data_1MDG # _entry.id 1MDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MDG pdb_00001mdg 10.2210/pdb1mdg/pdb NDB UR0024 ? ? RCSB RCSB016835 ? ? WWPDB D_1000016835 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-12 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-09-28 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_dist_value' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 6 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MDG _pdbx_database_status.recvd_initial_deposition_date 2002-08-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pan, B.C.' 1 'Xiong, Y.' 2 'Shi, K.' 3 'Sundaralingam, M.' 4 # _citation.id primary _citation.title 'An Eight-Stranded Helical Fragment in RNA Crystal Structure: Implications for Tetraplex Interaction' _citation.journal_abbrev Structure _citation.journal_volume 11 _citation.page_first 825 _citation.page_last 831 _citation.year 2003 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12842045 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(03)00108-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pan, B.C.' 1 ? primary 'Xiong, Y.' 2 ? primary 'Shi, K.' 3 ? primary 'Sundaralingam, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3'" 1995.093 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 5 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'U(BGM)AGGU' _entity_poly.pdbx_seq_one_letter_code_can UGAGGU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 BGM n 1 3 A n 1 4 G n 1 5 G n 1 6 U n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U URI A . n A 1 2 BGM 2 2 2 BGM GUA A . n A 1 3 A 3 3 3 A ADE A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 G 5 5 5 G GUA A . n A 1 6 U 6 6 6 U URI A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 101 NA NA1 A . C 2 NA 1 102 102 NA NA1 A . D 2 NA 1 103 103 NA NA1 A . E 2 NA 1 104 104 NA NA1 A . F 2 NA 1 105 105 NA NA1 A . G 3 NCO 1 201 201 NCO COB A . H 4 HOH 1 301 301 HOH WAT A . H 4 HOH 2 302 302 HOH WAT A . H 4 HOH 3 303 303 HOH WAT A . H 4 HOH 4 304 304 HOH WAT A . H 4 HOH 5 305 305 HOH WAT A . H 4 HOH 6 306 316 HOH WAT A . H 4 HOH 7 307 307 HOH WAT A . H 4 HOH 8 308 308 HOH WAT A . H 4 HOH 9 309 309 HOH WAT A . H 4 HOH 10 310 310 HOH WAT A . H 4 HOH 11 312 312 HOH WAT A . H 4 HOH 12 313 313 HOH WAT A . H 4 HOH 13 314 314 HOH WAT A . H 4 HOH 14 315 315 HOH WAT A . H 4 HOH 15 316 317 HOH WAT A . H 4 HOH 16 411 411 HOH WAT A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1MDG _cell.length_a 35.956 _cell.length_b 35.956 _cell.length_c 38.045 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1MDG _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1MDG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 20.17 _exptl_crystal.density_Matthews 1.