data_1MFK # _entry.id 1MFK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MFK pdb_00001mfk 10.2210/pdb1mfk/pdb RCSB RCSB016874 ? ? WWPDB D_1000016874 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MFK _pdbx_database_status.recvd_initial_deposition_date 2002-08-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fourmy, D.' 1 'Guittet, E.' 2 'Yoshizawa, S.' 3 # _citation.id primary _citation.title 'Structure of Prokaryotic SECIS mRNA Hairpin and its Interaction with Elongation Factor SELB' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 324 _citation.page_first 137 _citation.page_last 150 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12421564 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)01030-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fourmy, D.' 1 ? primary 'Guittet, E.' 2 ? primary 'Yoshizawa, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(P*GP*GP*CP*GP*GP*UP*UP*GP*CP*AP*GP*GP*UP*CP*UP*GP*CP*AP*CP*CP*GP*CP*C)-3'" _entity.formula_weight 7386.423 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'SECIS mRNA hairpin' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGGUUGCAGGUCUGCACCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGGUUGCAGGUCUGCACCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 G n 1 9 C n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 C n 1 15 U n 1 16 G n 1 17 C n 1 18 A n 1 19 C n 1 20 C n 1 21 G n 1 22 C n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THE SEQUENCE is from ESCHERICHIA COLI. T7 RNA polymerase in vitro transcription.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1MFK _struct_ref.pdbx_db_accession 1MFK _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MFK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1MFK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 275 ambient 6.4 ? ? K 2 278 ambient 6.4 ? ? K 3 288 ambient 6.4 ? ? K 4 293 ambient 6.4 ? ? K 5 303 ambient 6.4 ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;1mM SECIS RNA non-label; 2mM phosphate buffer, pH 6.4; 100% D2O ; '100% D2O' 2 ;1mM SECIS RNA non-label; 2mM phosphate buffer, pH 6.4; 90% H2O, 10% D2O ; '90% H2O/10% D2O' 3 '1mM SECIS RNA U-15N, 13C; 2mM phosphate buffer, pH 6.4; 100% D2O' '100% D2O' 4 '1mM SECIS RNA U-15N, 13C; 2mM phosphate buffer, pH 6.4; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '1mM SECIS RNA U-15N; 2mM phosphate buffer, pH 6.4; 100% D2O' '100% D2O' 6 '1mM SECIS RNA U-15N; 2mM phosphate buffer, pH 6.4; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 600 2 ? Bruker DRX 800 # _pdbx_nmr_refine.entry_id 1MFK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details '260 NOE-derived distance constraints, 72 dihedral angle restraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1MFK _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Discover ? 'structure solution' 'MOLECULAR SIMULATIONS INC.' 1 Discover ? refinement 'MOLECULAR SIMULATIONS INC.' 2 AURELIA ? 'data analysis' ? 3 XwinNMR ? processing ? 4 Gifa ? processing ? 5 # _exptl.entry_id 1MFK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1MFK _struct.title 'Structure of Prokaryotic SECIS mRNA Hairpin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MFK _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA tetraloop, (A/U)GNN tetraloop family, SelB, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 5 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 5 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 5 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 15 N3 ? ? A A 10 A U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 15 O4 ? ? A A 10 A U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N3 ? ? ? 1_555 A C 14 N4 ? ? A G 11 A C 14 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A U 15 O4 ? ? A G 11 A U 15 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1MFK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MFK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-13 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.97 108.50 4.47 0.70 N 2 1 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 112.82 108.50 4.32 0.70 N 3 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.16 108.50 4.66 0.70 N 4 1 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 112.95 108.50 4.45 0.70 N 5 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.54 108.50 5.04 0.70 N 6 1 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 114.97 108.50 6.47 0.70 N 7 1 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 115.71 108.50 7.21 0.70 N 8 1 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.92 