HEADER HYDROLASE 23-AUG-02 1MIQ TITLE CRYSTAL STRUCTURE OF PROPLASMEPSIN FROM THE HUMAN MALARIAL PATHOGEN TITLE 2 PLASMODIUM VIVAX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMEPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTIC PROTEINASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE 122-RESIDUE PROSEGMENT HAS BEEN TRUNCATED TO 48 COMPND 7 RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ASPARTIC PROTEINASE ZYMOGEN, DOMAIN OPENING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.K.BERNSTEIN,M.M.CHERNEY,C.A.YOWELL,J.B.DAME,M.N.JAMES REVDAT 7 31-JAN-18 1MIQ 1 REMARK REVDAT 6 24-JAN-18 1MIQ 1 REMARK REVDAT 5 13-JUL-11 1MIQ 1 VERSN REVDAT 4 24-FEB-09 1MIQ 1 VERSN REVDAT 3 19-JUL-05 1MIQ 1 DBREF REVDAT 2 05-APR-05 1MIQ 1 JRNL REVDAT 1 18-SEP-02 1MIQ 0 JRNL AUTH N.K.BERNSTEIN,M.M.CHERNEY,C.A.YOWELL,J.B.DAME,M.N.JAMES JRNL TITL STRUCTURAL INSIGHTS INTO THE ACTIVATION OF P. VIVAX JRNL TITL 2 PLASMEPSIN. JRNL REF J.MOL.BIOL. V. 329 505 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12767832 JRNL DOI 10.1016/S0022-2836(03)00444-3 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56000 REMARK 3 B22 (A**2) : 3.40000 REMARK 3 B33 (A**2) : -3.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.409 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6118 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8294 ; 1.520 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 4.239 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1105 ;16.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4617 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2941 ; 0.261 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 870 ; 0.190 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.237 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.214 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3719 ; 0.687 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6040 ; 1.301 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2399 ; 1.913 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2254 ; 3.099 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 111 REMARK 3 RESIDUE RANGE : A 3 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0272 -1.3788 2.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.4730 T22: 0.3141 REMARK 3 T33: 0.5103 T12: 0.0189 REMARK 3 T13: -0.0097 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 2.7270 L22: 1.3863 REMARK 3 L33: 2.2999 L12: 1.2949 REMARK 3 L13: -0.2806 L23: 0.3638 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0741 S13: -0.1188 REMARK 3 S21: 0.0242 S22: -0.0292 S23: 0.0726 REMARK 3 S31: 0.2927 S32: 0.0378 S33: 0.0592 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8127 -11.5058 10.