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pdbx_details 'MPD, MgCl2, Cobalt(III)hexammine, ethidine bromide, sodium cacodylate, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 'Cobalt(III)hexammine' ? ? ? 1 4 1 'ethidine bromide' ? ? ? 1 5 1 'sodium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ENRAF-NONIUS _diffrn_detector.pdbx_collection_date 2001-05-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9195 1.0 2 0.9192 1.0 3 0.800 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9195, 0.9192, 0.800' # _reflns.entry_id 1MDG _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 30.0 _reflns.number_all 3807 _reflns.number_obs 3800 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 41.7 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.309 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 364 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1MDG _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 3821 _refine.ls_number_reflns_obs 3763 _refine.ls_number_reflns_R_free 381 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.172 _refine.ls_R_factor_R_free 0.194 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 128 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 156 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 30.0 # _database_PDB_matrix.entry_id 1MDG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MDG _struct.title 'An Alternating Antiparallel Octaplex in an RNA Crystal Structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MDG _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tetraplex, base tetrads, base octads, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1MDG _struct_ref.pdbx_db_accession 1MDG _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MDG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1MDG _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The three strands of the tetraplex is generated by the four fold axis' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 1 "O3'" ? ? ? 1_555 A BGM 2 P ? ? A U 1 A BGM 2 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale2 covale both ? A BGM 2 "O3'" ? ? ? 1_555 A A 3 P ? ? A BGM 2 A A 3 1_555 ? ? ? ? ? ? ? 1.633 ? ? metalc1 metalc ? ? A BGM 2 O6 ? ? ? 1_555 B NA . NA ? ? A BGM 2 A NA 101 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc2 metalc ? ? A BGM 2 O6 ? ? ? 1_555 C NA . NA ? ? A BGM 2 A NA 102 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc3 metalc ? ? A G 4 O6 ? ? ? 1_555 D NA . NA ? ? A G 4 A NA 103 1_555 ? ? ? ? ? ? ? 2.995 ? ? metalc4 metalc ? ? A G 4 O6 ? ? ? 1_555 E NA . NA ? ? A G 4 A NA 104 1_555 ? ? ? ? ? ? ? 2.752 ? ? metalc5 metalc ? ? A G 5 O6 ? ? ? 1_555 E NA . NA ? ? A G 5 A NA 104 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc6 metalc ? ? A G 5 O6 ? ? ? 1_555 F NA . NA ? ? A G 5 A NA 105 1_555 ? ? ? ? ? ? ? 2.830 ? ? metalc7 metalc ? ? A U 6 O4 ? ? ? 1_555 F NA . NA ? ? A U 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.703 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 4 ? A G 4 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 71.8 ? 2 O6 ? A G 5 ? A G 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 69.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 16 'BINDING SITE FOR RESIDUE NA A 101' AC2 Software A NA 102 ? 20 'BINDING SITE FOR RESIDUE NA A 102' AC3 Software A NA 103 ? 16 'BINDING SITE FOR RESIDUE NA A 103' AC4 Software A NA 104 ? 16 'BINDING SITE FOR RESIDUE NA A 104' AC5 Software A NA 105 ? 12 'BINDING SITE FOR RESIDUE NA A 105' AC6 Software A NCO 201 ? 12 'BINDING SITE FOR RESIDUE NCO A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 BGM A 2 ? BGM A 2 . ? 3_555 ? 2 AC1 16 BGM A 2 ? BGM A 2 . ? 6_556 ? 3 AC1 16 BGM A 2 ? BGM A 2 . ? 7_556 ? 4 AC1 16 BGM A 2 ? BGM A 2 . ? 1_555 ? 5 AC1 16 BGM A 2 ? BGM A 2 . ? 4_555 ? 6 AC1 16 BGM A 2 ? BGM A 2 . ? 5_556 ? 7 AC1 16 BGM A 2 ? BGM A 2 . ? 2_555 ? 8 AC1 16 BGM A 2 ? BGM A 2 . ? 8_556 ? 9 AC1 16 NA C . ? NA A 102 . ? 4_555 ? 10 AC1 16 NA C . ? NA A 102 . ? 5_556 ? 11 AC1 16 NA C . ? NA A 102 . ? 6_556 ? 12 AC1 16 NA C . ? NA A 102 . ? 7_556 ? 13 AC1 16 NA C . ? NA A 102 . ? 8_556 ? 14 AC1 16 NA C . ? NA A 102 . ? 3_555 ? 15 AC1 16 NA C . ? NA A 102 . ? 2_555 ? 16 AC1 16 NA C . ? NA A 102 . ? 1_555 ? 17 AC2 20 BGM A 2 ? BGM A 2 . ? 3_555 ? 18 AC2 20 BGM A 2 ? BGM A 2 . ? 1_555 ? 19 AC2 20 BGM A 2 ? BGM A 2 . ? 2_555 ? 20 AC2 20 BGM A 2 ? BGM A 2 . ? 4_555 ? 21 AC2 20 A A 3 ? A A 3 . ? 3_555 ? 22 AC2 20 A A 3 ? A A 3 . ? 2_555 ? 23 AC2 20 A A 3 ? A A 3 . ? 1_555 ? 24 AC2 20 A A 3 ? A A 3 . ? 4_555 ? 25 AC2 20 NA B . ? NA A 101 . ? 4_555 ? 26 AC2 20 NA B . ? NA A 101 . ? 3_555 ? 27 AC2 20 NA B . ? NA A 101 . ? 1_555 ? 28 AC2 20 NA B . ? NA A 101 . ? 2_555 ? 29 AC2 20 NA B . ? NA A 101 . ? 5_556 ? 30 AC2 20 NA B . ? NA A 101 . ? 6_556 ? 31 AC2 20 NA B . ? NA A 101 . ? 7_556 ? 32 AC2 20 NA B . ? NA A 101 . ? 8_556 ? 33 AC2 20 NA D . ? NA A 103 . ? 4_555 ? 34 AC2 20 NA D . ? NA A 103 . ? 3_555 ? 35 AC2 20 NA D . ? NA A 103 . ? 2_555 ? 36 AC2 20 NA D . ? NA A 103 . ? 1_555 ? 37 AC3 16 A A 3 ? A A 3 . ? 3_555 ? 38 AC3 16 A A 3 ? A A 3 . ? 1_555 ? 39 AC3 16 A A 3 ? A A 3 . ? 2_555 ? 40 AC3 16 A A 3 ? A A 3 . ? 4_555 ? 41 AC3 16 G A 4 ? G A 4 . ? 4_555 ? 42 AC3 16 G A 4 ? G A 4 . ? 1_555 ? 43 AC3 16 G A 4 ? G A 4 . ? 2_555 ? 44 AC3 16 G A 4 ? G A 4 . ? 3_555 ? 45 AC3 16 NA C . ? NA A 102 . ? 3_555 ? 46 AC3 16 NA C . ? NA A 102 . ? 1_555 ? 47 AC3 16 NA C . ? NA A 102 . ? 2_555 ? 48 AC3 16 NA C . ? NA A 102 . ? 4_555 ? 49 AC3 16 NA E . ? NA A 104 . ? 4_555 ? 50 AC3 16 NA E . ? NA A 104 . ? 3_555 ? 51 AC3 16 NA E . ? NA A 104 . ? 2_555 ? 52 AC3 16 NA E . ? NA A 104 . ? 1_555 ? 53 AC4 16 G A 4 ? G A 4 . ? 2_555 ? 54 AC4 16 G A 4 ? G A 4 . ? 4_555 ? 55 AC4 16 G A 4 ? G A 4 . ? 1_555 ? 56 AC4 16 G A 4 ? G A 4 . ? 3_555 ? 57 AC4 16 G A 5 ? G A 5 . ? 2_555 ? 58 AC4 16 G A 5 ? G A 5 . ? 4_555 ? 59 AC4 16 G A 5 ? G A 5 . ? 1_555 ? 60 AC4 16 G A 5 ? G A 5 . ? 3_555 ? 61 AC4 16 NA D . ? NA A 103 . ? 1_555 ? 62 AC4 16 NA D . ? NA A 103 . ? 2_555 ? 63 AC4 16 NA D . ? NA A 103 . ? 3_555 ? 64 AC4 16 NA D . ? NA A 103 . ? 4_555 ? 65 AC4 16 NA F . ? NA A 105 . ? 4_555 ? 66 AC4 16 NA F . ? NA A 105 . ? 3_555 ? 67 AC4 16 NA F . ? NA A 105 . ? 2_555 ? 68 AC4 16 NA F . ? NA A 105 . ? 1_555 ? 69 AC5 12 G A 5 ? G A 5 . ? 2_555 ? 70 AC5 12 G A 5 ? G A 5 . ? 3_555 ? 71 AC5 12 G A 5 ? G A 5 . ? 1_555 ? 72 AC5 12 G A 5 ? G A 5 . ? 4_555 ? 73 AC5 12 U A 6 ? U A 6 . ? 2_555 ? 74 AC5 12 U A 6 ? U A 6 . ? 1_555 ? 75 AC5 12 U A 6 ? U A 6 . ? 3_555 ? 76 AC5 12 U A 6 ? U A 6 . ? 4_555 ? 77 AC5 12 NA E . ? NA A 104 . ? 4_555 ? 78 AC5 12 NA E . ? NA A 104 . ? 3_555 ? 79 AC5 12 NA E . ? NA A 104 . ? 2_555 ? 80 AC5 12 NA E . ? NA A 104 . ? 1_555 ? 81 AC6 12 BGM A 2 ? BGM A 2 . ? 1_555 ? 82 AC6 12 BGM A 2 ? BGM A 2 . ? 8_556 ? 83 AC6 12 A A 3 ? A A 3 . ? 8_556 ? 84 AC6 12 A A 3 ? A A 3 . ? 1_555 ? 85 AC6 12 G A 5 ? G A 5 . ? 14_455 ? 86 AC6 12 G A 5 ? G A 5 . ? 12_455 ? 87 AC6 12 U A 6 ? U A 6 . ? 12_455 ? 88 AC6 12 U A 6 ? U A 6 . ? 14_455 ? 89 AC6 12 HOH H . ? HOH A 308 . ? 8_556 ? 90 AC6 12 HOH H . ? HOH A 308 . ? 1_555 ? 91 AC6 12 HOH H . ? HOH A 314 . ? 14_455 ? 92 AC6 12 HOH H . ? HOH A 314 . ? 12_455 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A U 6 ? ? "C3'" A U 6 ? ? "O3'" A U 6 ? ? 142.76 113.70 29.06 1.60 N 2 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 95.43 105.80 -10.37 1.00 N 3 1 N1 A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 80.07 112.00 -31.93 1.10 N 4 1 "C1'" A U 6 ? ? "C2'" A U 6 ? ? "O2'" A U 6 ? ? 133.32 110.60 22.72 3.00 N 5 1 "C3'" A U 6 ? ? "C2'" A U 6 ? ? "O2'" A U 6 ? ? 82.44 113.30 -30.86 2.90 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 4 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.064 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id BGM _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id BGM _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 101 ? B NA . 2 1 A NA 102 ? C NA . 3 1 A NA 103 ? D NA . 4 1 A NA 104 ? E NA . 5 1 A NA 105 ? F NA . 6 1 A NCO 201 ? G NCO . 7 1 A HOH 305 ? H HOH . 8 1 A HOH 315 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BGM P P N N 38 BGM OP1 O N N 39 BGM OP2 O N N 40 BGM "O5'" O N N 41 BGM "C5'" C N N 42 BGM "C4'" C N R 43 BGM "O4'" O N N 44 BGM "C1'" C N R 45 BGM N9 N Y N 46 BGM C8 C Y N 47 BGM N7 N Y N 48 BGM C5 C Y N 49 BGM C4 C Y N 50 BGM N3 N N N 51 BGM C2 C N N 52 BGM N2 N N N 53 BGM N1 N N N 54 BGM C6 C N N 55 BGM O6 O N N 56 BGM "C2'" C N N 57 BGM "C3'" C N S 58 BGM "O3'" O N N 59 BGM OP3 O N N 60 BGM BR BR N N 61 BGM HOP2 H