108.50 5.42 0.70 N 9 1 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.63 108.50 5.13 0.70 N 10 1 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.07 108.50 4.57 0.70 N 11 2 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.45 108.50 4.95 0.70 N 12 2 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.38 108.50 4.88 0.70 N 13 2 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.45 108.50 4.95 0.70 N 14 2 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.07 108.50 4.57 0.70 N 15 2 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.17 108.50 5.67 0.70 N 16 2 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.11 108.50 4.61 0.70 N 17 2 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.39 108.50 4.89 0.70 N 18 3 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.65 108.50 5.15 0.70 N 19 3 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.05 108.50 4.55 0.70 N 20 3 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.79 108.50 4.29 0.70 N 21 3 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.12 108.50 4.62 0.70 N 22 3 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 112.97 108.50 4.47 0.70 N 23 3 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.74 108.50 4.24 0.70 N 24 3 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 116.38 108.50 7.88 0.70 N 25 3 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.48 108.50 4.98 0.70 N 26 3 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.35 108.50 4.85 0.70 N 27 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.99 108.50 4.49 0.70 N 28 4 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.76 108.50 5.26 0.70 N 29 4 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.23 108.50 4.73 0.70 N 30 4 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 115.72 108.50 7.22 0.70 N 31 4 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.88 108.50 4.38 0.70 N 32 4 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.11 108.50 4.61 0.70 N 33 4 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.20 108.50 4.70 0.70 N 34 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.93 108.50 4.43 0.70 N 35 5 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 112.80 108.50 4.30 0.70 N 36 5 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.15 108.50 5.65 0.70 N 37 5 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.08 108.50 4.58 0.70 N 38 5 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.92 108.50 5.42 0.70 N 39 5 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.24 108.50 4.74 0.70 N 40 5 "O4'" A G 16 ? ? "C1'" A G 16 ? ? N9 A G 16 ? ? 114.34 108.50 5.84 0.70 N 41 5 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.85 108.50 4.35 0.70 N 42 5 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.73 108.50 4.23 0.70 N 43 5 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.11 108.50 4.61 0.70 N 44 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.84 108.50 4.34 0.70 N 45 6 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 112.72 108.50 4.22 0.70 N 46 6 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.18 108.50 4.68 0.70 N 47 6 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.77 108.50 4.27 0.70 N 48 6 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.13 108.50 5.63 0.70 N 49 6 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.97 108.50 4.47 0.70 N 50 6 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.74 108.50 4.24 0.70 N 51 6 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.91 108.50 4.41 0.70 N 52 6 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.28 108.50 4.78 0.70 N 53 7 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.95 108.50 4.45 0.70 N 54 7 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 114.31 108.50 5.81 0.70 N 55 7 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.75 108.50 5.25 0.70 N 56 7 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.71 108.50 6.21 0.70 N 57 7 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.15 108.50 4.65 0.70 N 58 7 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.83 108.50 4.33 0.70 N 59 7 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.45 108.50 4.95 0.70 N 60 7 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.72 108.50 4.22 0.70 N 61 7 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.12 108.50 4.62 0.70 N 62 8 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 114.04 108.50 5.54 0.70 N 63 8 "C4'" A U 13 ? ? "C3'" A U 13 ? ? "C2'" A U 13 ? ? 96.17 102.60 -6.43 1.00 N 64 8 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.20 108.50 4.70 0.70 N 65 8 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.30 108.50 4.80 0.70 N 66 8 "O4'" A G 16 ? ? "C1'" A G 16 ? ? N9 A G 16 ? ? 115.59 108.50 7.09 0.70 N 67 8 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.41 108.50 4.91 0.70 N 68 8 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.72 108.50 4.22 0.70 N 69 8 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.19 108.50 4.69 0.70 N 70 9 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.99 108.50 4.49 0.70 N 71 9 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.06 108.50 4.56 0.70 N 72 9 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.46 108.50 4.96 0.70 N 73 9 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.07 108.50 4.57 0.70 N 74 9 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.74 108.50 5.24 0.70 N 75 9 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.75 108.50 4.25 0.70 N 76 9 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.91 108.50 4.41 0.70 N 77 9 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.08 108.50 4.58 0.70 N 78 10 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.74 108.50 4.24 0.70 N 79 10 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.27 108.50 4.77 0.70 N 80 10 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.44 108.50 4.94 0.70 N 81 10 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.15 109.70 -5.55 0.70 N 82 10 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 117.29 108.50 8.79 0.70 N 83 10 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.89 108.50 5.39 0.70 N 84 10 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.67 108.50 5.17 0.70 N 85 10 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.39 108.50 4.89 0.70 N 86 10 "O4'" A G 16 ? ? "C1'" A G 16 ? ? N9 A G 16 ? ? 113.82 108.50 5.32 0.70 N 87 10 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.05 108.50 4.55 0.70 N 88 10 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.83 108.50 4.33 0.70 N 89 10 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.28 108.50 4.78 0.70 N 90 11 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.90 108.50 4.40 0.70 N 91 11 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.06 108.50 4.56 0.70 N 92 11 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.52 108.50 6.02 0.70 N 93 11 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.34 108.50 4.84 0.70 N 94 11 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 114.29 108.50 5.79 0.70 N 95 11 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.09 108.50 4.59 0.70 N 96 11 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.01 108.50 4.51 0.70 N 97 11 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.27 108.50 4.77 0.70 N 98 12 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.30 108.50 4.80 0.70 N 99 12 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.83 108.50 4.33 0.70 N 100 12 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 115.02 108.50 6.52 0.70 N 101 12 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.98 108.50 4.48 0.70 N 102 12 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.42 108.50 4.92 0.70 N 103 12 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.03 108.50 4.53 0.70 N 104 12 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.99 108.50 4.49 0.70 N 105 12 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.16 108.50 4.66 0.70 N 106 12 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 112.75 108.50 4.25 0.70 N 107 13 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.53 108.50 5.03 0.70 N 108 13 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.53 108.50 5.03 0.70 N 109 13 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.89 108.50 5.39 0.70 N 110 13 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.95 108.50 5.45 0.70 N 111 13 "O4'" A G 16 ? ? "C1'" A G 16 ? ? N9 A G 16 ? ? 113.76 108.50 5.26 0.70 N 112 13 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.39 108.50 4.89 0.70 N 113 13 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.72 108.50 4.22 0.70 N 114 13 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.37 108.50 4.87 0.70 N 115 14 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 116 14 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.75 108.50 5.25 0.70 N 117 14 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.30 108.50 4.80 0.70 N 118 15 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.19 108.50 4.69 0.70 N 119 15 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.88 108.50 4.38 0.70 N 120 15 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.11 108.50 4.61 0.70 N 121 15 