data_1MG8 # _entry.id 1MG8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MG8 pdb_00001mg8 10.2210/pdb1mg8/pdb RCSB RCSB016892 ? ? WWPDB D_1000016892 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id trt001000160.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MG8 _pdbx_database_status.recvd_initial_deposition_date 2002-08-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tashiro, M.' 1 'Okubo, S.' 2 'Shimotakahara, S.' 3 'Hatanaka, H.' 4 'Yasuda, H.' 5 'Kainosho, M.' 6 'Yokoyama, S.' 7 'Shindo, H.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease. ; J.Biomol.NMR 25 153 156 2003 JBNME9 NE 0925-2738 0800 ? 12652124 10.1023/A:1022254432039 1 ;Mutations in the parkin gene causes autosomal recessive juvenile parkinsonism ; Nature 392 605 608 1998 NATUAS UK 0028-0836 0006 ? ? 10.1038/33416 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tashiro, M.' 1 ? primary 'Okubo, S.' 2 ? primary 'Shimotakahara, S.' 3 ? primary 'Hatanaka, H.' 4 ? primary 'Yasuda, H.' 5 ? primary 'Kainosho, M.' 6 ? primary 'Yokoyama, S.' 7 ? primary 'Shindo, H.' 8 ? 1 'Kitada, T.' 9 ? 1 'Asakawa, S.' 10 ? 1 'Hattori, N.' 11 ? 1 'Matsumine, H.' 12 ? 1 'Yamamura, Y.' 13 ? 1 'Minosima, S.' 14 ? 1 'Yokochi, M.' 15 ? 1 'Mizuno, Y.' 16 ? 1 'Shimizu, N.' 17 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Parkin _entity.formula_weight 8918.294 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'ubiquitin-like domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MGMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRRR _entity_poly.pdbx_seq_one_letter_code_can MGMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRRR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier trt001000160.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 MET n 1 4 ILE n 1 5 VAL n 1 6 PHE n 1 7 VAL n 1 8 ARG n 1 9 PHE n 1 10 ASN n 1 11 SER n 1 12 SER n 1 13 TYR n 1 14 GLY n 1 15 PHE n 1 16 PRO n 1 17 VAL n 1 18 GLU n 1 19 VAL n 1 20 ASP n 1 21 SER n 1 22 ASP n 1 23 THR n 1 24 SER n 1 25 ILE n 1 26 LEU n 1 27 GLN n 1 28 LEU n 1 29 LYS n 1 30 GLU n 1 31 VAL n 1 32 VAL n 1 33 ALA n 1 34 LYS n 1 35 ARG n 1 36 GLN n 1 37 GLY n 1 38 VAL n 1 39 PRO n 1 40 ALA n 1 41 ASP n 1 42 GLN n 1 43 LEU n 1 44 ARG n 1 45 VAL n 1 46 ILE n 1 47 PHE n 1 48 ALA n 1 49 GLY n 1 50 LYS n 1 51 GLU n 1 52 LEU n 1 53 PRO n 1 54 ASN n 1 55 HIS n 1 56 LEU n 1 57 THR n 1 58 VAL n 1 59 GLN n 1 60 ASN n 1 61 CYS n 1 62 ASP n 1 63 LEU n 1 64 GLU n 1 65 GLN n 1 66 GLN n 1 67 SER n 1 68 ILE n 1 69 VAL n 1 70 HIS n 1 71 ILE n 1 72 VAL n 1 73 GLN n 1 74 ARG n 1 75 PRO n 1 76 ARG n 1 77 ARG n 1 78 ARG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'house mouse' _entity_src_nat.pdbx_organism_scientific 'Mus musculus' _entity_src_nat.pdbx_ncbi_taxonomy_id 10090 _entity_src_nat.genus Mus _entity_src_nat.species ? _entity_src_nat.strain 'BL21 (DE3)' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name