP A . n A 1 98 ASN 98 123 123 ASN ASN A . n A 1 99 ILE 99 124 124 ILE ILE A . n A 1 100 ILE 100 125 125 ILE ILE A . n A 1 101 PHE 101 126 126 PHE PHE A . n A 1 102 SER 102 127 127 SER SER A . n A 1 103 GLU 103 128 128 GLU GLU A . n A 1 104 GLU 104 129 129 GLU GLU A . n A 1 105 TYR 105 130 130 TYR TYR A . n A 1 106 ASN 106 131 ? ? ? A . n A 1 107 THR 107 132 ? ? ? A . n A 1 108 SER 108 133 ? ? ? A . n A 1 109 ASN 109 134 ? ? ? A . n A 1 110 PRO 110 135 ? ? ? A . n A 1 111 ASP 111 136 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 910 910 GOL CRY A . C 3 HOH 1 911 1 HOH HOH A . C 3 HOH 2 912 2 HOH HOH A . C 3 HOH 3 913 3 HOH HOH A . C 3 HOH 4 914 4 HOH HOH A . C 3 HOH 5 915 5 HOH HOH A . C 3 HOH 6 916 6 HOH HOH A . C 3 HOH 7 917 7 HOH HOH A . C 3 HOH 8 918 8 HOH HOH A . C 3 HOH 9 919 9 HOH HOH A . C 3 HOH 10 920 10 HOH HOH A . C 3 HOH 11 921 11 HOH HOH A . C 3 HOH 12 922 12 HOH HOH A . C 3 HOH 13 923 13 HOH HOH A . C 3 HOH 14 924 14 HOH HOH A . C 3 HOH 15 925 15 HOH HOH A . C 3 HOH 16 926 16 HOH HOH A . C 3 HOH 17 927 17 HOH HOH A . C 3 HOH 18 928 19 HOH HOH A . C 3 HOH 19 929 20 HOH HOH A . C 3 HOH 20 930 21 HOH HOH A . C 3 HOH 21 931 22 HOH HOH A . C 3 HOH 22 932 23 HOH HOH A . C 3 HOH 23 933 25 HOH HOH A . C 3 HOH 24 934 26 HOH HOH A . C 3 HOH 25 935 27 HOH HOH A . C 3 HOH 26 936 28 HOH HOH A . C 3 HOH 27 937 29 HOH HOH A . C 3 HOH 28 938 30 HOH HOH A . C 3 HOH 29 939 31 HOH HOH A . C 3 HOH 30 940 32 HOH HOH A . C 3 HOH 31 941 33 HOH HOH A . C 3 HOH 32 942 34 HOH HOH A . C 3 HOH 33 943 35 HOH HOH A . C 3 HOH 34 944 36 HOH HOH A . C 3 HOH 35 945 37 HOH HOH A . C 3 HOH 36 946 38 HOH HOH A . C 3 HOH 37 947 39 HOH HOH A . C 3 HOH 38 948 40 HOH HOH A . C 3 HOH 39 949 41 HOH HOH A . C 3 HOH 40 950 42 HOH HOH A . C 3 HOH 41 951 43 HOH HOH A . C 3 HOH 42 952 44 HOH HOH A . C 3 HOH 43 953 45 HOH HOH A . C 3 HOH 44 954 46 HOH HOH A . C 3 HOH 45 955 47 HOH HOH A . C 3 HOH 46 956 48 HOH HOH A . C 3 HOH 47 957 49 HOH HOH A . C 3 HOH 48 958 50 HOH HOH A . C 3 HOH 49 959 51 HOH HOH A . C 3 HOH 50 960 52 HOH HOH A . C 3 HOH 51 961 53 HOH HOH A . C 3 HOH 52 962 54 HOH HOH A . C 3 HOH 53 963 55 HOH HOH A . C 3 HOH 54 964 56 HOH HOH A . C 3 HOH 55 965 57 HOH HOH A . C 3 HOH 56 966 58 HOH HOH A . C 3 HOH 57 967 59 HOH HOH A . C 3 HOH 58 968 60 HOH HOH A . C 3 HOH 59 969 61 HOH HOH A . C 3 HOH 60 970 64 HOH HOH A . C 3 HOH 61 971 65 HOH HOH A . C 3 HOH 62 972 66 HOH HOH A . C 3 HOH 63 973 67 HOH HOH A . C 3 HOH 64 974 68 HOH HOH A . C 3 HOH 65 975 69 HOH HOH A . C 3 HOH 66 976 70 HOH HOH A . C 3 HOH 67 977 71 HOH HOH A . C 3 HOH 68 978 72 HOH HOH A . C 3 HOH 69 979 73 HOH HOH A . C 3 HOH 70 980 74 HOH HOH A . C 3 HOH 71 981 76 HOH HOH A . C 3 HOH 72 982 77 HOH HOH A . C 3 HOH 73 983 78 HOH HOH A . C 3 HOH 74 984 79 HOH HOH A . C 3 HOH 75 985 80 HOH HOH A . C 3 HOH 76 986 81 