N N 62 BGM "H5'" H N N 63 BGM "H5''" H N N 64 BGM "H4'" H N N 65 BGM "H1'" H N N 66 BGM H21 H N N 67 BGM H22 H N N 68 BGM H1 H N N 69 BGM "H2'" H N N 70 BGM "H2''" H N N 71 BGM "H3'" H N N 72 BGM "HO3'" H N N 73 BGM HOP3 H N N 74 G OP3 O N N 75 G P P N N 76 G OP1 O N N 77 G OP2 O N N 78 G "O5'" O N N 79 G "C5'" C N N 80 G "C4'" C N R 81 G "O4'" O N N 82 G "C3'" C N S 83 G "O3'" O N N 84 G "C2'" C N R 85 G "O2'" O N N 86 G "C1'" C N R 87 G N9 N Y N 88 G C8 C Y N 89 G N7 N Y N 90 G C5 C Y N 91 G C6 C N N 92 G O6 O N N 93 G N1 N N N 94 G C2 C N N 95 G N2 N N N 96 G N3 N N N 97 G C4 C Y N 98 G HOP3 H N N 99 G HOP2 H N N 100 G "H5'" H N N 101 G "H5''" H N N 102 G "H4'" H N N 103 G "H3'" H N N 104 G "HO3'" H N N 105 G "H2'" H N N 106 G "HO2'" H N N 107 G "H1'" H N N 108 G H8 H N N 109 G H1 H N N 110 G H21 H N N 111 G H22 H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 NA NA NA N N 116 NCO CO CO N N 117 NCO N1 N N N 118 NCO N2 N N N 119 NCO N3 N N N 120 NCO N4 N N N 121 NCO N5 N N N 122 NCO N6 N N N 123 NCO HN11 H N N 124 NCO HN12 H N N 125 NCO HN13 H N N 126 NCO HN21 H N N 127 NCO HN22 H N N 128 NCO HN23 H N N 129 NCO HN31 H N N 130 NCO HN32 H N N 131 NCO HN33 H N N 132 NCO HN41 H N N 133 NCO HN42 H N N 134 NCO HN43 H N N 135 NCO HN51 H N N 136 NCO HN52 H N N 137 NCO HN53 H N N 138 NCO HN61 H N N 139 NCO HN62 H N N 140 NCO HN63 H N N 141 U OP3 O N N 142 U P P N N 143 U OP1 O N N 144 U OP2 O N N 145 U "O5'" O N N 146 U "C5'" C N N 147 U "C4'" C N R 148 U "O4'" O N N 149 U "C3'" C N S 150 U "O3'" O N N 151 U "C2'" C N R 152 U "O2'" O N N 153 U "C1'" C N R 154 U N1 N N N 155 U C2 C N N 156 U O2 O N N 157 U N3 N N N 158 U C4 C N N 159 U O4 O N N 160 U C5 C N N 161 U C6 C N N 162 U HOP3 H N N 163 U HOP2 H N N 164 U "H5'" H N N 165 U "H5''" H N N 166 U "H4'" H N N 167 U "H3'" H N N 168 U "HO3'" H N N 169 U "H2'" H N N 170 U "HO2'" H N N 171 U "H1'" H N N 172 U H3 H N N 173 U H5 H N N 174 U H6 H N N 175 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 BGM P OP1 doub N N 40 BGM P OP2 sing N N 41 BGM P "O5'" sing N N 42 BGM P OP3 sing N N 43 BGM OP2 HOP2 sing N N 44 BGM "O5'" "C5'" sing N N 45 BGM "C5'" "C4'" sing N N 46 BGM "C5'" "H5'" sing N N 47 BGM "C5'" "H5''" sing N N 48 BGM "C4'" "O4'" sing N N 49 BGM "C4'" "C3'" sing N N 50 BGM "C4'" "H4'" sing N N 51 BGM "O4'" "C1'" sing N N 52 BGM "C1'" N9 sing N N 53 BGM "C1'" "C2'" sing N N 54 BGM "C1'" "H1'" sing N N 55 BGM N9 C8 sing Y N 56 BGM N9 C4 sing Y N 57 BGM C8 N7 doub Y N 58 BGM C8 BR sing N N 59 BGM N7 C5 sing Y N 60 BGM C5 C4 doub Y N 61 BGM C5 C6 sing N N 62 BGM C4 N3 sing N N 63 BGM N3 C2 doub N N 64 BGM C2 N2 sing N N 65 BGM C2 N1 sing N N 66 BGM N2 H21 sing N N 67 BGM N2 H22 sing N N 68 BGM N1 C6 sing N N 69 BGM N1 H1 sing N N 70 BGM C6 O6 doub N N 71 BGM "C2'" "C3'" sing N N 72 BGM "C2'" "H2'" sing N N 73 BGM "C2'" "H2''" sing N N 74 BGM "C3'" "O3'" sing N N 75 BGM "C3'" "H3'" sing N N 76 BGM "O3'" "HO3'" sing N N 77 BGM OP3 HOP3 sing N N 78 G OP3 P sing N N 79 G OP3 HOP3 sing N N 80 G P OP1 doub N N 81 G P OP2 sing N N 82 G P "O5'" sing N N 83 G OP2 HOP2 sing N N 84 G "O5'" "C5'" sing N N 85 G "C5'" "C4'" sing N N 86 G "C5'" "H5'" sing N N 87 G "C5'" "H5''" sing N N 88 G "C4'" "O4'" sing N N 89 G "C4'" "C3'" sing N N 90 G "C4'" "H4'" sing N N 91 G "O4'" "C1'" sing N N 92 G "C3'" "O3'" sing N N 93 G "C3'" "C2'" sing N N 94 G "C3'" "H3'" sing N N 95 G "O3'" "HO3'" sing N N 96 G "C2'" "O2'" sing N N 97 G "C2'" "C1'" sing N N 98 G "C2'" "H2'" sing N N 99 G "O2'" "HO2'" sing N N 100 G "C1'" N9 sing N N 101 G "C1'" "H1'" sing N N 102 G N9 C8 sing Y N 103 G N9 C4 sing Y N 104 G C8 N7 doub Y N 105 G C8 H8 sing N N 106 G N7 C5 sing Y N 107 G C5 C6 sing N N 108 G C5 C4 doub Y N 109 G C6 O6 doub N N 110 G C6 N1 sing N N 111 G N1 C2 sing N N 112 G N1 H1 sing N N 113 G C2 N2 sing N N 114 G C2 N3 doub N N 115 G N2 H21 sing N N 116 G N2 H22 sing N N 117 G N3 C4 sing N N 118 HOH O H1 sing N N 119 HOH O H2 sing N N 120 NCO CO N1 sing N N 121 NCO CO N2 sing N N 122 NCO CO N3 sing N N 123 NCO CO N4 sing N N 124 NCO CO N5 sing N N 125 NCO CO N6 sing N N 126 NCO N1 HN11 sing N N 127 NCO N1 HN12 sing N N 128 NCO N1 HN13 sing N N 129 NCO N2 HN21 sing N N 130 NCO N2 HN22 sing N N 131 NCO N2 HN23 sing N N 132 NCO N3 HN31 sing N N 133 NCO N3 HN32 sing N N 134 NCO N3 HN33 sing N N 135 NCO N4 HN41 sing N N 136 NCO N4 HN42 sing N N 137 NCO N4 HN43 sing N N 138 NCO N5 HN51 sing N N 139 NCO N5 HN52 sing N N 140 NCO N5 HN53 sing N N 141 NCO N6 HN61 sing N N 142 NCO N6 HN62 sing N N 143 NCO N6 HN63 sing N N 144 U OP3 P sing N N 145 U OP3 HOP3 sing N N 146 U P OP1 doub N N 147 U P OP2 sing N N 148 U P "O5'" sing N N 149 U OP2 HOP2 sing N N 150 U "O5'" "C5'" sing N N 151 U "C5'" "C4'" sing N N 152 U "C5'" "H5'" sing N N 153 U "C5'" "H5''" sing N N 154 U "C4'" "O4'" sing N N 155 U "C4'" "C3'" sing N N 156 U "C4'" "H4'" sing N N 157 U "O4'" "C1'" sing N N 158 U "C3'" "O3'" sing N N 159 U "C3'" "C2'" sing N N 160 U "C3'" "H3'" sing N N 161 U "O3'" "HO3'" sing N N 162 U "C2'" "O2'" sing N N 163 U "C2'" "C1'" sing N N 164 U "C2'" "H2'" sing N N 165 U "O2'" "HO2'" sing N N 166 U "C1'" N1 sing N N 167 U "C1'" "H1'" sing N N 168 U N1 C2 sing N N 169 U N1 C6 sing N N 170 U C2 O2 doub N N 171 U C2 N3 sing N N 172 U N3 C4 sing N N 173 U N3 H3 sing N N 174 U C4 O4 doub N N 175 U C4 C5 sing N N 176 U C5 C6 doub N N 177 U C5 H5 sing N N 178 U C6 H6 sing N N 179 # _atom_sites.entry_id 1MDG _atom_sites.fract_transf_matrix[1][1] 0.027812 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027812 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026285 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CO N NA O P # loop_