pET28b _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRKN2_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRRR _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession Q9WVS6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MG8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 78 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WVS6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 78 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1MG8 MET A 1 ? UNP Q9WVS6 ? ? 'initiating methionine' 1 1 1 1MG8 GLY A 2 ? UNP Q9WVS6 ? ? 'cloning artifact' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM ubiquitin-like domain U-15N,13C; 25mM acetate buffer NA, 2mM dithiothreitol-d10' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DMX 500 2 ? Bruker DRX 600 3 ? Varian INOVA 600 # _pdbx_nmr_refine.entry_id 1MG8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1MG8 _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1MG8 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR ? refinement ? 1 NMRPipe ? processing ? 2 # _exptl.entry_id 1MG8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1MG8 _struct.title 'NMR structure of ubiquitin-like domain in murine Parkin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MG8 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'parkinson disease, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, APOPTOSIS' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ILE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 25 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 37 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ILE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 25 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 37 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 14 ? GLU A 18 ? GLY A 14 GLU A 18 A 2 ILE A 4 ? ARG A 8 ? ILE A 4 ARG A 8 A 3 ILE A 68 ? ILE A 71 ? ILE A 68 ILE A 71 A 4 VAL A 45 ? PHE A 47 ? VAL A 45 PHE A 47 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 17 ? O VAL A 17 N VAL A 5 ? N VAL A 5 A 2 3 N PHE A 6 ? N PHE A 6 O VAL A 69 ? O VAL A 69 A 3 4 O HIS A 70 ? O HIS A 70 N ILE A 46 ? N ILE A 46 # _database_PDB_matrix.entry_id 1MG8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MG8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ARG 78 78 78 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-08 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2022-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 9 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PHE _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PHE _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.75 _pdbx_validate_rmsd_angle.angle_target_value 120.80 _pdbx_validate_rmsd_angle.angle_deviation -5.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 9 ? ? -68.89 96.64 2 1 ASN A 10 ? ? 