HOH HOH A . C 3 HOH 77 987 82 HOH HOH A . C 3 HOH 78 988 83 HOH HOH A . C 3 HOH 79 989 84 HOH HOH A . C 3 HOH 80 990 85 HOH HOH A . C 3 HOH 81 991 86 HOH HOH A . C 3 HOH 82 992 87 HOH HOH A . C 3 HOH 83 993 88 HOH HOH A . C 3 HOH 84 994 90 HOH HOH A . C 3 HOH 85 995 91 HOH HOH A . C 3 HOH 86 996 92 HOH HOH A . C 3 HOH 87 997 93 HOH HOH A . C 3 HOH 88 998 94 HOH HOH A . C 3 HOH 89 999 95 HOH HOH A . C 3 HOH 90 1000 96 HOH HOH A . C 3 HOH 91 1001 97 HOH HOH A . C 3 HOH 92 1002 98 HOH HOH A . C 3 HOH 93 1003 99 HOH HOH A . C 3 HOH 94 1004 100 HOH HOH A . C 3 HOH 95 1005 101 HOH HOH A . C 3 HOH 96 1006 102 HOH HOH A . C 3 HOH 97 1007 103 HOH HOH A . C 3 HOH 98 1008 104 HOH HOH A . C 3 HOH 99 1009 105 HOH HOH A . C 3 HOH 100 1010 106 HOH HOH A . C 3 HOH 101 1011 107 HOH HOH A . C 3 HOH 102 1012 110 HOH HOH A . C 3 HOH 103 1013 111 HOH HOH A . C 3 HOH 104 1014 112 HOH HOH A . C 3 HOH 105 1015 113 HOH HOH A . C 3 HOH 106 1016 115 HOH HOH A . C 3 HOH 107 1017 117 HOH HOH A . C 3 HOH 108 1018 118 HOH HOH A . C 3 HOH 109 1019 119 HOH HOH A . C 3 HOH 110 1020 121 HOH HOH A . C 3 HOH 111 1021 123 HOH HOH A . C 3 HOH 112 1022 125 HOH HOH A . C 3 HOH 113 1023 126 HOH HOH A . C 3 HOH 114 1024 127 HOH HOH A . C 3 HOH 115 1025 128 HOH HOH A . C 3 HOH 116 1026 301 HOH HOH A . C 3 HOH 117 1027 304 HOH HOH A . C 3 HOH 118 1028 306 HOH HOH A . C 3 HOH 119 1029 307 HOH HOH A . C 3 HOH 120 1030 309 HOH HOH A . C 3 HOH 121 1031 310 HOH HOH A . C 3 HOH 122 1032 311 HOH HOH A . C 3 HOH 123 1033 314 HOH HOH A . C 3 HOH 124 1034 316 HOH HOH A . C 3 HOH 125 1035 318 HOH HOH A . C 3 HOH 126 1036 319 HOH HOH A . C 3 HOH 127 1037 320 HOH HOH A . C 3 HOH 128 1038 321 HOH HOH A . C 3 HOH 129 1039 322 HOH HOH A . C 3 HOH 130 1040 323 HOH HOH A . C 3 HOH 131 1041 325 HOH HOH A . C 3 HOH 132 1042 326 HOH HOH A . C 3 HOH 133 1043 327 HOH HOH A . C 3 HOH 134 1044 328 HOH HOH A . C 3 HOH 135 1045 329 HOH HOH A . C 3 HOH 136 1046 330 HOH HOH A . C 3 HOH 137 1047 332 HOH HOH A . C 3 HOH 138 1048 336 HOH HOH A . C 3 HOH 139 1049 338 HOH HOH A . C 3 HOH 140 1050 339 HOH HOH A . C 3 HOH 141 1051 340 HOH HOH A . C 3 HOH 142 1052 341 HOH HOH A . C 3 HOH 143 1053 343 HOH HOH A . C 3 HOH 144 1054 344 HOH HOH A . C 3 HOH 145 1055 345 HOH HOH A . C 3 HOH 146 1056 346 HOH HOH A . C 3 HOH 147 1057 349 HOH HOH A . C 3 HOH 148 1058 352 HOH HOH A . C 3 HOH 149 1059 353 HOH HOH A . C 3 HOH 150 1060 354 HOH HOH A . C 3 HOH 151 1061 356 HOH HOH A . C 3 HOH 152 1062 357 HOH HOH A . C 3 HOH 153 1063 358 HOH HOH A . C 3 HOH 154 1064 361 HOH HOH A . C 3 HOH 155 1065 363 HOH HOH A . C 3 HOH 156 1066 366 HOH HOH A . C 3 HOH 157 1067 400 HOH HOH A . C 3 HOH 158 1068 402 HOH HOH A . C 3 HOH 159 1069 403 HOH HOH A . C 3 HOH 160 1070 404 HOH HOH A . C 3 HOH 161 1071 405 HOH HOH A . C 3 HOH 162 1072 406 HOH HOH A . C 3 HOH 163 