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.5487 REMARK 3 T33: 0.5405 T12: -0.1852 REMARK 3 T13: 0.1275 T23: 0.1554 REMARK 3 L TENSOR REMARK 3 L11: 27.8889 L22: 53.8866 REMARK 3 L33: 30.6792 L12: 24.0107 REMARK 3 L13: 1.7207 L23: 14.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.2735 S12: 1.3573 S13: 1.5759 REMARK 3 S21: -0.2672 S22: 0.4070 S23: 3.0106 REMARK 3 S31: 1.3144 S32: -2.2137 S33: -0.1335 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4825 -19.5737 26.2917 REMARK 3 T TENSOR REMARK 3 T11: 0.4813 T22: 0.3951 REMARK 3 T33: 0.5117 T12: -0.0134 REMARK 3 T13: 0.0843 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 19.9721 L22: 0.6085 REMARK 3 L33: 4.9631 L12: 2.1066 REMARK 3 L13: -10.3454 L23: -1.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.6149 S12: -0.9214 S13: -1.2965 REMARK 3 S21: 0.0394 S22: -0.0999 S23: -0.3933 REMARK 3 S31: 0.1389 S32: 0.2090 S33: 0.7148 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 197 REMARK 3 RESIDUE RANGE : B 301 B 327 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9841 -13.0661 35.5115 REMARK 3 T TENSOR REMARK 3 T11: 0.5240 T22: 0.4373 REMARK 3 T33: 0.4254 T12: -0.0142 REMARK 3 T13: 0.0048 T23: -0.1427 REMARK 3 L TENSOR REMARK 3 L11: 5.2994 L22: 0.8157 REMARK 3 L33: 3.2022 L12: -1.0581 REMARK 3 L13: -0.5769 L23: 0.7725 REMARK 3 S TENSOR REMARK 3 S11: -0.3633 S12: -0.5960 S13: 0.2305 REMARK 3 S21: 0.0349 S22: 0.2465 S23: -0.1137 REMARK 3 S31: -0.1010 S32: 0.0252 S33: 0.1168 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 198 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2405 -9.7392 37.2493 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.7851 REMARK 3 T33: 0.6116 T12: -0.0293 REMARK 3 T13: -0.1019 T23: -0.3136 REMARK 3 L TENSOR REMARK 3 L11: 6.4446 L22: 3.4515 REMARK 3 L33: 4.9457 L12: -1.1720 REMARK 3 L13: -2.6197 L23: 1.7771 REMARK 3 S TENSOR REMARK 3 S11: -0.3921 S12: -1.5649 S13: 0.9100 REMARK 3 S21: -0.2537 S22: 0.4529 S23: -0.6702 REMARK 3 S31: -0.1539 S32: 1.0494 S33: -0.0608 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.270 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1QS8 AND 1PFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 100 MM TRIS, 200 MM REMARK 280 AMMONIUM ACETATE, 3% T-AMYL ALCOHOL, 15 % GLYCEROL, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 394K, TEMPERATURE REMARK 280 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.70450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.36750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.70450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.36750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 76P REMARK 465 GLU A 77P REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 117P CG SD CE REMARK 470 LYS A 118P CG CD CE NZ REMARK 470 GLN A 119P CB CG CD OE1 NE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 VAL A 280 CG1 CG2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 THR B 76P OG1 CG2 REMARK 470 GLU B 77P CG CD OE1 OE2 REMARK 470 PHE B 112P CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 279 O ASP A 281 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 9 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 303 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 99P -71.28 -49.42 REMARK 500 SER A 114P -44.48 -152.86 REMARK 500 TYR A 116P 92.87 -62.29 REMARK 500 MET A 117P -78.90 -44.48 REMARK 500 LYS A 118P 57.80 -65.52 REMARK 500 GLN A 119P -121.35 -106.29 REMARK 500 ASP A 4 82.17 -156.06 REMARK 500 ASP A 69 -68.85 -127.10 REMARK 500 SER A 135 46.42 -103.26 REMARK 500 PRO A 243 48.71 -81.25 REMARK 500 ASP A 250 52.90 -97.41 REMARK 500 LEU A 278 -35.13 -178.26 REMARK 500 VAL A 280 -13.48 -45.73 REMARK 500 THR A 283 -74.16 -107.47 REMARK 500 ASP A 295 -153.59 -167.77 REMARK 500 HIS B 78P -179.61 -60.89 REMARK 500 LEU B 101P -123.77 -71.94 REMARK 500 LYS B 102P -70.17 18.96 REMARK 500 ASP B 69 -60.10 -130.21 REMARK 500 SER B 132 -165.51 -112.65 REMARK 500 PHE B 201 71.00 -101.46 REMARK 500 LYS B 208 54.17 37.99 REMARK 500 SER B 224 -70.56 -42.71 REMARK 500 ASN B 251 96.70 -57.35 REMARK 500 SER B 261 -132.30 -108.81 REMARK 500 ALA B 262 -70.09 -76.42 REMARK 500 VAL B 280 -49.99 -130.23 REMARK 500 ASP B 281 107.49 -174.22 REMARK 500 ASP B 295 80.55 -158.64 REMARK 500 SER B 296 -44.87 45.85 REMARK 500 ASN B 297 45.75 -142.19 REMARK 500 GLU B 318 54.13 35.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QS8 RELATED DB: PDB REMARK 900 P. VIVAX PLASMEPSIN REMARK 900 RELATED ID: 1PFZ RELATED DB: PDB REMARK 900 P. FALCIPARUM PROPLASMEPSIN II REMARK 900 RELATED ID: 1LS5 RELATED DB: PDB REMARK 900 P. FALCIPARUM PLASMEPSIN IV REMARK 900 RELATED ID: 1SME RELATED DB: PDB REMARK 900 P. FALCIPARUM PLASMEPSIN II DBREF 1MIQ A 76P 327 UNP O60989 O60989_PLAVI 76 450 DBREF 1MIQ B 76P 327 UNP O60989 O60989_PLAVI 76 450 SEQRES 1 A 375 THR GLU HIS LEU THR LEU ALA PHE LYS ILE GLU ARG PRO SEQRES 2 A 375 TYR ASP LYS VAL LEU LYS THR ILE SER LYS LYS ASN LEU SEQRES 3 A 375 LYS ASN TYR ILE LYS GLU THR PHE ASN PHE PHE LYS SER SEQRES 4 A 375 GLY TYR MET LYS GLN ASN TYR LEU GLY SER GLU ASN ASP SEQRES 5 A 375 VAL ILE GLU LEU ASP ASP VAL ALA ASN ILE MET PHE TYR SEQRES 6 A 375 GLY GLU GLY GLU VAL GLY ASP ASN HIS GLN LYS PHE MET SEQRES 7 A 375 LEU ILE PHE ASP THR GLY SER ALA ASN LEU TRP VAL PRO SEQRES 8 A 375 SER LYS LYS CYS ASN SER SER GLY CYS SER ILE LYS ASN SEQRES 9 A 375 LEU TYR ASP SER SER LYS SER LYS SER TYR GLU LYS ASP SEQRES 10 A 375 GLY THR LYS VAL ASP ILE THR TYR GLY SER GLY THR VAL SEQRES 11 A 375 LYS GLY PHE PHE SER LYS ASP LEU VAL THR LEU GLY HIS SEQRES 12 A 375 LEU SER MET PRO TYR LYS PHE ILE GLU VAL THR ASP THR SEQRES 13 A 375 ASP ASP LEU GLU PRO ILE TYR SER SER VAL GLU PHE ASP SEQRES 14 A 375 GLY ILE LEU GLY LEU GLY TRP LYS ASP LEU SER ILE GLY SEQRES 15 A 375 SER ILE ASP PRO ILE VAL VAL GLU LEU LYS ASN GLN ASN SEQRES 16 A 375 LYS ILE ASP ASN ALA LEU PHE THR PHE TYR LEU PRO VAL SEQRES 17 A 375 HIS ASP VAL HIS ALA GLY TYR LEU THR ILE GLY GLY ILE SEQRES 18 A 375 GLU GLU LYS PHE TYR GLU GLY ASN ILE THR TYR GLU LYS SEQRES 19 A 375 LEU ASN HIS ASP LEU TYR TRP GLN ILE ASP LEU ASP VAL SEQRES 20 A 375 HIS PHE GLY LYS GLN THR MET GLU LYS ALA ASN VAL ILE SEQRES 21 A 375 VAL ASP SER GLY THR THR THR ILE THR ALA PRO SER GLU SEQRES 22 A 375 PHE LEU ASN LYS PHE PHE ALA ASN LEU ASN VAL ILE LYS SEQRES 23 A 375 VAL PRO PHE LEU PRO PHE TYR VAL THR THR CYS ASP ASN SEQRES 24 A 375 LYS GLU MET PRO THR LEU GLU PHE LYS SER ALA ASN ASN SEQRES 25 A 375 THR TYR THR LEU GLU PRO GLU TYR TYR MET ASN PRO ILE SEQRES 26 A 375 LEU GLU VAL ASP ASP THR LEU CYS MET ILE THR MET LEU SEQRES 27 A 375 PRO VAL ASP ILE ASP SER ASN THR PHE ILE LEU GLY ASP SEQRES 28 A 375 PRO PHE MET ARG LYS TYR PHE THR VAL PHE ASP TYR ASP SEQRES 29 A 375 LYS GLU SER VAL GLY PHE ALA ILE ALA LYS ASN SEQRES 1 B 375 THR GLU HIS LEU THR LEU ALA PHE LYS ILE GLU ARG PRO SEQRES 2 B 375 TYR ASP LYS VAL LEU LYS THR ILE SER LYS LYS ASN LEU SEQRES 3 B 375 LYS ASN TYR ILE LYS GLU THR PHE ASN PHE PHE LYS SER SEQRES 4 B 375 GLY TYR MET LYS GLN ASN TYR LEU GLY SER GLU ASN ASP SEQRES 5 B 375 VAL ILE GLU LEU ASP ASP VAL ALA ASN ILE MET PHE TYR SEQRES 6 B 375 GLY GLU GLY GLU VAL GLY ASP ASN HIS GLN LYS PHE MET SEQRES 7 B 375 LEU ILE PHE ASP THR GLY SER ALA ASN LEU TRP VAL PRO SEQRES 8 B 375 SER LYS LYS CYS ASN SER SER GLY CYS SER ILE LYS ASN SEQRES 9 B 375 LEU TYR ASP SER SER LYS SER LYS SER TYR GLU LYS ASP SEQRES 10 B 375 GLY THR LYS VAL ASP ILE THR TYR GLY SER GLY THR VAL SEQRES 11 B 375 LYS GLY PHE PHE SER LYS ASP LEU VAL THR LEU GLY HIS SEQRES 12 B 375 LEU SER MET PRO TYR LYS PHE ILE GLU VAL THR ASP THR SEQRES 13 B 375 ASP ASP LEU GLU PRO ILE TYR SER SER VAL GLU PHE ASP SEQRES 14 B 375 GLY ILE LEU GLY LEU GLY TRP LYS ASP LEU SER ILE GLY SEQRES 15 B 375 SER ILE ASP PRO ILE VAL VAL GLU LEU LYS ASN GLN ASN SEQRES 16 B 375 LYS ILE ASP ASN ALA LEU PHE THR PHE TYR LEU PRO VAL SEQRES 17 B 375 HIS ASP VAL HIS ALA GLY TYR LEU THR ILE GLY GLY ILE SEQRES 18 B 375 GLU GLU LYS PHE TYR GLU GLY ASN ILE THR TYR GLU LYS SEQRES 19 B 375 LEU ASN HIS ASP LEU TYR TRP GLN ILE ASP LEU ASP VAL SEQRES 20 B 375 HIS PHE GLY LYS GLN THR MET GLU LYS ALA ASN VAL ILE SEQRES 21 B 375 VAL ASP SER GLY THR THR THR ILE THR ALA PRO SER GLU SEQRES 22 B 375 PHE LEU ASN LYS PHE PHE ALA ASN LEU ASN VAL ILE LYS SEQRES 23 B 375 VAL PRO PHE LEU PRO PHE TYR VAL THR THR CYS ASP ASN