61.61 -131.31 3 1 SER A 12 ? ? 77.60 -1.43 4 1 SER A 24 ? ? -60.84 -142.40 5 1 ILE A 25 ? ? -130.17 -31.11 6 1 ALA A 48 ? ? 59.61 7.76 7 1 ASP A 62 ? ? 103.78 30.63 8 1 GLU A 64 ? ? 59.96 152.41 9 1 GLN A 66 ? ? 74.60 106.40 10 1 SER A 67 ? ? -171.81 130.38 11 1 ARG A 74 ? ? -39.57 96.95 12 1 ARG A 77 ? ? -54.12 92.98 13 2 ASN A 10 ? ? 62.12 -90.78 14 2 SER A 11 ? ? -128.35 -71.12 15 2 SER A 24 ? ? -61.24 -142.61 16 2 ASP A 62 ? ? 155.02 36.61 17 2 GLU A 64 ? ? 46.99 -154.34 18 2 GLN A 66 ? ? 74.39 109.35 19 2 SER A 67 ? ? -175.87 129.84 20 2 ARG A 74 ? ? -53.64 108.35 21 2 ARG A 77 ? ? -53.70 92.28 22 3 ASN A 10 ? ? 54.46 162.99 23 3 SER A 11 ? ? 34.89 -109.21 24 3 TYR A 13 ? ? -48.12 153.74 25 3 SER A 24 ? ? 69.31 -142.81 26 3 ILE A 25 ? ? -144.15 -25.50 27 3 ASP A 62 ? ? 109.13 32.77 28 3 GLU A 64 ? ? 51.60 -157.51 29 3 GLN A 66 ? ? 80.23 111.54 30 3 SER A 67 ? ? -173.34 129.72 31 3 ARG A 77 ? ? -55.90 90.79 32 4 ASN A 10 ? ? 61.62 -91.04 33 4 SER A 11 ? ? -165.30 -63.76 34 4 TYR A 13 ? ? -105.30 -160.92 35 4 ILE A 25 ? ? 72.35 -30.57 36 4 ALA A 48 ? ? 55.66 7.74 37 4 ASP A 62 ? ? 103.26 37.45 38 4 LEU A 63 ? ? -66.60 -83.23 39 4 GLU A 64 ? ? 76.45 162.26 40 4 GLN A 66 ? ? 76.00 112.30 41 4 SER A 67 ? ? -163.18 118.58 42 4 ARG A 74 ? ? -48.24 105.02 43 4 ARG A 77 ? ? -56.42 92.33 44 5 ASN A 10 ? ? 68.18 -84.62 45 5 SER A 11 ? ? -177.20 -32.09 46 5 SER A 24 ? ? 65.78 -144.53 47 5 ILE A 25 ? ? -144.94 -28.26 48 5 GLU A 51 ? ? -48.36 88.75 49 5 LEU A 56 ? ? -42.47 162.74 50 5 ASP A 62 ? ? 105.56 36.07 51 5 GLU A 64 ? ? 62.94 144.33 52 5 GLN A 65 ? ? -37.14 135.83 53 5 GLN A 66 ? ? 73.59 105.55 54 5 ARG A 74 ? ? -56.09 109.12 55 5 ARG A 77 ? ? -55.88 92.06 56 6 ASN A 10 ? ? 66.77 -82.91 57 6 SER A 11 ? ? 179.30 -31.54 58 6 SER A 24 ? ? -60.61 -135.98 59 6 ILE A 25 ? ? -135.81 -33.38 60 6 ASP A 62 ? ? 106.56 31.16 61 6 GLU A 64 ? ? 61.96 165.26 62 6 GLN A 66 ? ? 75.27 108.23 63 6 ARG A 77 ? ? -55.94 91.83 64 7 ASN A 10 ? ? 58.27 -92.39 65 7 SER A 11 ? ? -145.95 -83.34 66 7 ILE A 25 ? ? 72.04 -35.07 67 7 GLU A 51 ? ? -48.48 96.88 68 7 PRO A 53 ? ? -72.81 -160.49 69 7 ASP A 62 ? ? 90.49 33.72 70 7 GLU A 64 ? ? 51.86 -154.61 71 7 GLN A 66 ? ? 72.90 106.25 72 7 SER A 67 ? ? -175.41 131.93 73 7 ARG A 77 ? ? -56.47 91.66 74 8 ASN A 10 ? ? -32.86 150.57 75 8 SER A 11 ? ? 79.47 -141.28 76 8 ILE A 25 ? ? 72.16 -32.66 77 8 ALA A 48 ? ? 59.41 9.61 78 8 ASP A 62 ? ? 100.47 34.07 79 8 GLU A 64 ? ? 60.31 151.28 80 8 GLN A 65 ? ? -33.89 127.51 81 8 GLN A 66 ? ? 74.58 110.18 82 8 ARG A 77 ? ? -55.95 92.14 83 9 ASN A 10 ? ? -36.69 147.98 84 9 SER A 11 ? ? 78.08 -145.06 85 9 SER A 24 ? ? -60.01 -131.56 86 9 ILE A 25 ? ? -139.69 -32.87 87 9 ALA A 48 ? ? 59.35 7.33 88 9 ASP A 62 ? ? 105.43 30.88 89 9 GLU A 64 ? ? 56.87 163.59 90 9 GLN A 65 ? ? -37.85 122.84 91 9 GLN A 66 ? ? 73.97 107.89 92 9 ARG A 74 ? ? -37.65 98.01 93 9 ARG A 77 ? ? -54.17 91.67 94 10 ASN A 10 ? ? -39.99 153.46 95 10 SER A 11 ? ? 