HEADER HISTOCOMPATIBILITY ANTIGEN/PEPTIDE 23-AUG-95 1MHC TITLE MODEL OF MHC CLASS I H2-M3 WITH NONAPEPTIDE FROM RAT ND1 REFINED AT TITLE 2 2.3 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN H2-M3; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MAJOR HISTOCOMPATIBILITY COMPLEX; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MHC CLASS I ANTIGEN H2-M3; COMPND 9 CHAIN: B, E; COMPND 10 SYNONYM: MAJOR HISTOCOMPATIBILITY COMPLEX; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NONAPEPTIDE FROM RAT NADH DEHYDROGENASE; COMPND 15 CHAIN: C, F; COMPND 16 SYNONYM: ND1; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-M3 B2M; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_GENE: H2-M3 B2M; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: H2-M3 B2M; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 18 EXPRESSION_SYSTEM_GENE: H2-M3 B2M; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 21 ORGANISM_COMMON: BLACK RAT; SOURCE 22 ORGANISM_TAXID: 10117 KEYWDS HISTOCOMPATIBILITY ANTIGEN/PEPTIDE, HISTOCOMPATIBILITY ANTIGEN- KEYWDS 2 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-R.WANG,K.FISCHER LINDAHL,J.DEISENHOFER REVDAT 6 20-NOV-24 1MHC 1 HETSYN REVDAT 5 29-JUL-20 1MHC 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUL-11 1MHC 1 VERSN REVDAT 3 24-FEB-09 1MHC 1 VERSN REVDAT 2 01-APR-03 1MHC 1 JRNL REVDAT 1 29-JAN-96 1MHC 0 JRNL AUTH C.R.WANG,A.R.CASTANO,P.A.PETERSON,C.SLAUGHTER,K.F.LINDAHL, JRNL AUTH 2 J.DEISENHOFER JRNL TITL NONCLASSICAL BINDING OF FORMYLATED PEPTIDE IN CRYSTAL JRNL TITL 2 STRUCTURE OF THE MHC CLASS IB MOLECULE H2-M3 JRNL REF CELL(CAMBRIDGE,MASS.) V. 82 655 1995 JRNL REFN ISSN 0092-8674 JRNL PMID 7664344 JRNL DOI 10.1016/0092-8674(95)90037-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.-R.WANG,B.E.LOVELAND,K.FISCHER LINDAHL REMARK 1 TITL H-2M3 ENCODES THE MHC CLASS I MOLECULE PRESENTING THE REMARK 1 TITL 2 MATERNALLY TRANSMITTED ANTIGEN OF THE MOUSE REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 66 335 1991 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.0 REMARK 3 NUMBER OF REFLECTIONS : 33706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.880 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX RESIDUES RESIDUES RMSD REMARK 300 M1 D 2 .. D 182 A 2 .. A 182 0.288 REMARK 300 M2 D 183 .. D 275 A 183 .. A 275 0.292 REMARK 300 M3 E 1 .. E 99 B 1 .. B 99 0.312 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -36.40172 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -46.88616 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -52.70407 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 465 HIS D 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 112.19 80.07 REMARK 500 ASP A 29 -124.51 61.11 REMARK 500 SER A 38 95.63 -167.27 REMARK 500 GLU A 41 8.10 88.35 REMARK 500 TRP A 51 -2.75 -53.95 REMARK 500 PRO A 57 -13.37 -44.32 REMARK 500 MET A 107 18.82 57.82 REMARK 500 ASP A 122 153.33 -45.80 REMARK 500 TYR A 123 -56.53 -136.31 REMARK 500 SER A 131 -22.92 -147.92 REMARK 500 ASP A 137 -177.06 -172.52 REMARK 500 LYS A 176 -64.25 -26.71 REMARK 500 GLN A 180 41.44 -101.82 REMARK 500 ALA A 182 96.39 -164.26 REMARK 500 PRO A 210 -179.97 -65.88 REMARK 500 ASP A 220 -86.40 64.26 REMARK 500 GLU A 221 20.46 -147.04 REMARK 500 HIS B 31 132.52 -173.28 REMARK 500 TRP B 60 -5.06 68.34 REMARK 500 ASN C 5 97.51 -65.86 REMARK 500 THR C 8 19.49 51.45 REMARK 500 ASP D 29 -120.17 58.81 REMARK 500 SER D 38 107.70 -166.91 REMARK 500 TRP D 51 -5.63 -56.29 REMARK 500 TYR D 123 -61.88 -125.98 REMARK 500 GLN D 180 43.10 -99.96 REMARK 500 ASP D 220 -116.09 62.69 REMARK 500 GLU D 221 50.58 -117.18 REMARK 500 PRO E 20 157.73 -46.13 REMARK 500 ASN E 21 -178.87 -170.27 REMARK 500 TRP E 60 -1.54 72.75 REMARK 500 THR E 75 -70.38 -92.85 REMARK 500 ASP E 76 137.99 -29.77 REMARK 500 LEU F 7 -52.72 78.28 REMARK 500 THR F 8 -76.07 178.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 209 0.08 SIDE CHAIN REMARK 500 TYR D 7 0.07 SIDE CHAIN REMARK 500 TYR F 2 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MHC A 1 276 UNP Q31093 Q31093_MOUSE 25 298 DBREF 1MHC B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 1MHC C 1 9 UNP P03889 NU1M_RAT 1 9 DBREF 1MHC D 1 276 UNP Q31093 Q31093_MOUSE 25 298 DBREF 1MHC E 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 1MHC F 1 9 UNP P03889 NU1M_RAT 1 9 SEQADV 1MHC A UNP Q31093 GLY 299 DELETION SEQADV 1MHC D UNP Q31093 GLY 299 DELETION SEQRES 1 A 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 A 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 A 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 A 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 A 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 A 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 A 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 A 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 A 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 A 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 A 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 A 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 A 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 A 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 A 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 A 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 A 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 A 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 9 FME TYR PHE ILE ASN ILE LEU THR LEU SEQRES 1 D 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 D 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 D 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 D 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 D 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 D 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 D 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 D 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 D 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 D 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 D 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 D 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 D 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 D 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 D 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 D 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 D 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 D 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 D 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 E 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 E 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 E 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 9 FME TYR PHE ILE ASN ILE LEU THR LEU MODRES 1MHC ASN D 86 ASN GLYCOSYLATION SITE MODRES 1MHC FME C 1 MET N-FORMYLMETHIONINE MODRES 1MHC FME F 1 MET N-FORMYLMETHIONINE HET FME C 1 10 HET FME F 1 10 HET NAG D 500 14 HETNAM FME N-FORMYLMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FME 2(C6 H11 N O3 S) FORMUL 7 NAG C8 H15 N O6 FORMUL 8 HOH *372(H2 O) HELIX 1 1 PRO A 50 MET A 52 5 3 HELIX 2 2 GLU A 58 TYR A 84 1 27 HELIX 3 3 MET A 138 ALA A 150 1 13 HELIX 4 4 THR A 152 GLU A 161 1 10 HELIX 5 5 GLU A 