1073 407 HOH HOH A . C 3 HOH 164 1074 408 HOH HOH A . C 3 HOH 165 1075 409 HOH HOH A . C 3 HOH 166 1076 410 HOH HOH A . C 3 HOH 167 1077 411 HOH HOH A . C 3 HOH 168 1078 412 HOH HOH A . C 3 HOH 169 1079 413 HOH HOH A . C 3 HOH 170 1080 415 HOH HOH A . C 3 HOH 171 1081 416 HOH HOH A . C 3 HOH 172 1082 417 HOH HOH A . C 3 HOH 173 1083 419 HOH HOH A . C 3 HOH 174 1084 420 HOH HOH A . C 3 HOH 175 1085 421 HOH HOH A . C 3 HOH 176 1086 422 HOH HOH A . C 3 HOH 177 1087 423 HOH HOH A . C 3 HOH 178 1088 424 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-09-11 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 4 'Structure model' '_software.version' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 HKL-2000 'data collection' . ? 4 HKL-2000 'data reduction' . ? 5 CNS phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 964 ? ? O A HOH 1069 ? ? 1.70 2 1 O A HOH 963 ? ? O A HOH 1068 ? ? 1.85 3 1 O A HOH 953 ? ? O A HOH 1079 ? ? 1.91 4 1 O A HOH 990 ? ? O A HOH 1083 ? ? 2.03 5 1 SD A MET 45 ? ? O A HOH 1069 ? ? 2.03 6 1 OD1 A ASN 71 ? ? O A HOH 1078 ? ? 2.06 7 1 O A HOH 1035 ? ? O A HOH 1082 ? ? 2.17 8 1 O A GLU 108 ? ? O A HOH 1010 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1016 ? ? 1_555 O A HOH 1079 ? ? 4_565 2.13 2 1 O A HOH 941 ? ? 1_555 O A HOH 1083 ? ? 3_645 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 55 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 55 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.995 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation 0.480 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A GLU 55 ? ? CD A GLU 55 ? ? OE1 A GLU 55 ? ? 97.04 118.30 -21.26 2.00 N 2 1 CG A GLU 55 ? ? CD A GLU 55 ? ? OE2 A GLU 55 ? ? 104.29 118.30 -14.01 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 32 ? ? 58.16 -144.72 2 1 PHE A 126 ? ? -97.57 58.66 3 1 SER A 127 ? ? 175.42 157.09 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id GLU _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 55 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.203 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 55 ? CG ? A GLU 30 CG 2 1 Y 0 A LYS 101 ? CE ? A LYS 76 CE 3 1 Y 0 A LYS 101 ? NZ ? A LYS 76 NZ 4 1 Y 0 A LYS 103 ? CE ? A LYS 78 CE 5 1 Y 0 A LYS 103 ? NZ ? A LYS 78 NZ 6 1 Y 0 A LYS 104 ? CG ? A LYS 79 CG 7 1 Y 0 A LYS 104 ? CD ? A LYS 79 CD 8 1 Y 0 A LYS 104 ? CE ? A LYS 79 CE 9 1 Y 0 A LYS 104 ? NZ ? A LYS 79 NZ 10 1 Y 0 A GLU 128 ? CD ? A GLU 103 CD 11 1 Y 0 A GLU 128 ? OE1 ? A GLU 103 OE1 12 1 Y 0 A GLU 128 ? OE2 ? A GLU 103 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 131 ? A ASN 106 2 1 Y 1 A THR 132 ? A THR 107 3 1 Y 1 A SER 133 ? A SER 108 4 1 Y 1 A ASN 134 ? A ASN 109 5 1 Y 1 A PRO 135 ? A PRO 110 6 1 Y 1 A ASP 136 ? A ASP 111 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #