HEADER OXIDOREDUCTASE 30-JUL-02 1MA0 TITLE TERNARY COMPLEX OF HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE TITLE 2 DEHYDROGENASE WITH NAD+ AND DODECANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE CLASS III CHI CHAIN; ALCOHOL COMPND 5 DEHYDROGENASE (CLASS III), CHI POLYPEPTIDE; FDH; E.C.1.2.1.1; COMPND 6 EC: 1.1.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: APOENZYME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADH5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TG-1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE, CLASS III KEYWDS 2 ALCOHOL DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.C.SANGHANI,H.ROBINSON,W.F.BOSRON,T.D.HURLEY REVDAT 5 14-FEB-24 1MA0 1 REMARK LINK REVDAT 4 24-FEB-09 1MA0 1 VERSN REVDAT 3 01-APR-03 1MA0 1 JRNL REVDAT 2 27-SEP-02 1MA0 1 JRNL REVDAT 1 02-AUG-02 1MA0 0 JRNL AUTH P.C.SANGHANI,H.ROBINSON,W.F.BOSRON,T.D.HURLEY JRNL TITL HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE. JRNL TITL 2 STRUCTURES OF APO, BINARY, AND INHIBITORY TERNARY COMPLEXES. JRNL REF BIOCHEMISTRY V. 41 10778 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12196016 JRNL DOI 10.1021/BI0257639 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2277 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4066 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 551 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 35.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000016782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2652,1.2835,1.2836 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, POTASSIUM PHOSPHATE, ZINC REMARK 280 SULPHATE, DITHIOTHREITOL, PH 7.1, VAPOR DIFFUSION, SITTING AT REMARK 280 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.46000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.33000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 233.19000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.33000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 233.19000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.73000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 155.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 -0.94 -59.26 REMARK 500 LEU A 64 -169.82 -75.40 REMARK 500 GLN A 95 88.15 -153.47 REMARK 500 PHE A 145 44.03 -92.93 REMARK 500 CYS A 173 -96.01 -160.71 REMARK 500 ILE A 268 -51.02 -129.33 REMARK 500 VAL A 341 -50.93 -140.40 REMARK 500 HIS B 66 12.43 -143.39 REMARK 500 PHE B 145 42.70 -83.45 REMARK 500 LYS B 167 -57.32 -123.74 REMARK 500 CYS B 173 -84.71 -159.70 REMARK 500 LEU B 199 40.16 -109.16 REMARK 500 ILE B 268 -54.62 -127.96 REMARK 500 VAL B 341 -54.60 -139.29 REMARK 500 ILE B 367 -62.28 -103.