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.99 109.70 -4.71 0.70 N 122 15 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.40 108.50 5.90 0.70 N 123 15 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.00 108.50 4.50 0.70 N 124 15 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.14 108.50 5.64 0.70 N 125 15 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.74 108.50 4.24 0.70 N 126 15 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.94 108.50 4.44 0.70 N 127 15 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.34 108.50 4.84 0.70 N 128 16 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.92 108.50 4.42 0.70 N 129 16 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.95 108.50 4.45 0.70 N 130 16 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.82 108.50 5.32 0.70 N 131 16 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.46 108.50 4.96 0.70 N 132 16 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.52 108.50 5.02 0.70 N 133 16 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 116.16 108.50 7.66 0.70 N 134 16 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 112.97 108.50 4.47 0.70 N 135 16 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.41 108.50 4.91 0.70 N 136 16 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.01 108.50 4.51 0.70 N 137 16 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.07 108.50 4.57 0.70 N 138 17 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.25 108.50 4.75 0.70 N 139 17 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 114.20 108.50 5.70 0.70 N 140 17 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.13 108.50 4.63 0.70 N 141 17 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.77 108.50 4.27 0.70 N 142 17 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 114.00 108.50 5.50 0.70 N 143 17 "O4'" A A 10 ? ? "C1'" A A 10 ? ? N9 A A 10 ? ? 113.06 108.50 4.56 0.70 N 144 17 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 115.06 108.50 6.56 0.70 N 145 17 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 114.58 108.50 6.08 0.70 N 146 17 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 113.04 108.50 4.54 0.70 N 147 17 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.84 108.50 4.34 0.70 N 148 17 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.16 108.50 4.66 0.70 N 149 18 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.26 108.50 4.76 0.70 N 150 18 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 112.82 108.50 4.32 0.70 N 151 18 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.91 108.50 4.41 0.70 N 152 18 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.96 108.50 4.46 0.70 N 153 18 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 115.56 108.50 7.06 0.70 N 154 18 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.16 108.50 4.66 0.70 N 155 18 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.90 108.50 4.40 0.70 N 156 18 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.00 108.50 4.50 0.70 N 157 19 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.16 108.50 4.66 0.70 N 158 19 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.91 108.50 5.41 0.70 N 159 19 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.72 108.50 4.22 0.70 N 160 19 "O4'" A G 11 ? ? "C1'" A G 11 ? ? N9 A G 11 ? ? 112.79 108.50 4.29 0.70 N 161 19 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 114.23 108.50 5.73 0.70 N 162 19 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.37 108.50 4.87 0.70 N 163 20 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.28 108.50 4.78 0.70 N 164 20 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.07 108.50 4.57 0.70 N 165 20 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.75 108.50 4.25 0.70 N 166 20 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.76 108.50 4.26 0.70 N 167 20 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.76 108.50 5.26 0.70 N 168 20 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 112.76 108.50 4.26 0.70 N 169 20 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.80 108.50 4.30 0.70 N 170 20 "O4'" A C 19 ? ? "C1'" A C 19 ? ? N1 A C 19 ? ? 112.98 108.50 4.48 0.70 N 171 20 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.72 108.50 4.22 0.70 N 172 20 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.15 108.50 4.65 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 6 ? ? 0.075 'SIDE CHAIN' 2 1 A A 18 ? ? 0.054 'SIDE CHAIN' 3 1 G A 21 ? ? 0.066 'SIDE CHAIN' 4 2 G A 16 ? ? 0.067 'SIDE CHAIN' 5 3 G A 4 ? ? 0.060 'SIDE CHAIN' 6 3 U A 7 ? ? 0.066 'SIDE CHAIN' 7 3 C A 14 ? ? 