SEQRES 24 B 375 LYS GLU MET PRO THR LEU GLU PHE LYS SER ALA ASN ASN SEQRES 25 B 375 THR TYR THR LEU GLU PRO GLU TYR TYR MET ASN PRO ILE SEQRES 26 B 375 LEU GLU VAL ASP ASP THR LEU CYS MET ILE THR MET LEU SEQRES 27 B 375 PRO VAL ASP ILE ASP SER ASN THR PHE ILE LEU GLY ASP SEQRES 28 B 375 PRO PHE MET ARG LYS TYR PHE THR VAL PHE ASP TYR ASP SEQRES 29 B 375 LYS GLU SER VAL GLY PHE ALA ILE ALA LYS ASN FORMUL 3 HOH *63(H2 O) HELIX 1 1 ARG A 87P ILE A 96P 1 10 HELIX 2 2 SER A 97P LYS A 113P 1 17 HELIX 3 3 GLU A 7 VAL A 11 5 5 HELIX 4 4 SER A 50 LYS A 55 5 6 HELIX 5 5 ASP A 59 SER A 63 5 5 HELIX 6 6 THR A 108 GLU A 112 5 5 HELIX 7 7 PRO A 113 VAL A 118 1 6 HELIX 8 8 PRO A 138 GLN A 146 1 9 HELIX 9 9 GLU A 174 LYS A 176 5 3 HELIX 10 10 PRO A 223 ASN A 235 1 13 HELIX 11 11 GLU A 269 TYR A 272 5 4 HELIX 12 12 GLY A 302 LYS A 308 1 7 HELIX 13 13 ARG B 87P ILE B 96P 1 10 HELIX 14 14 LYS B 99P SER B 114P 1 16 HELIX 15 15 GLU B 7 VAL B 11 5 5 HELIX 16 16 SER B 50 LYS B 55 5 6 HELIX 17 17 ASP B 59 SER B 63 5 5 HELIX 18 18 THR B 108 GLU B 112 5 5 HELIX 19 19 PRO B 113 VAL B 118 1 6 HELIX 20 20 PRO B 138 GLN B 146 1 9 HELIX 21 21 GLU B 174 LYS B 176 5 3 HELIX 22 22 PRO B 223 LEU B 234 1 12 HELIX 23 23 GLU B 269 TYR B 273 1 5 HELIX 24 24 GLY B 302 LYS B 308 1 7 SHEET 1 A14 TYR A 178 LYS A 186 0 SHEET 2 A14 SER A 319 ALA A 325 -1 O ILE A 324 N GLU A 179 SHEET 3 A14 TYR A 309 ASP A 314 -1 N PHE A 310 O ALA A 323 SHEET 4 A14 LEU A 153 TYR A 157 -1 N PHE A 154 O PHE A 313 SHEET 5 A14 ALA A 165 ILE A 170 -1 O THR A 169 N THR A 155 SHEET 6 A14 ILE A 14 TYR A 17 -1 SHEET 7 A14 LEU A 31 ASP A 34 -1 O LEU A 31 N TYR A 17 SHEET 8 A14 GLY A 122 GLY A 125 1 O LEU A 124 N ILE A 32 SHEET 9 A14 LEU A 40 PRO A 43 -1 N TRP A 41 O ILE A 123 SHEET 10 A14 LEU A 96 ASP A 107 1 O VAL A 105 N VAL A 42 SHEET 11 A14 GLY A 80 LEU A 93 -1 N PHE A 85 O GLU A 104 SHEET 12 A14 GLU A 21 VAL A 22 -1 N GLU A 21 O THR A 92 SHEET 13 A14 GLN A 27 LYS A 28 -1 O GLN A 27 N VAL A 22 SHEET 1 B13 TYR A 178 LYS A 186 0 SHEET 2 B13 SER A 319 ALA A 325 -1 O ILE A 324 N GLU A 179 SHEET 3 B13 TYR A 309 ASP A 314 -1 N PHE A 310 O ALA A 323 SHEET 4 B13 LEU A 153 TYR A 157 -1 N PHE A 154 O PHE A 313 SHEET 5 B13 ALA A 165 ILE A 170 -1 O THR A 169 N THR A 155 SHEET 6 B13 ILE A 14 TYR A 17 -1 SHEET 7 B13 LEU A 31 ASP A 34 -1 O LEU A 31 N TYR A 17 SHEET 8 B13 GLY A 122 GLY A 125 1 O LEU A 124 N ILE A 32 SHEET 9 B13 LEU A 40 PRO A 43 -1 N TRP A 41 O ILE A 123 SHEET 10 B13 LEU A 96 ASP A 107 1 O VAL A 105 N VAL A 42 SHEET 11 B13 GLY A 80 LEU A 93 -1 N PHE A 85 O GLU A 104 SHEET 12 B13 GLU A 67 TYR A 77 -1 N TYR A 77 O GLY A 80 SHEET 1 C 7 THR A 265 LEU A 268 0 SHEET 2 C 7 LEU A 257 LYS A 260 -1 N LEU A 257 O LEU A 268 SHEET 3 C 7 GLN A 194 PHE A 201 -1 N HIS A 200 O GLU A 258 SHEET 4 C 7 