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 44 SG REMARK 620 2 HIS A 66 NE2 89.5 REMARK 620 3 GLU A 67 OE2 102.8 116.1 REMARK 620 4 CYS A 173 SG 133.3 113.2 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 CYS A 99 SG 105.4 REMARK 620 3 CYS A 102 SG 114.0 105.1 REMARK 620 4 CYS A 110 SG 108.1 119.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A6602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 186 O REMARK 620 2 LYS A 187 O 67.1 REMARK 620 3 GLU A 189 OE2 140.8 83.0 REMARK 620 4 TYR A 263 OH 91.4 93.5 64.8 REMARK 620 5 HOH A6728 O 91.0 157.5 114.1 81.8 REMARK 620 6 HOH A6762 O 79.4 112.2 137.5 146.0 65.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B6501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A6799 O REMARK 620 2 HOH A6804 O 80.4 REMARK 620 3 ALA B 186 O 80.0 145.0 REMARK 620 4 LYS B 187 O 111.2 145.9 68.9 REMARK 620 5 GLU B 189 OE2 138.3 68.6 140.2 83.6 REMARK 620 6 TYR B 263 OH 146.7 93.8 86.9 92.0 65.3 REMARK 620 7 HOH B6684 O 73.2 58.7 87.8 154.4 110.3 75.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B6376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 44 SG REMARK 620 2 HIS B 66 NE2 101.1 REMARK 620 3 GLU B 67 OE2 106.1 111.4 REMARK 620 4 CYS B 173 SG 132.2 99.3 105.9 REMARK 620 5 DAO B6378 C12 78.1 67.1 175.9 70.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B6375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 96 SG REMARK 620 2 CYS B 99 SG 111.5 REMARK 620 3 CYS B 102 SG 113.2 105.7 REMARK 620 4 CYS B 110 SG 104.1 118.0 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 6375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 6376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 6501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 6602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 6002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 5377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 6377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO A 5378 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO B 6378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6H RELATED DB: PDB REMARK 900 RELATED ID: 1M6W RELATED DB: PDB DBREF 1MA0 A 1 373 UNP P11766 ADHX_HUMAN 1 373 DBREF 1MA0 B 1 373 UNP P11766 ADHX_HUMAN 1 373 SEQRES 1 A 373 ALA ASN GLU VAL ILE LYS CYS LYS ALA ALA VAL ALA TRP SEQRES 2 A 373 GLU ALA GLY LYS PRO LEU SER ILE GLU GLU ILE GLU VAL SEQRES 3 A 373 ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS ILE ILE SEQRES 4 A 373 ALA THR ALA VAL CYS HIS THR ASP ALA TYR THR LEU SER SEQRES 5 A 373 GLY ALA ASP PRO GLU GLY CYS PHE PRO VAL ILE LEU GLY SEQRES 6 A 373 HIS GLU GLY ALA GLY ILE VAL GLU SER VAL GLY GLU GLY SEQRES 7 A 373 VAL THR LYS LEU LYS ALA GLY ASP THR VAL ILE PRO LEU SEQRES 8 A 373 TYR ILE PRO GLN CYS GLY GLU CYS LYS PHE CYS LEU ASN SEQRES 9 A 373 PRO LYS THR ASN LEU CYS GLN LYS ILE ARG VAL THR GLN SEQRES 10 A 373 GLY LYS GLY LEU MET PRO ASP GLY THR SER ARG PHE THR SEQRES 11 A 373 CYS LYS GLY LYS THR ILE LEU HIS TYR MET GLY THR SER SEQRES 12 A 373 THR PHE SER GLU TYR THR VAL VAL ALA ASP ILE SER VAL SEQRES 13 A 373 ALA LYS ILE ASP PRO LEU ALA PRO LEU ASP LYS VAL CYS SEQRES 14 A 373 LEU LEU GLY CYS GLY ILE SER THR GLY TYR GLY ALA ALA SEQRES 15 A 373 VAL ASN THR ALA LYS LEU GLU PRO GLY SER VAL CYS ALA SEQRES 16 A 373 VAL PHE GLY LEU GLY GLY VAL GLY LEU ALA VAL ILE MET SEQRES 17 A 373 GLY CYS LYS VAL ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 A 373 ASP ILE ASN LYS ASP LYS PHE ALA ARG ALA LYS GLU PHE SEQRES 19 A 373 GLY ALA THR GLU CYS ILE ASN PRO GLN ASP PHE SER LYS SEQRES 20 A 373 PRO ILE GLN GLU VAL LEU ILE GLU MET THR ASP GLY GLY SEQRES 21 A 373 VAL ASP TYR SER PHE GLU CYS ILE GLY ASN VAL LYS VAL SEQRES 22 A 373 MET ARG ALA ALA LEU GLU ALA CYS HIS LYS GLY TRP GLY SEQRES 23 A 373 VAL SER VAL VAL VAL GLY VAL ALA ALA SER GLY GLU GLU SEQRES 24 A 373 ILE ALA THR ARG PRO PHE GLN LEU VAL THR GLY ARG THR SEQRES 25 A 373 TRP LYS GLY THR ALA PHE GLY GLY TRP LYS SER VAL GLU SEQRES 26 A 373 SER VAL PRO LYS LEU VAL SER GLU TYR MET SER LYS LYS SEQRES 27 A 373 ILE LYS VAL ASP GLU PHE VAL THR HIS ASN LEU SER PHE SEQRES 28 A 373 ASP GLU ILE ASN LYS ALA PHE GLU LEU MET HIS SER GLY SEQRES 29 A 373 LYS SER ILE ARG THR VAL VAL LYS ILE SEQRES 1 B 373 ALA ASN GLU VAL ILE LYS CYS LYS ALA ALA VAL ALA TRP SEQRES 2 B 373 GLU ALA GLY LYS PRO LEU SER ILE GLU GLU ILE GLU VAL SEQRES 3 B 373 ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS ILE ILE SEQRES 4 B 373 ALA THR ALA VAL CYS HIS THR ASP ALA TYR THR LEU SER SEQRES 5 B 373 GLY ALA ASP PRO GLU GLY CYS PHE PRO VAL ILE LEU GLY SEQRES 6 B 373 HIS GLU GLY ALA GLY ILE VAL GLU SER VAL GLY GLU GLY SEQRES 7 B 373 VAL THR LYS LEU LYS ALA GLY ASP THR VAL ILE PRO LEU SEQRES 8 B 373 TYR ILE PRO GLN CYS GLY GLU CYS LYS PHE CYS LEU ASN SEQRES 9 B 373 PRO LYS THR ASN LEU CYS GLN LYS ILE ARG VAL THR GLN SEQRES 10 B 373 GLY LYS GLY LEU MET PRO ASP GLY THR SER ARG PHE THR SEQRES 11 B 373 CYS LYS GLY LYS THR ILE LEU HIS TYR MET GLY THR SER SEQRES 12 B 373 THR PHE SER GLU TYR THR VAL VAL ALA ASP ILE SER VAL SEQRES 13 B 373 ALA LYS ILE ASP PRO LEU ALA PRO LEU ASP LYS VAL CYS SEQRES 14 B 373 LEU LEU GLY CYS GLY ILE SER THR GLY TYR GLY ALA ALA SEQRES 15 B 373 VAL ASN THR ALA LYS LEU GLU PRO GLY SER VAL CYS ALA SEQRES 16 B 373 VAL PHE GLY LEU GLY GLY VAL GLY LEU ALA VAL ILE MET SEQRES 17 B 373 GLY CYS LYS VAL ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 B 373 ASP ILE ASN LYS ASP LYS PHE ALA ARG ALA LYS GLU PHE SEQRES 19 B 373 GLY ALA THR GLU CYS ILE ASN PRO GLN ASP PHE SER LYS SEQRES 20 B 373 PRO ILE GLN GLU VAL LEU ILE GLU MET THR ASP GLY GLY SEQRES 21 B 373 VAL ASP TYR SER PHE GLU CYS ILE GLY ASN VAL LYS VAL SEQRES 22 B 373 MET ARG ALA ALA LEU GLU ALA CYS HIS LYS GLY TRP GLY SEQRES 23 B 373 VAL SER VAL VAL VAL GLY VAL ALA ALA SER GLY GLU GLU SEQRES 24 B 373 ILE ALA THR ARG PRO PHE GLN LEU VAL THR GLY ARG THR SEQRES 25 B 373 TRP LYS GLY THR ALA PHE GLY GLY TRP LYS SER VAL GLU SEQRES 26 B 373 SER VAL PRO LYS LEU VAL SER GLU TYR MET SER LYS LYS SEQRES 27 B 373 ILE LYS VAL ASP GLU PHE VAL THR HIS ASN LEU SER PHE SEQRES 28 B 373 ASP GLU ILE ASN LYS ALA PHE GLU LEU MET HIS SER GLY SEQRES 29 B 373 LYS SER ILE ARG THR VAL VAL LYS ILE HET ZN A5375 1 HET ZN A5376 1 HET K A6602 1 HET PO4 A5001 5 HET PO4 A6002 5 HET NAD A5377 44 HET DAO A5378 14 HET ZN B6375 1 HET ZN B6376 1 HET K B6501 1 HET NAD B6377 44 HET DAO B6378 14 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM DAO LAURIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 K 2(K 1+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 8 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 DAO 2(C12 H24 O2) FORMUL 15 HOH *551(H2 O) HELIX 1 1 CYS A 44 GLY A 53 1 10 HELIX 2 2 ILE A 113 LYS A 119 1 7 HELIX 3 3 PRO A 164 CYS A 169 1 6 HELIX 4 4 LEU A 170 GLY A 172 5 3 HELIX 5 5 CYS A 173 ASN A 184 1 12 HELIX 6 6 GLY A 200 ALA A 213 1 14 HELIX 7 7 ASN A 224 ASP A 226 5 3 HELIX 8 8 LYS A 227 GLY A 235 1 9 HELIX 9 9 ASN A 241 PHE A 245 5 5 HELIX 10 10 PRO A 248 THR A 257 1 10 HELIX 11 11 ASN A 270 ALA A 280 1 11 HELIX 12 12 PRO A 304 THR A 309 1 6 HELIX 13 13 ALA A 317 TRP A 321 5 5 HELIX 14 14 LYS A 322 SER A 336 1 15 HELIX 15 15 VAL A 341 GLU A 343 5 3 HELIX 16 16 GLU A 353 SER A 363 1 11 HELIX 17 17 CYS B 44 SER B 52 1 9 HELIX 18 18 ILE B 113 LYS B 119 1 7 HELIX 19 19 PRO B 164 CYS B 169 1 6 HELIX 20 20 LEU B 170 GLY B 172 5 3 HELIX 21 21 CYS B 173 ASN B 184 1 12 HELIX 22 22 GLY B 200 ALA B 213 1 14 HELIX 23 23 ASN B 224 ASP B 226 5 3 HELIX 24 24 LYS B 227 GLY B 235 1 9 HELIX 25 25 ASN B 241 PHE B 245 5 5 HELIX 26 26 PRO B 248 THR B 257 1 10 HELIX 27 27 ASN B 270 ALA B 280 1 11 HELIX 28 28 PRO B 304 THR B 309 1 6 HELIX 29 29 ALA B 317 TRP B 321 5 5 HELIX 30 30 LYS B 322 SER B 336 1 15 HELIX 31 31 VAL B 341 GLU B 343 5 3 HELIX 32 32 GLU B 353 SER B 363 1 11 SHEET 1 A 4 ILE A 5 VAL A 11 0 SHEET 2 A 4 SER A 20 VAL A 26 -1 O ILE A 24 N CYS A 7 SHEET 3 A 4 PHE A 129 CYS A 131 -1 O THR A 130 N GLU A 25 SHEET 4 A 