163 ASN A 174 1 12 HELIX 6 6 LYS A 176 LEU A 179 1 4 HELIX 7 7 GLU A 254 ARG A 256 5 3 HELIX 8 8 PRO D 50 LYS D 54 5 5 HELIX 9 9 PRO D 57 TYR D 84 1 28 HELIX 10 10 MET D 138 ALA D 150 1 13 HELIX 11 11 THR D 152 GLU D 161 1 10 HELIX 12 12 GLU D 163 ASN D 174 1 12 HELIX 13 13 LYS D 176 LEU D 179 1 4 HELIX 14 14 GLU D 253 ARG D 256 5 4 SHEET 1 A 8 ILE A 42 PRO A 47 0 SHEET 2 A 8 VAL A 31 ILE A 39 -1 N ILE A 39 O ILE A 42 SHEET 3 A 8 TYR A 22 VAL A 28 -1 N VAL A 28 O VAL A 31 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 A 8 ILE A 94 VAL A 103 -1 N VAL A 103 O HIS A 3 SHEET 6 A 8 LEU A 109 TYR A 118 -1 N ALA A 117 O GLN A 96 SHEET 7 A 8 SER A 121 LEU A 126 -1 N ILE A 124 O ALA A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 N THR A 134 O THR A 125 SHEET 1 B 3 LYS A 186 PRO A 193 0 SHEET 2 B 3 VAL A 199 PHE A 208 -1 N LEU A 206 O LYS A 186 SHEET 3 B 3 PHE A 241 VAL A 249 -1 N VAL A 249 O VAL A 199 SHEET 1 C 3 ILE A 213 LYS A 219 0 SHEET 2 C 3 TYR A 257 HIS A 263 -1 N HIS A 262 O THR A 214 SHEET 3 C 3 LEU A 270 LEU A 272 -1 N LEU A 272 O CYS A 259 SHEET 1 D 3 GLN B 6 SER B 11 0 SHEET 2 D 3 PRO B 20 PHE B 30 -1 N THR B 28 O GLN B 6 SHEET 3 D 3 PHE B 62 THR B 71 -1 N PHE B 70 O ASN B 21 SHEET 1 E 3 ILE B 35 LYS B 41 0 SHEET 2 E 3 TYR B 78 HIS B 84 -1 N LYS B 83 O GLU B 36 SHEET 3 E 3 LYS B 91 TYR B 94 -1 N VAL B 93 O CYS B 80 SHEET 1 F 8 ILE D 42 PRO D 47 0 SHEET 2 F 8 VAL D 31 ILE D 39 -1 N ILE D 39 O ILE D 42 SHEET 3 F 8 TYR D 22 VAL D 28 -1 N VAL D 28 O VAL D 31 SHEET 4 F 8 HIS D 3 VAL D 12 -1 N THR D 10 O ILE D 23 SHEET 5 F 8 ILE D 94 VAL D 103 -1 N VAL D 103 O HIS D 3 SHEET 6 F 8 LEU D 109 TYR D 118 -1 N ALA D 117 O GLN D 96 SHEET 7 F 8 SER D 121 LEU D 126 -1 N ILE D 124 O ALA D 116 SHEET 8 F 8 TRP D 133 ALA D 135 -1 N THR D 134 O THR D 125 SHEET 1 G 3 LYS D 186 PRO D 193 0 SHEET 2 G 3 VAL D 199 LEU D 206 -1 N LEU D 206 O LYS D 186 SHEET 3 G 3 LYS D 243 VAL D 249 -1 N VAL D 249 O VAL D 199 SHEET 1 H 3 THR D 214 LYS D 219 0 SHEET 2 H 3 TYR D 257 HIS D 262 -1 N HIS D 262 O THR D 214 SHEET 3 H 3 LEU D 270 LEU D 272 -1 N LEU D 272 O CYS D 259 SHEET 1 I 3 GLN E 6 SER E 11 0 SHEET 2 I 3 PRO E 20 PHE E 30 -1 N THR E 28 O GLN E 6 SHEET 3 I 3 PHE E 62 THR E 71 -1 N PHE E 70 O ASN E 21 SHEET 1 J 3 ILE E 35 LYS E 41 0 SHEET 2 J 3 TYR E 78 HIS E 84 -1 N LYS E 83 O GLU E 36 SHEET 3 J 3 LYS E 91 TYR E 94 -1 N VAL E 93 O CYS E 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.02 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.01 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 SSBOND 4 CYS D 101 CYS D 164 1555 1555 1.99 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.02 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.02 LINK C FME C 1 N TYR C 2 1555 1555 1.33 LINK ND2 ASN D 86 C1 NAG D 500 1555 1555 1.46 LINK C FME F 1 N TYR F 2 1555 1555 1.34 CISPEP 1 TYR A 209 PRO A 210 0 0.34 CISPEP 2 HIS B 31 PRO B 32 0 0.14 CISPEP 3 TYR D 209 PRO D 210 0 -0.01 CISPEP 4 HIS E 31 PRO E 32 0 0.13 CRYST1 65.250 66.100 55.170 102.71 96.28 110.19 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015326 0.005636 0.003375 0.00000 SCALE2 0.000000 0.016119 0.004634 0.00000 SCALE3 0.000000 0.000000 0.018974 0.00000 MTRIX1 1 0.958500 -0.190600 0.211900 4.91290 1 MTRIX2 1 -0.230200 -0.956100 0.181200 38.81280 1 MTRIX3 1 0.168100 -0.222500 -0.960300 28.69440 1 MTRIX1 2 0.964100 -0.186700 0.188600 4.86950 1 MTRIX2 2 -0.221700 -0.957300 0.185400 38.73280 1 MTRIX3 2 0.145900 -0.220600 -0.964400 28.69280 1 MTRIX1 3 0.964600 -0.199100 0.172900 4.96920 1 MTRIX2 3 -0.231700 -0.953000 0.195300 38.69880 1 MTRIX3 3 0.125900 -0.228400 -0.965400 28.64530 1