GLN A 204 VAL A 213 -1 O MET A 206 N VAL A 199 SHEET 5 C 7 THR A 298 LEU A 301 1 O LEU A 301 N ILE A 212 SHEET 6 C 7 ILE A 220 ALA A 222 -1 N THR A 221 O ILE A 300 SHEET 7 C 7 MET A 289 PRO A 291 1 O LEU A 290 N ILE A 220 SHEET 1 D 4 ILE A 237 LYS A 238 0 SHEET 2 D 4 TYR A 245 THR A 248 -1 O VAL A 246 N ILE A 237 SHEET 3 D 4 LEU A 284 ILE A 287 -1 O CYS A 285 N THR A 247 SHEET 4 D 4 MET A 274 PRO A 276 -1 N ASN A 275 O MET A 286 SHEET 1 E13 TYR B 178 LYS B 186 0 SHEET 2 E13 SER B 319 ALA B 325 -1 O ILE B 324 N GLU B 179 SHEET 3 E13 TYR B 309 ASP B 314 -1 N PHE B 310 O ALA B 323 SHEET 4 E13 LEU B 153 TYR B 157 -1 N PHE B 154 O PHE B 313 SHEET 5 E13 ALA B 165 ILE B 170 -1 O TYR B 167 N TYR B 157 SHEET 6 E13 ILE B 14 TYR B 17 -1 SHEET 7 E13 LEU B 31 ASP B 34 -1 O LEU B 31 N TYR B 17 SHEET 8 E13 GLY B 122 GLY B 125 1 O LEU B 124 N ILE B 32 SHEET 9 E13 LEU B 40 PRO B 43 -1 N TRP B 41 O ILE B 123 SHEET 10 E13 LEU B 96 ASP B 107 1 O VAL B 105 N VAL B 42 SHEET 11 E13 GLY B 80 LEU B 93 -1 N PHE B 85 O GLU B 104 SHEET 12 E13 GLU B 21 VAL B 22 -1 N GLU B 21 O THR B 92 SHEET 1 F13 TYR B 178 LYS B 186 0 SHEET 2 F13 SER B 319 ALA B 325 -1 O ILE B 324 N GLU B 179 SHEET 3 F13 TYR B 309 ASP B 314 -1 N PHE B 310 O ALA B 323 SHEET 4 F13 LEU B 153 TYR B 157 -1 N PHE B 154 O PHE B 313 SHEET 5 F13 ALA B 165 ILE B 170 -1 O TYR B 167 N TYR B 157 SHEET 6 F13 ILE B 14 TYR B 17 -1 SHEET 7 F13 LEU B 31 ASP B 34 -1 O LEU B 31 N TYR B 17 SHEET 8 F13 GLY B 122 GLY B 125 1 O LEU B 124 N ILE B 32 SHEET 9 F13 LEU B 40 PRO B 43 -1 N TRP B 41 O ILE B 123 SHEET 10 F13 LEU B 96 ASP B 107 1 O VAL B 105 N VAL B 42 SHEET 11 F13 GLY B 80 LEU B 93 -1 N PHE B 85 O GLU B 104 SHEET 12 F13 GLU B 67 TYR B 77 -1 N VAL B 73 O GLY B 84 SHEET 1 G 5 THR B 265 LEU B 268 0 SHEET 2 G 5 LEU B 257 LYS B 260 -1 N LEU B 257 O LEU B 268 SHEET 3 G 5 GLN B 194 PHE B 201 -1 N HIS B 200 O GLU B 258 SHEET 4 G 5 GLN B 204 VAL B 213 -1 O ALA B 209 N LEU B 197 SHEET 5 G 5 THR B 298 LEU B 301 1 O LEU B 301 N ILE B 212 SHEET 1 H 2 ILE B 220 ALA B 222 0 SHEET 2 H 2 MET B 289 PRO B 291 1 O LEU B 290 N ILE B 220 SHEET 1 I 4 ILE B 237 LYS B 238 0 SHEET 2 I 4 TYR B 245 THR B 248 -1 O VAL B 246 N ILE B 237 SHEET 3 I 4 ASP B 281 ILE B 287 -1 O CYS B 285 N THR B 247 SHEET 4 I 4 MET B 274 ILE B 277 -1 N ASN B 275 O MET B 286 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.04 SSBOND 2 CYS A 249 CYS A 285 1555 1555 2.04 SSBOND 3 CYS B 47 CYS B 52 1555 1555 2.07 SSBOND 4 CYS B 249 CYS B 285 1555 1555 2.04 CISPEP 1 GLU A 112 PRO A 113 0 6.33 CISPEP 2 GLU B 112 PRO B 113 0 9.75 CRYST1 149.409 92.735 99.132 90.00 130.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006693 0.000000 0.005637 0.00000 SCALE2 0.000000 0.010783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013189 0.00000