4 LYS A 134 ILE A 136 -1 O LYS A 134 N CYS A 131 SHEET 1 B 5 VAL A 156 LYS A 158 0 SHEET 2 B 5 THR A 87 PRO A 90 -1 N ILE A 89 O ALA A 157 SHEET 3 B 5 GLU A 67 VAL A 75 -1 N GLY A 70 O VAL A 88 SHEET 4 B 5 GLU A 33 VAL A 43 -1 N LYS A 37 O ILE A 71 SHEET 5 B 5 TYR A 148 ALA A 152 -1 O THR A 149 N ILE A 36 SHEET 1 C 6 VAL A 156 LYS A 158 0 SHEET 2 C 6 THR A 87 PRO A 90 -1 N ILE A 89 O ALA A 157 SHEET 3 C 6 GLU A 67 VAL A 75 -1 N GLY A 70 O VAL A 88 SHEET 4 C 6 GLU A 33 VAL A 43 -1 N LYS A 37 O ILE A 71 SHEET 5 C 6 ARG A 368 LYS A 372 -1 O VAL A 371 N THR A 41 SHEET 6 C 6 VAL A 345 SER A 350 1 N LEU A 349 O LYS A 372 SHEET 1 D 6 GLU A 238 ILE A 240 0 SHEET 2 D 6 ARG A 217 VAL A 221 1 N GLY A 220 O GLU A 238 SHEET 3 D 6 VAL A 193 PHE A 197 1 N CYS A 194 O ARG A 217 SHEET 4 D 6 TYR A 263 GLU A 266 1 O PHE A 265 N PHE A 197 SHEET 5 D 6 VAL A 287 VAL A 290 1 O VAL A 289 N SER A 264 SHEET 6 D 6 THR A 312 GLY A 315 1 O LYS A 314 N SER A 288 SHEET 1 E 2 ILE A 300 THR A 302 0 SHEET 2 E 2 ILE B 300 THR B 302 -1 O ILE B 300 N THR A 302 SHEET 1 F 4 ILE B 5 VAL B 11 0 SHEET 2 F 4 SER B 20 VAL B 26 -1 O ILE B 24 N CYS B 7 SHEET 3 F 4 PHE B 129 CYS B 131 -1 O THR B 130 N GLU B 25 SHEET 4 F 4 LYS B 134 ILE B 136 -1 O LYS B 134 N CYS B 131 SHEET 1 G 5 VAL B 156 LYS B 158 0 SHEET 2 G 5 THR B 87 PRO B 90 -1 N ILE B 89 O ALA B 157 SHEET 3 G 5 GLU B 67 VAL B 75 -1 N GLY B 70 O VAL B 88 SHEET 4 G 5 GLU B 33 ALA B 42 -1 N LYS B 37 O ILE B 71 SHEET 5 G 5 TYR B 148 ALA B 152 -1 O THR B 149 N ILE B 36 SHEET 1 H 6 VAL B 156 LYS B 158 0 SHEET 2 H 6 THR B 87 PRO B 90 -1 N ILE B 89 O ALA B 157 SHEET 3 H 6 GLU B 67 VAL B 75 -1 N GLY B 70 O VAL B 88 SHEET 4 H 6 GLU B 33 ALA B 42 -1 N LYS B 37 O ILE B 71 SHEET 5 H 6 ARG B 368 LYS B 372 -1 O VAL B 371 N THR B 41 SHEET 6 H 6 VAL B 345 SER B 350 1 N LEU B 349 O LYS B 372 SHEET 1 I 6 GLU B 238 ILE B 240 0 SHEET 2 I 6 ARG B 217 VAL B 221 1 N GLY B 220 O GLU B 238 SHEET 3 I 6 VAL B 193 PHE B 197 1 N CYS B 194 O ILE B 219 SHEET 4 I 6 TYR B 263 GLU B 266 1 O PHE B 265 N PHE B 197 SHEET 5 I 6 VAL B 287 VAL B 290 1 O VAL B 289 N SER B 264 SHEET 6 I 6 THR B 312 GLY B 315 1 O LYS B 314 N SER B 288 LINK SG CYS A 44 ZN ZN A5376 1555 1555 2.37 LINK NE2 HIS A 66 ZN ZN A5376 1555 1555 2.27 LINK OE2 GLU A 67 ZN ZN A5376 1555 1555 2.39 LINK SG CYS A 96 ZN ZN A5375 1555 1555 2.31 LINK SG CYS A 99 ZN ZN A5375 1555 1555 2.39 LINK SG CYS A 102 ZN ZN A5375 1555 1555 2.33 LINK SG CYS A 110 ZN ZN A5375 1555 1555 2.25 LINK SG CYS A 173 ZN ZN A5376 1555 1555 2.48 LINK O ALA A 186 K K A6602 1555 1555 2.91 LINK O LYS A 187 K K A6602 1555 1555 2.97 LINK OE2 GLU A 189 K K A6602 1555 1555 3.07 LINK OH TYR A 263 K K A6602 1555 