0.084 'SIDE CHAIN' 8 3 G A 16 ? ? 0.071 'SIDE CHAIN' 9 3 C A 17 ? ? 0.084 'SIDE CHAIN' 10 4 G A 4 ? ? 0.055 'SIDE CHAIN' 11 4 G A 8 ? ? 0.066 'SIDE CHAIN' 12 4 G A 11 ? ? 0.066 'SIDE CHAIN' 13 4 G A 21 ? ? 0.072 'SIDE CHAIN' 14 5 G A 4 ? ? 0.064 'SIDE CHAIN' 15 6 U A 7 ? ? 0.094 'SIDE CHAIN' 16 6 G A 21 ? ? 0.069 'SIDE CHAIN' 17 7 G A 8 ? ? 0.083 'SIDE CHAIN' 18 7 A A 18 ? ? 0.062 'SIDE CHAIN' 19 8 G A 5 ? ? 0.065 'SIDE CHAIN' 20 8 G A 21 ? ? 0.068 'SIDE CHAIN' 21 9 G A 4 ? ? 0.065 'SIDE CHAIN' 22 9 C A 9 ? ? 0.075 'SIDE CHAIN' 23 9 C A 14 ? ? 0.057 'SIDE CHAIN' 24 9 G A 16 ? ? 0.073 'SIDE CHAIN' 25 9 A A 18 ? ? 0.059 'SIDE CHAIN' 26 10 G A 21 ? ? 0.080 'SIDE CHAIN' 27 11 G A 4 ? ? 0.067 'SIDE CHAIN' 28 11 U A 7 ? ? 0.082 'SIDE CHAIN' 29 11 G A 8 ? ? 0.070 'SIDE CHAIN' 30 11 G A 11 ? ? 0.074 'SIDE CHAIN' 31 11 U A 15 ? ? 0.082 'SIDE CHAIN' 32 11 G A 21 ? ? 0.074 'SIDE CHAIN' 33 12 G A 4 ? ? 0.066 'SIDE CHAIN' 34 12 C A 22 ? ? 0.063 'SIDE CHAIN' 35 13 G A 4 ? ? 0.060 'SIDE CHAIN' 36 13 C A 17 ? ? 0.081 'SIDE CHAIN' 37 14 G A 4 ? ? 0.079 'SIDE CHAIN' 38 14 G A 11 ? ? 0.064 'SIDE CHAIN' 39 14 U A 15 ? ? 0.074 'SIDE CHAIN' 40 14 G A 16 ? ? 0.070 'SIDE CHAIN' 41 14 G A 21 ? ? 0.081 'SIDE CHAIN' 42 15 G A 4 ? ? 0.086 'SIDE CHAIN' 43 15 U A 7 ? ? 0.059 'SIDE CHAIN' 44 15 G A 21 ? ? 0.083 'SIDE CHAIN' 45 16 C A 14 ? ? 0.070 'SIDE CHAIN' 46 16 G A 21 ? ? 0.071 'SIDE CHAIN' 47 18 G A 4 ? ? 0.059 'SIDE CHAIN' 48 18 G A 11 ? ? 0.050 'SIDE CHAIN' 49 18 U A 13 ? ? 0.083 'SIDE CHAIN' 50 19 G A 4 ? ? 0.086 'SIDE CHAIN' 51 19 G A 11 ? ? 0.076 'SIDE CHAIN' 52 19 G A 12 ? ? 0.058 'SIDE CHAIN' 53 19 G A 21 ? ? 0.078 'SIDE CHAIN' 54 20 G A 4 ? ? 0.070 'SIDE CHAIN' 55 20 G A 21 ? ? 0.070 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MFK 'double helix' 1MFK 'a-form double helix' 1MFK 'hairpin loop' 1MFK 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 23 1_555 0.231 0.059 -0.174 -5.996 -7.645 -1.987 1 A_G1:C23_A A 1 ? A 23 ? 19 1 1 A G 2 1_555 A C 22 1_555 -0.143 0.009 -0.234 -12.731 -20.613 -0.030 2 A_G2:C22_A A 2 ? A 22 ? 19 1 1 A C 3 1_555 A G 21 1_555 0.672 -0.176 0.191 -9.350 -15.840 -2.097 3 A_C3:G21_A A 3 ? A 21 ? 19 1 1 A G 4 1_555 A C 20 1_555 0.405 0.011 0.287 -4.729 -13.801 -3.952 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A G 5 1_555 A C 19 1_555 0.432 -0.041 0.630 9.469 -15.628 -3.893 5 A_G5:C19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 -0.504 0.143 -0.010 -0.509 -23.914 -9.117 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 8 1_555 A C 17 1_555 0.330 0.031 -0.315 -7.353 -10.906 -0.873 7 A_G8:C17_A A 8 ? A 17 ? 19 1 1 A C 9 1_555 A G 16 1_555 0.101 0.048 -0.075 0.210 -12.047 0.765 8 A_C9:G16_A A 9 ? A 16 ? 19 1 1 A A 10 1_555 A U 15 1_555 0.653 -0.005 -1.049 -20.951 -13.312 -0.709 9 A_A10:U15_A A 10 ? A 15 ? 20 1 1 A G 11 1_555 A C 14 1_555 7.158 -4.193 -0.996 5.528 15.811 8.218 10 A_G11:C14_A A 11 ? A 14 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 23 1_555 A G 2 1_555 A C 22 1_555 0.203 -1.867 3.261 2.073 12.020 30.526 -5.153 -0.041 2.384 21.770 -3.755 32.819 1 AA_G1G2:C22C23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A G 2 1_555 A C 22 1_555 A C 3 1_555 A G 21 1_555 0.023 -1.737 3.061 -0.162 0.861 35.902 -2.931 -0.059 3.020 1.396 0.264 35.912 2 AA_G2C3:G21C22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A C 3 1_555 A G 21 1_555 A G 4 1_555 A C 20 1_555 -0.024 -1.683 2.839 2.006 11.773 30.531 -4.565 0.312 2.060 21.359 -3.639 32.732 3 AA_C3G4:C20G21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A G 5 1_555 A C 19 1_555 -0.254 -1.675 2.753 -3.704 1.279 28.129 -3.661 -0.193 2.686 2.615 7.574 28.395 4 AA_G4G5:C19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A G 5 1_555 A C 19 1_555 A U 6 1_555 A A 18 1_555 0.054 -2.749 3.171 4.697 8.463 28.426 -6.799 0.722 2.257 16.636 -9.233 29.997 5 AA_G5U6:A18C19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 8 1_555 A C 17 1_555 -0.109 -2.306 3.329 7.999 18.175 43.901 -4.114 0.697 2.213 22.967 -10.108 47.981 6 AA_U6G8:C17A18_AA A 6 ? A 18 ? A 8 ? A 17 ? 1 A G 8 1_555 A C 17 1_555 A C 9 1_555 A G 16 1_555 -0.143 -2.500 2.929 -2.550 1.847 26.254 -5.893 -0.277 2.751 4.047 5.587 26.439 7 AA_G8C9:G16C17_AA A 8 ? A 17 ? A 9 ? A 16 ? 1 A C 9 1_555 A G 16 1_555 A A 10 1_555 A U 15 1_555 0.099 -1.741 3.812 7.334 19.514 28.413 -5.864 0.955 2.174 34.497 -12.965 35.113 8 AA_C9A10:U15G16_AA A 9 ? A 16 ? A 10 ? A 15 ? 1 A A 10 1_555 A U 15 1_555 A G 11 1_555 A C 14 1_555 0.189 0.013 2.683 -5.374 -0.007 57.618 0.014 -0.430 2.657 -0.007 5.562 57.846 9 AA_A10G11:C14U15_AA A 10 ? A 15 ? A 11 ? A 14 ? #