72.96 -151.06 96 10 SER A 24 ? ? -56.78 -149.02 97 10 PRO A 53 ? ? -77.75 -164.29 98 10 ASP A 62 ? ? 107.12 31.88 99 10 LEU A 63 ? ? -72.90 -77.84 100 10 GLU A 64 ? ? 71.24 159.47 101 10 GLN A 65 ? ? -37.99 122.62 102 10 GLN A 66 ? ? 75.82 108.95 103 10 ARG A 74 ? ? -51.20 107.15 104 10 ARG A 77 ? ? -55.37 92.32 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 8 ? ? 0.311 'SIDE CHAIN' 2 1 ARG A 74 ? ? 0.224 'SIDE CHAIN' 3 1 ARG A 76 ? ? 0.280 'SIDE CHAIN' 4 1 ARG A 77 ? ? 0.265 'SIDE CHAIN' 5 1 ARG A 78 ? ? 0.244 'SIDE CHAIN' 6 2 ARG A 8 ? ? 0.167 'SIDE CHAIN' 7 2 ARG A 35 ? ? 0.301 'SIDE CHAIN' 8 2 ARG A 44 ? ? 0.133 'SIDE CHAIN' 9 2 ARG A 74 ? ? 0.275 'SIDE CHAIN' 10 2 ARG A 76 ? ? 0.138 'SIDE CHAIN' 11 2 ARG A 77 ? ? 0.292 'SIDE CHAIN' 12 2 ARG A 78 ? ? 0.230 'SIDE CHAIN' 13 3 ARG A 8 ? ? 0.295 'SIDE CHAIN' 14 3 ARG A 35 ? ? 0.305 'SIDE CHAIN' 15 3 ARG A 44 ? ? 0.299 'SIDE CHAIN' 16 3 ARG A 74 ? ? 0.163 'SIDE CHAIN' 17 3 ARG A 76 ? ? 0.140 'SIDE CHAIN' 18 3 ARG A 77 ? ? 0.220 'SIDE CHAIN' 19 3 ARG A 78 ? ? 0.310 'SIDE CHAIN' 20 4 ARG A 8 ? ? 0.308 'SIDE CHAIN' 21 4 ARG A 35 ? ? 0.309 'SIDE CHAIN' 22 4 ARG A 44 ? ? 0.318 'SIDE CHAIN' 23 4 ARG A 74 ? ? 0.304 'SIDE CHAIN' 24 4 ARG A 76 ? ? 0.245 'SIDE CHAIN' 25 4 ARG A 77 ? ? 0.318 'SIDE CHAIN' 26 4 ARG A 78 ? ? 0.314 'SIDE CHAIN' 27 5 ARG A 8 ? ? 0.318 'SIDE CHAIN' 28 5 ARG A 35 ? ? 0.168 'SIDE CHAIN' 29 5 ARG A 44 ? ? 0.299 'SIDE CHAIN' 30 5 ARG A 74 ? ? 0.275 'SIDE CHAIN' 31 5 ARG A 76 ? ? 0.301 'SIDE CHAIN' 32 5 ARG A 77 ? ? 0.317 'SIDE CHAIN' 33 5 ARG A 78 ? ? 0.276 'SIDE CHAIN' 34 6 ARG A 8 ? ? 0.281 'SIDE CHAIN' 35 6 ARG A 35 ? ? 0.297 'SIDE CHAIN' 36 6 ARG A 44 ? ? 0.232 'SIDE CHAIN' 37 6 ARG A 74 ? ? 0.310 'SIDE CHAIN' 38 6 ARG A 76 ? ? 0.313 'SIDE CHAIN' 39 6 ARG A 77 ? ? 0.210 'SIDE CHAIN' 40 6 ARG A 78 ? ? 0.287 'SIDE CHAIN' 41 7 ARG A 8 ? ? 0.289 'SIDE CHAIN' 42 7 ARG A 35 ? ? 0.299 'SIDE CHAIN' 43 7 ARG A 44 ? ? 0.310 'SIDE CHAIN' 44 7 ARG A 74 ? ? 0.302 'SIDE CHAIN' 45 7 ARG A 76 ? ? 0.140 'SIDE CHAIN' 46 7 ARG A 77 ? ? 0.317 'SIDE CHAIN' 47 8 ARG A 8 ? ? 0.271 'SIDE CHAIN' 48 8 ARG A 35 ? ? 0.304 'SIDE CHAIN' 49 8 ARG A 44 ? ? 0.228 'SIDE CHAIN' 50 8 ARG A 74 ? ? 0.255 'SIDE CHAIN' 51 8 ARG A 76 ? ? 0.298 'SIDE CHAIN' 52 8 ARG A 77 ? ? 0.261 'SIDE CHAIN' 53 8 ARG A 78 ? ? 0.316 'SIDE CHAIN' 54 9 ARG A 8 ? ? 0.262 'SIDE CHAIN' 55 9 ARG A 35 ? ? 0.278 'SIDE CHAIN' 56 9 ARG A 44 ? ? 0.315 'SIDE CHAIN' 57 9 ARG A 74 ? ? 0.282 'SIDE CHAIN' 58 9 ARG A 76 ? ? 0.308 'SIDE CHAIN' 59 9 ARG A 77 ? ? 0.254 'SIDE CHAIN' 60 9 ARG A 78 ? ? 0.203 'SIDE CHAIN' 61 10 ARG A 8 ? ? 0.292 'SIDE CHAIN' 62 10 ARG A 35 ? ? 0.264 'SIDE CHAIN' 63 10 ARG A 44 ? ? 0.091 'SIDE CHAIN' 64 10 ARG A 74 ? ? 0.084 'SIDE CHAIN' 65 10 ARG A 76 ? ? 0.219 'SIDE CHAIN' 66 10 ARG A 77 ? ? 0.294 'SIDE CHAIN' 67 10 ARG A 78 ? ? 0.202 'SIDE CHAIN' #