1555 2.87 LINK K K A6602 O HOH A6728 1555 1555 2.83 LINK K K A6602 O HOH A6762 1555 1555 3.16 LINK O HOH A6799 K K B6501 1555 1555 3.09 LINK O HOH A6804 K K B6501 1555 1555 2.84 LINK SG CYS B 44 ZN ZN B6376 1555 1555 2.43 LINK NE2 HIS B 66 ZN ZN B6376 1555 1555 2.35 LINK OE2 GLU B 67 ZN ZN B6376 1555 1555 2.34 LINK SG CYS B 96 ZN ZN B6375 1555 1555 2.34 LINK SG CYS B 99 ZN ZN B6375 1555 1555 2.33 LINK SG CYS B 102 ZN ZN B6375 1555 1555 2.32 LINK SG CYS B 110 ZN ZN B6375 1555 1555 2.30 LINK SG CYS B 173 ZN ZN B6376 1555 1555 2.64 LINK O ALA B 186 K K B6501 1555 1555 2.89 LINK O LYS B 187 K K B6501 1555 1555 2.84 LINK OE2 GLU B 189 K K B6501 1555 1555 2.96 LINK OH TYR B 263 K K B6501 1555 1555 2.90 LINK ZN ZN B6376 C12 DAO B6378 1555 1555 2.42 LINK K K B6501 O HOH B6684 1555 1555 3.01 CISPEP 1 PHE A 60 PRO A 61 0 -0.26 CISPEP 2 PHE B 60 PRO B 61 0 0.16 SITE 1 AC1 4 CYS A 96 CYS A 99 CYS A 102 CYS A 110 SITE 1 AC2 6 CYS A 44 HIS A 66 GLU A 67 CYS A 173 SITE 2 AC2 6 ARG A 368 DAO A5378 SITE 1 AC3 4 CYS B 96 CYS B 99 CYS B 102 CYS B 110 SITE 1 AC4 5 CYS B 44 HIS B 66 GLU B 67 CYS B 173 SITE 2 AC4 5 DAO B6378 SITE 1 AC5 7 HOH A6799 HOH A6804 ALA B 186 LYS B 187 SITE 2 AC5 7 GLU B 189 TYR B 263 HOH B6684 SITE 1 AC6 5 ALA A 186 LYS A 187 GLU A 189 TYR A 263 SITE 2 AC6 5 HOH A6728 SITE 1 AC7 5 LYS A 314 HOH A6762 HOH A6794 HOH A6833 SITE 2 AC7 5 LYS B 314 SITE 1 AC8 4 LYS A 83 LYS A 158 LYS B 83 HOH B6780 SITE 1 AC9 30 HIS A 45 THR A 46 THR A 177 GLY A 198 SITE 2 AC9 30 GLY A 200 GLY A 201 VAL A 202 ASP A 222 SITE 3 AC9 30 ILE A 223 LYS A 227 CYS A 267 ILE A 268 SITE 4 AC9 30 VAL A 291 GLY A 292 VAL A 293 THR A 316 SITE 5 AC9 30 ALA A 317 PHE A 318 ARG A 368 DAO A5378 SITE 6 AC9 30 HOH A6605 HOH A6606 HOH A6608 HOH A6609 SITE 7 AC9 30 HOH A6635 HOH A6656 HOH A6660 HOH A6767 SITE 8 AC9 30 HOH A6788 HOH A6792 SITE 1 BC1 31 HIS B 45 CYS B 173 THR B 177 GLY B 198 SITE 2 BC1 31 GLY B 200 GLY B 201 VAL B 202 ASP B 222 SITE 3 BC1 31 ILE B 223 CYS B 267 ILE B 268 VAL B 291 SITE 4 BC1 31 GLY B 292 VAL B 293 THR B 316 ALA B 317 SITE 5 BC1 31 PHE B 318 ARG B 368 DAO B6378 HOH B6518 SITE 6 BC1 31 HOH B6536 HOH B6545 HOH B6551 HOH B6558 SITE 7 BC1 31 HOH B6576 HOH B6604 HOH B6616 HOH B6673 SITE 8 BC1 31 HOH B6758 HOH B6779 HOH B6781 SITE 1 BC2 12 CYS A 44 THR A 46 HIS A 66 TYR A 92 SITE 2 BC2 12 GLN A 111 ARG A 114 CYS A 173 ZN A5376 SITE 3 BC2 12 NAD A5377 HOH A6659 HOH A6723 LYS B 283 SITE 1 BC3 12 LYS A 283 CYS B 44 THR B 46 HIS B 66 SITE 2 BC3 12 TYR B 92 GLN B 111 ARG B 114 CYS B 173 SITE 3 BC3 12 ALA B 317 ZN B6376 NAD B6377 HOH B6603 CRYST1 78.660 78.660 310.920 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003216 0.00000